RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 STARD4Q96DR4 205 aa7.49□□□□□ -1.21
HMGB1-203ENST00000341423 PDLIM5Q96HC4 596 aaKnown RBP7.49□□□□□ -1.21
HMGB1-203ENST00000341423 SLC35E1Q96K37 410 aa7.49□□□□□ -1.21
HMGB1-203ENST00000341423 PBOV1Q9GZY1 135 aa7.49□□□□□ -1.21
HMGB1-203ENST00000341423 ZNF286AQ9HBT8 521 aa7.49□□□□□ -1.21
HMGB1-203ENST00000341423 SIX2Q9NPC8 291 aa7.49□□□□□ -1.21
HMGB1-203ENST00000341423 TUBG2Q9NRH3 451 aa7.49□□□□□ -1.21
HMGB1-203ENST00000341423 MKS1Q9NXB0 559 aa7.49□□□□□ -1.21
HMGB1-203ENST00000341423 PYCARDQ9ULZ3 195 aa7.49□□□□□ -1.21
HMGB1-203ENST00000341423 MYH14Q7Z406 1995 aaKnown RBP7.49□□□□□ -1.21
HMGB1-203ENST00000341423 A0A087WV62 115 aa7.49□□□□□ -1.21
HMGB1-203ENST00000341423 DISC1C4P0D8 188 aa7.49□□□□□ -1.21
HMGB1-203ENST00000341423 PSCAO43653 123 aa7.49□□□□□ -1.21
HMGB1-203ENST00000341423 GATA4P43694 442 aa7.49□□□□□ -1.21
HMGB1-203ENST00000341423 FAM74A1Q5RGS3 127 aa7.49□□□□□ -1.21
HMGB1-203ENST00000341423 AADACL3Q5VUY0 350 aa7.49□□□□□ -1.21
HMGB1-203ENST00000341423 PLD6Q8N2A8 252 aaKnown RBP7.49□□□□□ -1.21
HMGB1-203ENST00000341423 CMTM2Q8TAZ6 248 aa7.49□□□□□ -1.21
HMGB1-203ENST00000341423 ZIM3Q96PE6 472 aa7.49□□□□□ -1.21
HMGB1-203ENST00000341423 PRR14Q9BWN1 585 aa7.49□□□□□ -1.21
HMGB1-203ENST00000341423 NPAP1Q9NZP6 1156 aa7.49□□□□□ -1.21
HMGB1-203ENST00000341423 RHCGQ9UBD6 479 aa7.49□□□□□ -1.21
HMGB1-203ENST00000341423 DOCK1Q14185 1865 aa7.49□□□□□ -1.21
HMGB1-203ENST00000341423 H7C417 338 aa7.49□□□□□ -1.21
HMGB1-203ENST00000341423 HNRNPH3P31942 346 aaKnown RBP7.49□□□□□ -1.21
HMGB1-203ENST00000341423 AQP2P41181 271 aa7.49□□□□□ -1.21
HMGB1-203ENST00000341423 CDKN2DP55273 166 aa7.49□□□□□ -1.21
HMGB1-203ENST00000341423 RAB11AP62491 216 aa7.49□□□□□ -1.21
HMGB1-203ENST00000341423 SORDQ00796 357 aa7.49□□□□□ -1.21
HMGB1-203ENST00000341423 AKR7LQ8NHP1 331 aa7.49□□□□□ -1.21
HMGB1-203ENST00000341423 DDB2Q92466 427 aa7.49□□□□□ -1.21
HMGB1-203ENST00000341423 IL4I1Q96RQ9 567 aa7.49□□□□□ -1.21
HMGB1-203ENST00000341423 SSBP3Q9BWW4 388 aaPredicted RBP7.49□□□□□ -1.21
HMGB1-203ENST00000341423 MEPEQ9NQ76 525 aaPredicted RBP7.49□□□□□ -1.21
HMGB1-203ENST00000341423 GLTPQ9NZD2 209 aa7.49□□□□□ -1.21
HMGB1-203ENST00000341423 PKD1L3Q7Z443 1732 aa7.49□□□□□ -1.21
HMGB1-203ENST00000341423 ARFGEF2Q9Y6D5 1785 aa7.49□□□□□ -1.21
HMGB1-203ENST00000341423 ITGB4P16144 1822 aa7.49□□□□□ -1.21
HMGB1-203ENST00000341423 RPS10-NUDT3A0A1W2PQS6 291 aa7.49□□□□□ -1.21
HMGB1-203ENST00000341423 H3BNX3 289 aa7.49□□□□□ -1.21
HMGB1-203ENST00000341423 NRASP01111 189 aa7.49□□□□□ -1.21
HMGB1-203ENST00000341423 IFNA5P01569 189 aa7.49□□□□□ -1.21
HMGB1-203ENST00000341423 ZNF17P17021 662 aa7.49□□□□□ -1.21
HMGB1-203ENST00000341423 KITLGP21583 273 aa7.49□□□□□ -1.21
HMGB1-203ENST00000341423 CDKN2CP42773 168 aa7.49□□□□□ -1.21
HMGB1-203ENST00000341423 ZFP36L1Q07352 338 aaKnown RBP7.49□□□□□ -1.21
HMGB1-203ENST00000341423 HACD4Q5VWC8 232 aa7.49□□□□□ -1.21
HMGB1-203ENST00000341423 MZT2BQ6NZ67 158 aa7.49□□□□□ -1.21
HMGB1-203ENST00000341423 KBTBD8Q8NFY9 601 aa7.49□□□□□ -1.21
HMGB1-203ENST00000341423 LHX4Q969G2 390 aa7.49□□□□□ -1.21
HMGB1-203ENST00000341423 RGCCQ9H4X1 137 aa7.49□□□□□ -1.21
HMGB1-203ENST00000341423 PLAC1Q9HBJ0 212 aa7.49□□□□□ -1.21
HMGB1-203ENST00000341423 ASH2LQ9UBL3 628 aa7.49□□□□□ -1.21
HMGB1-203ENST00000341423 SPTBP11277 2137 aa7.49□□□□□ -1.21
HMGB1-203ENST00000341423 TRPM6Q9BX84 2022 aa7.49□□□□□ -1.21
HMGB1-203ENST00000341423 PPIAL4CA0A0B4J2A2 164 aa7.48□□□□□ -1.21
HMGB1-203ENST00000341423 NOS1APO75052 506 aaPredicted RBP7.48□□□□□ -1.21
HMGB1-203ENST00000341423 ALX3O95076 343 aa7.48□□□□□ -1.21
HMGB1-203ENST00000341423 C1QAP02745 245 aa7.48□□□□□ -1.21
HMGB1-203ENST00000341423 PPIAL4GP0DN37 164 aa7.48□□□□□ -1.21
HMGB1-203ENST00000341423 F8A1P23610 371 aa7.48□□□□□ -1.21
HMGB1-203ENST00000341423 ALDH3B1P43353 468 aa7.48□□□□□ -1.21
HMGB1-203ENST00000341423 SELENOPP49908 381 aa7.48□□□□□ -1.21
HMGB1-203ENST00000341423 NSUN5P2Q63ZY6 315 aa7.48□□□□□ -1.21
HMGB1-203ENST00000341423 GTPBP8Q8N3Z3 284 aaPredicted RBP7.48□□□□□ -1.21
HMGB1-203ENST00000341423 FOXN4Q96NZ1 517 aa7.48□□□□□ -1.21
HMGB1-203ENST00000341423 ZNF69Q9UC07 566 aa7.48□□□□□ -1.21
HMGB1-203ENST00000341423 MYH10P35580 1976 aa7.48□□□□□ -1.21
HMGB1-203ENST00000341423 PRH1P02810 166 aa7.48□□□□□ -1.21
HMGB1-203ENST00000341423 ACHEP22303 614 aa7.48□□□□□ -1.21
HMGB1-203ENST00000341423 KDELR2P33947 212 aa7.48□□□□□ -1.21
HMGB1-203ENST00000341423 BSPH1Q075Z2 132 aa7.48□□□□□ -1.21
HMGB1-203ENST00000341423 FAM209BQ5JX69 171 aa7.48□□□□□ -1.21
HMGB1-203ENST00000341423 GRPEL2Q8TAA5 225 aa7.48□□□□□ -1.21
HMGB1-203ENST00000341423 STOML3Q8TAV4 291 aa7.48□□□□□ -1.21
HMGB1-203ENST00000341423 CIDECQ96AQ7 238 aaPredicted RBP7.48□□□□□ -1.21
HMGB1-203ENST00000341423 HSH2DQ96JZ2 352 aa7.48□□□□□ -1.21
HMGB1-203ENST00000341423 LURAP1Q96LR2 239 aa7.48□□□□□ -1.21
HMGB1-203ENST00000341423 OR52B2Q96RD2 323 aa7.48□□□□□ -1.21
HMGB1-203ENST00000341423 SPIN2AQ99865 258 aa7.48□□□□□ -1.21
HMGB1-203ENST00000341423 SPIN2BQ9BPZ2 258 aa7.48□□□□□ -1.21
HMGB1-203ENST00000341423 DGCR6LQ9BY27 220 aa7.48□□□□□ -1.21
HMGB1-203ENST00000341423 KLHL31Q9H511 634 aa7.48□□□□□ -1.21
HMGB1-203ENST00000341423 NPTNQ9Y639 398 aa7.48□□□□□ -1.21
HMGB1-203ENST00000341423 MDFIC2A0A1B0GVS7 189 aa7.48□□□□□ -1.21
HMGB1-203ENST00000341423 RBP2P50120 134 aa7.48□□□□□ -1.21
HMGB1-203ENST00000341423 RPL27P61353 136 aaKnown RBP7.48□□□□□ -1.21
HMGB1-203ENST00000341423 SSX2Q16385 188 aa7.48□□□□□ -1.21
HMGB1-203ENST00000341423 HYAL4Q2M3T9 481 aa7.48□□□□□ -1.21
HMGB1-203ENST00000341423 ZNF343Q6P1L6 599 aa7.48□□□□□ -1.21
HMGB1-203ENST00000341423 LRRC56Q8IYG6 542 aaPredicted RBP7.48□□□□□ -1.21
HMGB1-203ENST00000341423 EIF1ADQ8N9N8 165 aaKnown RBP7.48□□□□□ -1.21
HMGB1-203ENST00000341423 C10orf90Q96M02 699 aa7.48□□□□□ -1.21
HMGB1-203ENST00000341423 PAIP1Q9H074 479 aaKnown RBP7.48□□□□□ -1.21
HMGB1-203ENST00000341423 SPNS1Q9H2V7 528 aa7.48□□□□□ -1.21
HMGB1-203ENST00000341423 ZMAT3Q9HA38 289 aaKnown RBP7.48□□□□□ -1.21
HMGB1-203ENST00000341423 PARP11Q9NR21 331 aa7.48□□□□□ -1.21
HMGB1-203ENST00000341423 LRP5LA4QPB2 252 aa7.48□□□□□ -1.21
HMGB1-203ENST00000341423 EEDO75530 441 aaKnown RBP7.48□□□□□ -1.21
HMGB1-203ENST00000341423 FXYD4P59646 89 aa7.48□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms