RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 AGMATQ9BSE5 352 aa3.48□□□□□ -1.85
UPF3B-203ENST00000478840 TM6SF2Q9BZW4 377 aa3.48□□□□□ -1.85
UPF3B-203ENST00000478840 KIR3DX1Q9H7L2 352 aa3.48□□□□□ -1.85
UPF3B-203ENST00000478840 ADAM22Q9P0K1 906 aa3.48□□□□□ -1.85
UPF3B-203ENST00000478840 IFNKQ9P0W0 207 aa3.48□□□□□ -1.85
UPF3B-203ENST00000478840 STK38LQ9Y2H1 464 aa3.48□□□□□ -1.85
UPF3B-203ENST00000478840 A0A1B0GUA9 196 aa3.47□□□□□ -1.85
UPF3B-203ENST00000478840 A0A1W2PRF3 423 aa3.47□□□□□ -1.85
UPF3B-203ENST00000478840 A0A1W2PRM7 423 aa3.47□□□□□ -1.85
UPF3B-203ENST00000478840 CENPXA8MT69 81 aa3.47□□□□□ -1.85
UPF3B-203ENST00000478840 H3BN98 237 aa3.47□□□□□ -1.85
UPF3B-203ENST00000478840 PANO1I0J062 215 aa3.47□□□□□ -1.85
UPF3B-203ENST00000478840 M0QX08 132 aa3.47□□□□□ -1.85
UPF3B-203ENST00000478840 RNF113AO15541 343 aaKnown RBP3.47□□□□□ -1.85
UPF3B-203ENST00000478840 SS18L1O75177 396 aaPredicted RBP3.47□□□□□ -1.85
UPF3B-203ENST00000478840 ETHE1O95571 254 aa3.47□□□□□ -1.85
UPF3B-203ENST00000478840 HOXB8P17481 243 aaPredicted RBP3.47□□□□□ -1.85
UPF3B-203ENST00000478840 CXCL5P42830 114 aa3.47□□□□□ -1.85
UPF3B-203ENST00000478840 SERPINB8P50452 374 aa3.47□□□□□ -1.85
UPF3B-203ENST00000478840 KRTAP10-12P60413 245 aa3.47□□□□□ -1.85
UPF3B-203ENST00000478840 YWHAEP62258 255 aaKnown RBP3.47□□□□□ -1.85
UPF3B-203ENST00000478840 XIAPP98170 497 aa3.47□□□□□ -1.85
UPF3B-203ENST00000478840 STK11Q15831 433 aa3.47□□□□□ -1.85
UPF3B-203ENST00000478840 RWDD4Q6NW29 188 aaKnown RBP3.47□□□□□ -1.85
UPF3B-203ENST00000478840 PRMT9Q6P2P2 845 aa3.47□□□□□ -1.85
UPF3B-203ENST00000478840 FBXW12Q6X9E4 464 aa3.47□□□□□ -1.85
UPF3B-203ENST00000478840 KIF2BQ8N4N8 673 aa3.47□□□□□ -1.85
UPF3B-203ENST00000478840 OR10AD1Q8NGE0 317 aa3.47□□□□□ -1.85
UPF3B-203ENST00000478840 IL22RA2Q969J5 263 aa3.47□□□□□ -1.85
UPF3B-203ENST00000478840 ELSPBP1Q96BH3 223 aa3.47□□□□□ -1.85
UPF3B-203ENST00000478840 MSANTD3Q96H12 275 aa3.47□□□□□ -1.85
UPF3B-203ENST00000478840 CDC42EP4Q9H3Q1 356 aaKnown RBP3.47□□□□□ -1.85
UPF3B-203ENST00000478840 ISYNA1Q9NPH2 558 aa3.47□□□□□ -1.85
UPF3B-203ENST00000478840 KPTNQ9Y664 436 aa3.47□□□□□ -1.85
UPF3B-203ENST00000478840 ADAMTS9Q9P2N4 1935 aa3.46□□□□□ -1.85
UPF3B-203ENST00000478840 CIB4A0PJX0 185 aa3.46□□□□□ -1.86
UPF3B-203ENST00000478840 ZNF879B4DU55 563 aa3.46□□□□□ -1.86
UPF3B-203ENST00000478840 GMDSO60547 372 aa3.46□□□□□ -1.86
UPF3B-203ENST00000478840 MPDU1O75352 247 aa3.46□□□□□ -1.86
UPF3B-203ENST00000478840 HOXC4P09017 264 aaPredicted RBP3.46□□□□□ -1.86
UPF3B-203ENST00000478840 PGA5P0DJD9 388 aa3.46□□□□□ -1.86
UPF3B-203ENST00000478840 RAB5AP20339 215 aa3.46□□□□□ -1.86
UPF3B-203ENST00000478840 IVDP26440 423 aa3.46□□□□□ -1.86
UPF3B-203ENST00000478840 CEACAM3P40198 252 aa3.46□□□□□ -1.86
UPF3B-203ENST00000478840 CEACAM6P40199 344 aa3.46□□□□□ -1.86
UPF3B-203ENST00000478840 CYB561P49447 251 aa3.46□□□□□ -1.86
UPF3B-203ENST00000478840 LHX2P50458 406 aa3.46□□□□□ -1.86
UPF3B-203ENST00000478840 VSX2P58304 361 aaPredicted RBP3.46□□□□□ -1.86
UPF3B-203ENST00000478840 PSMC5P62195 406 aa3.46□□□□□ -1.86
UPF3B-203ENST00000478840 SLC39A6Q13433 755 aa3.46□□□□□ -1.86
UPF3B-203ENST00000478840 PIGGQ5H8A4 983 aa3.46□□□□□ -1.86
UPF3B-203ENST00000478840 ABHD12BQ7Z5M8 362 aaPredicted RBP3.46□□□□□ -1.86
UPF3B-203ENST00000478840 ZNF429Q86V71 674 aa3.46□□□□□ -1.86
UPF3B-203ENST00000478840 UNC93AQ86WB7 457 aa3.46□□□□□ -1.86
UPF3B-203ENST00000478840 FAM71AQ8IYT1 594 aa3.46□□□□□ -1.86
UPF3B-203ENST00000478840 CBR4Q8N4T8 237 aa3.46□□□□□ -1.86
UPF3B-203ENST00000478840 C11orf72Q8NBR9 251 aa3.46□□□□□ -1.86
UPF3B-203ENST00000478840 OR10W1Q8NGF6 305 aa3.46□□□□□ -1.86
UPF3B-203ENST00000478840 OR51G1Q8NGK1 321 aa3.46□□□□□ -1.86
UPF3B-203ENST00000478840 OR5AR1Q8NGP9 310 aa3.46□□□□□ -1.86
UPF3B-203ENST00000478840 OR51E1Q8TCB6 317 aa3.46□□□□□ -1.86
UPF3B-203ENST00000478840 TCP10LQ8TDR4 215 aa3.46□□□□□ -1.86
UPF3B-203ENST00000478840 SLC25A2Q9BXI2 301 aa3.46□□□□□ -1.86
UPF3B-203ENST00000478840 NAA50Q9GZZ1 169 aaKnown RBP3.46□□□□□ -1.86
UPF3B-203ENST00000478840 UBE2ZQ9H832 354 aaPredicted RBP3.46□□□□□ -1.86
UPF3B-203ENST00000478840 PDFQ9HBH1 243 aa3.46□□□□□ -1.86
UPF3B-203ENST00000478840 SLC39A1Q9NY26 324 aa3.46□□□□□ -1.86
UPF3B-203ENST00000478840 UVRAGQ9P2Y5 699 aa3.46□□□□□ -1.86
UPF3B-203ENST00000478840 FLVCR2Q9UPI3 526 aa3.46□□□□□ -1.86
UPF3B-203ENST00000478840 TMEM94Q12767 1356 aa3.46□□□□□ -1.86
UPF3B-203ENST00000478840 SCN2AQ99250 2005 aa3.45□□□□□ -1.86
UPF3B-203ENST00000478840 IGLV11-55A0A075B6I3 123 aa3.45□□□□□ -1.86
UPF3B-203ENST00000478840 IGHV3-74A0A0B4J1X5 117 aa3.45□□□□□ -1.86
UPF3B-203ENST00000478840 PSMD11O00231 422 aa3.45□□□□□ -1.86
UPF3B-203ENST00000478840 SLC19A2O60779 497 aa3.45□□□□□ -1.86
UPF3B-203ENST00000478840 FABP3P05413 133 aa3.45□□□□□ -1.86
UPF3B-203ENST00000478840 ERGP11308 486 aa3.45□□□□□ -1.86
UPF3B-203ENST00000478840 PFN2P35080 140 aa3.45□□□□□ -1.86
UPF3B-203ENST00000478840 ZNF136P52737 540 aa3.45□□□□□ -1.86
UPF3B-203ENST00000478840 GTF3C1Q12789 2109 aa3.45□□□□□ -1.86
UPF3B-203ENST00000478840 SLAQ13239 276 aa3.45□□□□□ -1.86
UPF3B-203ENST00000478840 RCAN2Q14206 197 aa3.45□□□□□ -1.86
UPF3B-203ENST00000478840 KIR2DS1Q14954 304 aa3.45□□□□□ -1.86
UPF3B-203ENST00000478840 PON2Q15165 354 aa3.45□□□□□ -1.86
UPF3B-203ENST00000478840 MPPED2Q15777 294 aa3.45□□□□□ -1.86
UPF3B-203ENST00000478840 GCSAMLQ5JQS6 135 aa3.45□□□□□ -1.86
UPF3B-203ENST00000478840 C12orf54Q6X4T0 127 aa3.45□□□□□ -1.86
UPF3B-203ENST00000478840 MRPL55Q7Z7F7 128 aaKnown RBP3.45□□□□□ -1.86
UPF3B-203ENST00000478840 ARHGAP18Q8N392 663 aa3.45□□□□□ -1.86
UPF3B-203ENST00000478840 ARRDC1Q8N5I2 433 aa3.45□□□□□ -1.86
UPF3B-203ENST00000478840 BTN2A3PQ96KV6 586 aa3.45□□□□□ -1.86
UPF3B-203ENST00000478840 RNF145Q96MT1 663 aa3.45□□□□□ -1.86
UPF3B-203ENST00000478840 ZNF317Q96PQ6 595 aaPredicted RBP3.45□□□□□ -1.86
UPF3B-203ENST00000478840 CHAC1Q9BUX1 264 aa3.45□□□□□ -1.86
UPF3B-203ENST00000478840 ZMAT5Q9UDW3 170 aaKnown RBP3.45□□□□□ -1.86
UPF3B-203ENST00000478840 CACNG2Q9Y698 323 aa3.45□□□□□ -1.86
UPF3B-203ENST00000478840 AQRO60306 1485 aaKnown RBP eCLIP3.44□□□□□ -1.861e-6■■■□□ 19.2
UPF3B-203ENST00000478840 IGHV3OR16-9A0A0B4J2B5 98 aa3.44□□□□□ -1.86
UPF3B-203ENST00000478840 IGHV3-66A0A0C4DH42 116 aa3.44□□□□□ -1.86
UPF3B-203ENST00000478840 LOC100506127A0A0U1RQW1 187 aa3.44□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 76.4 ms