RNA–Protein interactions for RNA: ENST00000354497.4

RTN3-204, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 1,407 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-204ENST00000354497 ABCE1P61221 599 aaKnown RBP9.59□□□□□ -0.87
RTN3-204ENST00000354497 ARF1P84077 181 aaKnown RBP9.59□□□□□ -0.87
RTN3-204ENST00000354497 ALKBH6Q3KRA9 238 aa9.59□□□□□ -0.87
RTN3-204ENST00000354497 LBHQ53QV2 105 aaPredicted RBP9.59□□□□□ -0.87
RTN3-204ENST00000354497 PABPC1L2AQ5JQF8 200 aa9.59□□□□□ -0.87
RTN3-204ENST00000354497 C6orf141Q5SZD1 244 aa9.59□□□□□ -0.87
RTN3-204ENST00000354497 TMEM225Q6GV28 225 aa9.59□□□□□ -0.87
RTN3-204ENST00000354497 LAMTOR1Q6IAA8 161 aa9.59□□□□□ -0.87
RTN3-204ENST00000354497 LINGO2Q7L985 606 aa9.59□□□□□ -0.87
RTN3-204ENST00000354497 KRT74Q7RTS7 529 aa9.59□□□□□ -0.87
RTN3-204ENST00000354497 MDP1Q86V88 176 aa9.59□□□□□ -0.87
RTN3-204ENST00000354497 DDIASQ8IXT1 998 aa9.59□□□□□ -0.87
RTN3-204ENST00000354497 STX19Q8N4C7 294 aa9.59□□□□□ -0.87
RTN3-204ENST00000354497 PARP16Q8N5Y8 322 aa9.59□□□□□ -0.87
RTN3-204ENST00000354497 FCGR1BQ92637 280 aa9.59□□□□□ -0.87
RTN3-204ENST00000354497 MOAP1Q96BY2 351 aa9.59□□□□□ -0.87
RTN3-204ENST00000354497 BOD1Q96IK1 185 aa9.59□□□□□ -0.87
RTN3-204ENST00000354497 SLC35G5Q96KT7 338 aa9.59□□□□□ -0.87
RTN3-204ENST00000354497 FCRL1Q96LA6 429 aa9.59□□□□□ -0.87
RTN3-204ENST00000354497 TCEAL7Q9BRU2 100 aa9.59□□□□□ -0.87
RTN3-204ENST00000354497 SF3B5Q9BWJ5 86 aaKnown RBP9.59□□□□□ -0.87
RTN3-204ENST00000354497 BCL2L14Q9BZR8 327 aa9.59□□□□□ -0.87
RTN3-204ENST00000354497 C20orf27Q9GZN8 174 aa9.59□□□□□ -0.87
RTN3-204ENST00000354497 C7orf69Q9H7B7 122 aa9.59□□□□□ -0.87
RTN3-204ENST00000354497 KAT8Q9H7Z6 458 aaKnown RBP9.59□□□□□ -0.87
RTN3-204ENST00000354497 CCNB1IP1Q9NPC3 277 aa9.59□□□□□ -0.87
RTN3-204ENST00000354497 DCDC2Q9UHG0 476 aa9.59□□□□□ -0.87
RTN3-204ENST00000354497 FZR1Q9UM11 496 aa9.59□□□□□ -0.87
RTN3-204ENST00000354497 ZNF281Q9Y2X9 895 aa9.59□□□□□ -0.87
RTN3-204ENST00000354497 DMRT1Q9Y5R6 373 aa9.59□□□□□ -0.87
RTN3-204ENST00000354497 LYVE1Q9Y5Y7 322 aa9.59□□□□□ -0.87
RTN3-204ENST00000354497 SESN1Q9Y6P5 492 aa9.59□□□□□ -0.87
RTN3-204ENST00000354497 DNAJC9-AS1A6NH13 148 aa9.58□□□□□ -0.88
RTN3-204ENST00000354497 CCDC154A6NI56 674 aa9.58□□□□□ -0.88
RTN3-204ENST00000354497 J3QLI3 93 aa9.58□□□□□ -0.88
RTN3-204ENST00000354497 AIM2O14862 343 aa9.58□□□□□ -0.88
RTN3-204ENST00000354497 CDC14BO60729 498 aa9.58□□□□□ -0.88
RTN3-204ENST00000354497 SCO1O75880 301 aa9.58□□□□□ -0.88
RTN3-204ENST00000354497 DHFRP00374 187 aa9.58□□□□□ -0.88
RTN3-204ENST00000354497 AK1P00568 194 aa9.58□□□□□ -0.88
RTN3-204ENST00000354497 HSMCR30P0CW71 290 aa9.58□□□□□ -0.88
RTN3-204ENST00000354497 HSD17B1P14061 328 aa9.58□□□□□ -0.88
RTN3-204ENST00000354497 TACR3P29371 465 aa9.58□□□□□ -0.88
RTN3-204ENST00000354497 ARR3P36575 388 aa9.58□□□□□ -0.88
RTN3-204ENST00000354497 RPL3P39023 403 aaKnown RBP9.58□□□□□ -0.88
RTN3-204ENST00000354497 ARHGAP11BQ3KRB8 267 aa9.58□□□□□ -0.88
RTN3-204ENST00000354497 COMMD7Q86VX2 200 aa9.58□□□□□ -0.88
RTN3-204ENST00000354497 KLHL36Q8N4N3 616 aa9.58□□□□□ -0.88
RTN3-204ENST00000354497 TAF15Q92804 592 aaKnown RBP eCLIP9.58□□□□□ -0.88
RTN3-204ENST00000354497 RAB39BQ96DA2 213 aa9.58□□□□□ -0.88
RTN3-204ENST00000354497 LGALS12Q96DT0 336 aa9.58□□□□□ -0.88
RTN3-204ENST00000354497 CCDC126Q96EE4 140 aa9.58□□□□□ -0.88
RTN3-204ENST00000354497 TAPBPLQ9BX59 468 aa9.58□□□□□ -0.88
RTN3-204ENST00000354497 ZNF350Q9GZX5 532 aa9.58□□□□□ -0.88
RTN3-204ENST00000354497 NELFAQ9H3P2 528 aa9.58□□□□□ -0.88
RTN3-204ENST00000354497 UFSP2Q9NUQ7 469 aa9.58□□□□□ -0.88
RTN3-204ENST00000354497 EXD2Q9NVH0 621 aa9.58□□□□□ -0.88
RTN3-204ENST00000354497 GIMAP2Q9UG22 337 aa9.58□□□□□ -0.88
RTN3-204ENST00000354497 MID2Q9UJV3 735 aa9.58□□□□□ -0.88
RTN3-204ENST00000354497 WDR45Q9Y484 360 aa9.58□□□□□ -0.88
RTN3-204ENST00000354497 RNF103-CHMP3A0A140T963 221 aa9.57□□□□□ -0.88
RTN3-204ENST00000354497 LOC100653049A0A140TA62 436 aa9.57□□□□□ -0.88
RTN3-204ENST00000354497 AQP7P3A6NL99 342 aa9.57□□□□□ -0.88
RTN3-204ENST00000354497 DUXAA6NLW8 204 aa9.57□□□□□ -0.88
RTN3-204ENST00000354497 ZNF729A6NN14 1252 aaPredicted RBP9.57□□□□□ -0.88
RTN3-204ENST00000354497 AZIN1O14977 448 aa9.57□□□□□ -0.88
RTN3-204ENST00000354497 ZNF208O43345 1280 aa9.57□□□□□ -0.88
RTN3-204ENST00000354497 AKAP8O43823 692 aaKnown RBP9.57□□□□□ -0.88
RTN3-204ENST00000354497 KRT34O76011 436 aa9.57□□□□□ -0.88
RTN3-204ENST00000354497 NCR1O76036 304 aa9.57□□□□□ -0.88
RTN3-204ENST00000354497 CCNB2O95067 398 aa9.57□□□□□ -0.88
RTN3-204ENST00000354497 PRTN3P24158 256 aa9.57□□□□□ -0.88
RTN3-204ENST00000354497 PTBP1P26599 531 aaKnown RBP eCLIP9.57□□□□□ -0.885e-7■■■■□ 22.4
RTN3-204ENST00000354497 SPCS3P61009 180 aa9.57□□□□□ -0.88
RTN3-204ENST00000354497 IL13RA1P78552 427 aa9.57□□□□□ -0.88
RTN3-204ENST00000354497 MAB21L1Q13394 359 aa9.57□□□□□ -0.88
RTN3-204ENST00000354497 MSMPQ1L6U9 139 aa9.57□□□□□ -0.88
RTN3-204ENST00000354497 AADACL4Q5VUY2 407 aa9.57□□□□□ -0.88
RTN3-204ENST00000354497 SLC27A4Q6P1M0 643 aa9.57□□□□□ -0.88
RTN3-204ENST00000354497 CFAP77Q6ZQR2 320 aa9.57□□□□□ -0.88
RTN3-204ENST00000354497 C6orf120Q7Z4R8 191 aa9.57□□□□□ -0.88
RTN3-204ENST00000354497 LRP11Q86VZ4 500 aa9.57□□□□□ -0.88
RTN3-204ENST00000354497 DHFR2Q86XF0 187 aa9.57□□□□□ -0.88
RTN3-204ENST00000354497 C8orf59Q8N0T1 100 aaPredicted RBP9.57□□□□□ -0.88
RTN3-204ENST00000354497 FAM169BQ8N8A8 192 aa9.57□□□□□ -0.88
RTN3-204ENST00000354497 FAM71CQ8NEG0 241 aa9.57□□□□□ -0.88
RTN3-204ENST00000354497 CNOT9Q92600 299 aaKnown RBP9.57□□□□□ -0.88
RTN3-204ENST00000354497 RORBQ92753 470 aa9.57□□□□□ -0.88
RTN3-204ENST00000354497 RAB8BQ92930 207 aa9.57□□□□□ -0.88
RTN3-204ENST00000354497 POP5Q969H6 163 aaKnown RBP9.57□□□□□ -0.88
RTN3-204ENST00000354497 ROPN1LQ96C74 230 aa9.57□□□□□ -0.88
RTN3-204ENST00000354497 OR52B2Q96RD2 323 aa9.57□□□□□ -0.88
RTN3-204ENST00000354497 SLC22A4Q9H015 551 aa9.57□□□□□ -0.88
RTN3-204ENST00000354497 SEMA6AQ9H2E6 1030 aa9.57□□□□□ -0.88
RTN3-204ENST00000354497 OR51I1Q9H343 314 aa9.57□□□□□ -0.88
RTN3-204ENST00000354497 RANGRFQ9HD47 186 aaPredicted RBP9.57□□□□□ -0.88
RTN3-204ENST00000354497 SPAG4Q9NPE6 437 aa9.57□□□□□ -0.88
RTN3-204ENST00000354497 ST6GALNAC1Q9NSC7 600 aaPredicted RBP9.57□□□□□ -0.88
RTN3-204ENST00000354497 MCUBQ9NWR8 336 aa9.57□□□□□ -0.88
RTN3-204ENST00000354497 PGPEP1Q9NXJ5 209 aa9.57□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 66.9 ms