RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 METTL15P1P0C7V9 234 aa10.49□□□□□ -0.73
VPS39-201ENST00000318006 AKR1C3P42330 323 aa10.49□□□□□ -0.73
VPS39-201ENST00000318006 DIO1P49895 249 aa10.49□□□□□ -0.73
VPS39-201ENST00000318006 LIM2P55344 173 aa10.49□□□□□ -0.73
VPS39-201ENST00000318006 UBE2NP61088 152 aaKnown RBP10.49□□□□□ -0.73
VPS39-201ENST00000318006 PTCRAQ6ISU1 281 aaPredicted RBP10.49□□□□□ -0.73
VPS39-201ENST00000318006 CALHM3Q86XJ0 350 aa10.49□□□□□ -0.73
VPS39-201ENST00000318006 DUSP18Q8NEJ0 188 aa10.49□□□□□ -0.73
VPS39-201ENST00000318006 ZFPM2Q8WW38 1151 aa10.49□□□□□ -0.73
VPS39-201ENST00000318006 CDH20Q9HBT6 801 aa10.49□□□□□ -0.73
VPS39-201ENST00000318006 LYRM4Q9HD34 91 aa10.49□□□□□ -0.73
VPS39-201ENST00000318006 MMP26Q9NRE1 261 aa10.49□□□□□ -0.73
VPS39-201ENST00000318006 DHCR7Q9UBM7 475 aaKnown RBP10.49□□□□□ -0.73
VPS39-201ENST00000318006 SLC23A2Q9UGH3 650 aa10.49□□□□□ -0.73
VPS39-201ENST00000318006 A0A1B0GTL3 188 aa10.49□□□□□ -0.73
VPS39-201ENST00000318006 H0Y8X5 98 aa10.49□□□□□ -0.73
VPS39-201ENST00000318006 PYCARD-AS1I3L0S3 204 aa10.49□□□□□ -0.73
VPS39-201ENST00000318006 HRO43593 1189 aa10.49□□□□□ -0.73
VPS39-201ENST00000318006 SUSD5O60279 629 aa10.49□□□□□ -0.73
VPS39-201ENST00000318006 CBX7O95931 251 aa10.49□□□□□ -0.73
VPS39-201ENST00000318006 ITGB8P26012 769 aa10.49□□□□□ -0.73
VPS39-201ENST00000318006 CD27P26842 260 aa10.49□□□□□ -0.73
VPS39-201ENST00000318006 CRYBB2P43320 205 aa10.49□□□□□ -0.73
VPS39-201ENST00000318006 PJVKQ0ZLH3 352 aa10.49□□□□□ -0.73
VPS39-201ENST00000318006 SLC25A35Q3KQZ1 300 aa10.49□□□□□ -0.73
VPS39-201ENST00000318006 MOGAT2Q3SYC2 334 aa10.49□□□□□ -0.73
VPS39-201ENST00000318006 SLC16A13Q7RTY0 426 aa10.49□□□□□ -0.73
VPS39-201ENST00000318006 OR2W3Q7Z3T1 314 aa10.49□□□□□ -0.73
VPS39-201ENST00000318006 TSLPQ969D9 159 aa10.49□□□□□ -0.73
VPS39-201ENST00000318006 TVP23CQ96ET8 276 aa10.49□□□□□ -0.73
VPS39-201ENST00000318006 LCORQ96JN0 433 aaPredicted RBP10.49□□□□□ -0.73
VPS39-201ENST00000318006 LINC00052Q96N35 136 aa10.49□□□□□ -0.73
VPS39-201ENST00000318006 SLC46A1Q96NT5 459 aa10.49□□□□□ -0.73
VPS39-201ENST00000318006 PBX4Q9BYU1 374 aa10.49□□□□□ -0.73
VPS39-201ENST00000318006 KCNIP2Q9NS61 270 aa10.49□□□□□ -0.73
VPS39-201ENST00000318006 MRPL22Q9NWU5 206 aaKnown RBP10.49□□□□□ -0.73
VPS39-201ENST00000318006 MMP17Q9ULZ9 603 aa10.49□□□□□ -0.73
VPS39-201ENST00000318006 OR5K3A6NET4 321 aa10.49□□□□□ -0.73
VPS39-201ENST00000318006 HCRTR1O43613 425 aa10.49□□□□□ -0.73
VPS39-201ENST00000318006 AGBL5Q8NDL9 886 aa10.49□□□□□ -0.73
VPS39-201ENST00000318006 OR8U1Q8NH10 309 aa10.49□□□□□ -0.73
VPS39-201ENST00000318006 ABHD5Q8WTS1 349 aa10.49□□□□□ -0.73
VPS39-201ENST00000318006 CMTM3Q96MX0 182 aa10.49□□□□□ -0.73
VPS39-201ENST00000318006 TAS2R4Q9NYW5 299 aa10.49□□□□□ -0.73
VPS39-201ENST00000318006 OR14J1Q9UGF5 321 aa10.49□□□□□ -0.73
VPS39-201ENST00000318006 MMACHCQ9Y4U1 282 aa10.49□□□□□ -0.73
VPS39-201ENST00000318006 NRXN2Q9P2S2 1712 aa10.48□□□□□ -0.73
VPS39-201ENST00000318006 POLR2AP24928 1970 aaKnown RBP10.48□□□□□ -0.73
VPS39-201ENST00000318006 LINC00862A6NCI5 91 aa10.48□□□□□ -0.73
VPS39-201ENST00000318006 DSCR3O14972 297 aa10.48□□□□□ -0.73
VPS39-201ENST00000318006 SMIM6P0DI80 62 aa10.48□□□□□ -0.73
VPS39-201ENST00000318006 ZNF250P15622 560 aa10.48□□□□□ -0.73
VPS39-201ENST00000318006 HABP2Q14520 560 aaPredicted RBP10.48□□□□□ -0.73
VPS39-201ENST00000318006 LINC00346Q8IVM7 164 aa10.48□□□□□ -0.73
VPS39-201ENST00000318006 SPICQ8N5J4 248 aa10.48□□□□□ -0.73
VPS39-201ENST00000318006 SUCNR1Q9BXA5 334 aa10.48□□□□□ -0.73
VPS39-201ENST00000318006 OR51I2Q9H344 312 aa10.48□□□□□ -0.73
VPS39-201ENST00000318006 DAPP1Q9UN19 280 aa10.48□□□□□ -0.73
VPS39-201ENST00000318006 NSG1A0A0A6YYJ2 146 aa10.48□□□□□ -0.73
VPS39-201ENST00000318006 A0A1W2PR48 441 aa10.48□□□□□ -0.73
VPS39-201ENST00000318006 J3QR89 54 aa10.48□□□□□ -0.73
VPS39-201ENST00000318006 NDUFB6O95139 128 aa10.48□□□□□ -0.73
VPS39-201ENST00000318006 PCBD1P61457 104 aa10.48□□□□□ -0.73
VPS39-201ENST00000318006 EEF1A2Q05639 463 aaKnown RBP10.48□□□□□ -0.73
VPS39-201ENST00000318006 ZNF385BQ569K4 471 aa10.48□□□□□ -0.73
VPS39-201ENST00000318006 STAC2Q6ZMT1 411 aa10.48□□□□□ -0.73
VPS39-201ENST00000318006 MED25Q71SY5 747 aa10.48□□□□□ -0.73
VPS39-201ENST00000318006 GCNT2Q8N0V5 402 aa10.48□□□□□ -0.73
VPS39-201ENST00000318006 ZNF485Q8NCK3 441 aa10.48□□□□□ -0.73
VPS39-201ENST00000318006 GPR119Q8TDV5 335 aa10.48□□□□□ -0.73
VPS39-201ENST00000318006 EMG1Q92979 244 aaKnown RBP10.48□□□□□ -0.73
VPS39-201ENST00000318006 ULBP2Q9BZM5 246 aa10.48□□□□□ -0.73
VPS39-201ENST00000318006 HIPK2Q9H2X6 1198 aa10.48□□□□□ -0.73
VPS39-201ENST00000318006 NXT1Q9UKK6 140 aaKnown RBP10.48□□□□□ -0.73
VPS39-201ENST00000318006 SIT1Q9Y3P8 196 aa10.48□□□□□ -0.73
VPS39-201ENST00000318006 XRCC3O43542 346 aa10.48□□□□□ -0.73
VPS39-201ENST00000318006 ANGPTL7O43827 346 aa10.48□□□□□ -0.73
VPS39-201ENST00000318006 TMPRSS11DO60235 418 aa10.48□□□□□ -0.73
VPS39-201ENST00000318006 OPN1LWP04000 364 aa10.48□□□□□ -0.73
VPS39-201ENST00000318006 GLAP06280 429 aa10.48□□□□□ -0.73
VPS39-201ENST00000318006 FABP4P15090 132 aa10.48□□□□□ -0.73
VPS39-201ENST00000318006 SUMO1P63165 101 aaKnown RBP10.48□□□□□ -0.73
VPS39-201ENST00000318006 SMAD2Q15796 467 aaKnown RBP10.48□□□□□ -0.73
VPS39-201ENST00000318006 ZNF684Q5T5D7 378 aa10.48□□□□□ -0.73
VPS39-201ENST00000318006 FCRL6Q6DN72 434 aa10.48□□□□□ -0.73
VPS39-201ENST00000318006 SIGLECL1Q8N7X8 197 aa10.48□□□□□ -0.73
VPS39-201ENST00000318006 RXFP4Q8TDU9 374 aa10.48□□□□□ -0.73
VPS39-201ENST00000318006 NUDT22Q9BRQ3 303 aa10.48□□□□□ -0.73
VPS39-201ENST00000318006 C6orf106Q9H6K1 298 aaPredicted RBP10.48□□□□□ -0.73
VPS39-201ENST00000318006 ISG20L2Q9H9L3 353 aaKnown RBP10.48□□□□□ -0.73
VPS39-201ENST00000318006 PADI1Q9ULC6 663 aa10.48□□□□□ -0.73
VPS39-201ENST00000318006 RNF150Q9ULK6 438 aa10.48□□□□□ -0.73
VPS39-201ENST00000318006 QSER1Q2KHR3 1735 aa10.48□□□□□ -0.73
VPS39-201ENST00000318006 ANKRD61A6NGH8 418 aa10.47□□□□□ -0.73
VPS39-201ENST00000318006 PRR35P0CG20 571 aa10.47□□□□□ -0.73
VPS39-201ENST00000318006 APLNRP35414 380 aa10.47□□□□□ -0.73
VPS39-201ENST00000318006 MFAP5Q13361 173 aa10.47□□□□□ -0.73
VPS39-201ENST00000318006 GPNMBQ14956 572 aa10.47□□□□□ -0.73
VPS39-201ENST00000318006 C2orf76Q3KRA6 126 aa10.47□□□□□ -0.73
VPS39-201ENST00000318006 C12orf73Q69YU5 71 aa10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 6.3 ms