RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 TCTEX1D2Q8WW35 142 aa3.37□□□□□ -1.87
HMGB1-204ENST00000399489 C22orf15Q8WYQ4 148 aa3.37□□□□□ -1.87
HMGB1-204ENST00000399489 NDRG1Q92597 394 aaKnown RBP3.37□□□□□ -1.87
HMGB1-204ENST00000399489 DYRK2Q92630 601 aa3.37□□□□□ -1.87
HMGB1-204ENST00000399489 MOCOSQ96EN8 888 aa3.37□□□□□ -1.87
HMGB1-204ENST00000399489 WBP1Q96G27 269 aa3.37□□□□□ -1.87
HMGB1-204ENST00000399489 OLFM3Q96PB7 478 aa3.37□□□□□ -1.87
HMGB1-204ENST00000399489 OR5B12Q96R08 314 aa3.37□□□□□ -1.87
HMGB1-204ENST00000399489 SORT1Q99523 831 aa3.37□□□□□ -1.87
HMGB1-204ENST00000399489 LGMNQ99538 433 aa3.37□□□□□ -1.87
HMGB1-204ENST00000399489 MCHR1Q99705 422 aa3.37□□□□□ -1.87
HMGB1-204ENST00000399489 KLHDC3Q9BQ90 382 aa3.37□□□□□ -1.87
HMGB1-204ENST00000399489 METTL9Q9H1A3 318 aa3.37□□□□□ -1.87
HMGB1-204ENST00000399489 UBE2ZQ9H832 354 aaPredicted RBP3.37□□□□□ -1.87
HMGB1-204ENST00000399489 TMBIM4Q9HC24 238 aa3.37□□□□□ -1.87
HMGB1-204ENST00000399489 HRASLSQ9HDD0 168 aa3.37□□□□□ -1.87
HMGB1-204ENST00000399489 INIPQ9NRY2 104 aa3.37□□□□□ -1.87
HMGB1-204ENST00000399489 OCIAD1Q9NX40 245 aa3.37□□□□□ -1.87
HMGB1-204ENST00000399489 B3GNT2Q9NY97 397 aa3.37□□□□□ -1.87
HMGB1-204ENST00000399489 MMACHCQ9Y4U1 282 aa3.37□□□□□ -1.87
HMGB1-204ENST00000399489 MRPS18BQ9Y676 258 aaKnown RBP3.37□□□□□ -1.87
HMGB1-204ENST00000399489 MYO3AQ8NEV4 1616 aa3.37□□□□□ -1.87
HMGB1-204ENST00000399489 LRRC7Q96NW7 1537 aa3.37□□□□□ -1.87
HMGB1-204ENST00000399489 A2ML1A8K2U0 1454 aa3.37□□□□□ -1.87
HMGB1-204ENST00000399489 MED14O60244 1454 aa3.37□□□□□ -1.87
HMGB1-204ENST00000399489 RAB3GAP2Q9H2M9 1393 aa3.37□□□□□ -1.87
HMGB1-204ENST00000399489 MROH7Q68CQ1 1323 aa3.36□□□□□ -1.87
HMGB1-204ENST00000399489 IGLV3-22A0A075B6J6 115 aa3.36□□□□□ -1.87
HMGB1-204ENST00000399489 TRBV5-4A0A0C4DH59 114 aa3.36□□□□□ -1.87
HMGB1-204ENST00000399489 A0A1B0GU03 582 aa3.36□□□□□ -1.87
HMGB1-204ENST00000399489 A0A1W2PR80 420 aa3.36□□□□□ -1.87
HMGB1-204ENST00000399489 ZNF233A6NK53 670 aa3.36□□□□□ -1.87
HMGB1-204ENST00000399489 ZNF729A6NN14 1252 aaPredicted RBP3.36□□□□□ -1.87
HMGB1-204ENST00000399489 USP27XA6NNY8 438 aa3.36□□□□□ -1.87
HMGB1-204ENST00000399489 RNF212BA8MTL3 300 aa3.36□□□□□ -1.87
HMGB1-204ENST00000399489 ZNF487B1APH4 448 aa3.36□□□□□ -1.87
HMGB1-204ENST00000399489 H7C0C1 242 aa3.36□□□□□ -1.87
HMGB1-204ENST00000399489 K7EMT4 169 aa3.36□□□□□ -1.87
HMGB1-204ENST00000399489 UTS2O95399 124 aa3.36□□□□□ -1.87
HMGB1-204ENST00000399489 PAK4O96013 591 aaPredicted RBP3.36□□□□□ -1.87
HMGB1-204ENST00000399489 ORM1P02763 201 aa3.36□□□□□ -1.87
HMGB1-204ENST00000399489 OR9G9P0C7N8 305 aa3.36□□□□□ -1.87
HMGB1-204ENST00000399489 ZP3P21754 424 aa3.36□□□□□ -1.87
HMGB1-204ENST00000399489 DSCR9P59020 149 aa3.36□□□□□ -1.87
HMGB1-204ENST00000399489 TAS2R60P59551 318 aa3.36□□□□□ -1.87
HMGB1-204ENST00000399489 SP4Q02446 784 aa3.36□□□□□ -1.87
HMGB1-204ENST00000399489 CKAP4Q07065 602 aaKnown RBP3.36□□□□□ -1.87
HMGB1-204ENST00000399489 MTF1Q14872 753 aa3.36□□□□□ -1.87
HMGB1-204ENST00000399489 ABRAXAS2Q15018 415 aa3.36□□□□□ -1.87
HMGB1-204ENST00000399489 SLC9A3R2Q15599 337 aa3.36□□□□□ -1.87
HMGB1-204ENST00000399489 HLFQ16534 295 aa3.36□□□□□ -1.87
HMGB1-204ENST00000399489 IZUMO4Q1ZYL8 232 aa3.36□□□□□ -1.87
HMGB1-204ENST00000399489 BSXQ3C1V8 233 aa3.36□□□□□ -1.87
HMGB1-204ENST00000399489 ACER2Q5QJU3 275 aa3.36□□□□□ -1.87
HMGB1-204ENST00000399489 GFI1BQ5VTD9 330 aa3.36□□□□□ -1.87
HMGB1-204ENST00000399489 DRAM2Q6UX65 266 aa3.36□□□□□ -1.87
HMGB1-204ENST00000399489 GSG1LQ6UXU4 331 aa3.36□□□□□ -1.87
HMGB1-204ENST00000399489 DPPA2Q7Z7J5 298 aa3.36□□□□□ -1.87
HMGB1-204ENST00000399489 CCDC71Q8IV32 467 aaPredicted RBP3.36□□□□□ -1.87
HMGB1-204ENST00000399489 WDR31Q8NA23 367 aa3.36□□□□□ -1.87
HMGB1-204ENST00000399489 SUMF1Q8NBK3 374 aa3.36□□□□□ -1.87
HMGB1-204ENST00000399489 ZNRF1Q8ND25 227 aa3.36□□□□□ -1.87
HMGB1-204ENST00000399489 ZNF740Q8NDX6 193 aa3.36□□□□□ -1.87
HMGB1-204ENST00000399489 DUSP18Q8NEJ0 188 aa3.36□□□□□ -1.87
HMGB1-204ENST00000399489 PRSS33Q8NF86 280 aa3.36□□□□□ -1.87
HMGB1-204ENST00000399489 OR5AK3PQ8NH89 298 aa3.36□□□□□ -1.87
HMGB1-204ENST00000399489 OR2T6Q8NHC8 308 aa3.36□□□□□ -1.87
HMGB1-204ENST00000399489 DYNC2LI1Q8TCX1 351 aa3.36□□□□□ -1.87
HMGB1-204ENST00000399489 FAM222BQ8WU58 562 aa3.36□□□□□ -1.87
HMGB1-204ENST00000399489 PCNPQ8WW12 178 aaKnown RBP3.36□□□□□ -1.87
HMGB1-204ENST00000399489 TRUB1Q8WWH5 349 aaKnown RBP3.36□□□□□ -1.87
HMGB1-204ENST00000399489 TMEM80Q96HE8 168 aa3.36□□□□□ -1.87
HMGB1-204ENST00000399489 IL17FQ96PD4 163 aa3.36□□□□□ -1.87
HMGB1-204ENST00000399489 ALKBH3Q96Q83 286 aaPredicted RBP3.36□□□□□ -1.87
HMGB1-204ENST00000399489 TEAD3Q99594 435 aa3.36□□□□□ -1.87
HMGB1-204ENST00000399489 TRABDQ9H4I3 376 aa3.36□□□□□ -1.87
HMGB1-204ENST00000399489 ASB7Q9H672 318 aa3.36□□□□□ -1.87
HMGB1-204ENST00000399489 ABCB9Q9NP78 766 aa3.36□□□□□ -1.87
HMGB1-204ENST00000399489 BABAM2Q9NXR7 383 aa3.36□□□□□ -1.87
HMGB1-204ENST00000399489 TFR2Q9UP52 801 aa3.36□□□□□ -1.87
HMGB1-204ENST00000399489 MRPS18CQ9Y3D5 142 aaKnown RBP3.36□□□□□ -1.87
HMGB1-204ENST00000399489 CDK13Q14004 1512 aaKnown RBP3.36□□□□□ -1.87
HMGB1-204ENST00000399489 MROH2AA6NES4 1674 aa3.36□□□□□ -1.87
HMGB1-204ENST00000399489 ANKRD30BQ9BXX2 1392 aa3.36□□□□□ -1.87
HMGB1-204ENST00000399489 SMIM28A0A1B0GU29 152 aa3.36□□□□□ -1.87
HMGB1-204ENST00000399489 ANKRD20A5PA0PJZ0 165 aa3.36□□□□□ -1.87
HMGB1-204ENST00000399489 IFITM10A6NMD0 228 aa3.36□□□□□ -1.87
HMGB1-204ENST00000399489 HIDE1A8MVS5 230 aa3.36□□□□□ -1.87
HMGB1-204ENST00000399489 HACD1B0YJ81 288 aa3.36□□□□□ -1.87
HMGB1-204ENST00000399489 LOC110117498-PIK3R3F6TDL0 507 aa3.36□□□□□ -1.87
HMGB1-204ENST00000399489 SLC16A4O15374 487 aa3.36□□□□□ -1.87
HMGB1-204ENST00000399489 ERI3O43414 337 aaKnown RBP3.36□□□□□ -1.87
HMGB1-204ENST00000399489 BUB3O43684 328 aa3.36□□□□□ -1.87
HMGB1-204ENST00000399489 PRKNO60260 465 aaPredicted RBP3.36□□□□□ -1.87
HMGB1-204ENST00000399489 SRP72O76094 671 aaKnown RBP3.36□□□□□ -1.87
HMGB1-204ENST00000399489 PRSS2P07478 247 aa3.36□□□□□ -1.87
HMGB1-204ENST00000399489 TFPTP0C1Z6 253 aa3.36□□□□□ -1.87
HMGB1-204ENST00000399489 CD36P16671 472 aa3.36□□□□□ -1.87
HMGB1-204ENST00000399489 CSNK2A2P19784 350 aaPredicted RBP3.36□□□□□ -1.87
HMGB1-204ENST00000399489 RPL31P62899 125 aaKnown RBP3.36□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms