RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 LHFPL5Q8TAF8 219 aa9.53□□□□□ -0.88
USP28-201ENST00000003302 SCARB1Q8WTV0 552 aa9.53□□□□□ -0.88
USP28-201ENST00000003302 ZNF304Q9HCX3 659 aa9.53□□□□□ -0.88
USP28-201ENST00000003302 PRAMEF26H0Y7S4 382 aa9.52□□□□□ -0.88
USP28-201ENST00000003302 DCNP07585 359 aaKnown RBP9.52□□□□□ -0.88
USP28-201ENST00000003302 CSNK1EP49674 416 aaKnown RBP9.52□□□□□ -0.88
USP28-201ENST00000003302 RPL27P61353 136 aaKnown RBP9.52□□□□□ -0.88
USP28-201ENST00000003302 DEFA5Q01523 94 aa9.52□□□□□ -0.88
USP28-201ENST00000003302 ISXQ2M1V0 245 aa9.52□□□□□ -0.88
USP28-201ENST00000003302 CHCHD2P9Q5T1J5 151 aaPredicted RBP9.52□□□□□ -0.88
USP28-201ENST00000003302 C5orf24Q7Z6I8 188 aa9.52□□□□□ -0.88
USP28-201ENST00000003302 FJX1Q86VR8 437 aa9.52□□□□□ -0.88
USP28-201ENST00000003302 CDH26Q8IXH8 852 aa9.52□□□□□ -0.88
USP28-201ENST00000003302 CUTCQ9NTM9 273 aa9.52□□□□□ -0.88
USP28-201ENST00000003302 PTTG3PQ9NZH4 202 aa9.52□□□□□ -0.88
USP28-201ENST00000003302 KIF25Q9UIL4 384 aa9.52□□□□□ -0.88
USP28-201ENST00000003302 EXPH5Q8NEV8 1989 aa9.52□□□□□ -0.89
USP28-201ENST00000003302 TEX51A0A1B0GUA7 166 aa9.52□□□□□ -0.89
USP28-201ENST00000003302 XKRYO14609 159 aa9.52□□□□□ -0.89
USP28-201ENST00000003302 RABIFP47224 123 aa9.52□□□□□ -0.89
USP28-201ENST00000003302 PRKXP51817 358 aa9.52□□□□□ -0.89
USP28-201ENST00000003302 HSD17B7P56937 341 aa9.52□□□□□ -0.89
USP28-201ENST00000003302 CXADRP78310 365 aa9.52□□□□□ -0.89
USP28-201ENST00000003302 PLAC9Q5JTB6 97 aa9.52□□□□□ -0.89
USP28-201ENST00000003302 C1orf140Q5VVS0 124 aa9.52□□□□□ -0.89
USP28-201ENST00000003302 OR13C3Q8NGS6 347 aa9.52□□□□□ -0.89
USP28-201ENST00000003302 TMPRSS13Q9BYE2 586 aa9.52□□□□□ -0.89
USP28-201ENST00000003302 SELENOIQ9C0D9 397 aa9.52□□□□□ -0.89
USP28-201ENST00000003302 SYNDIG1Q9H7V2 258 aa9.52□□□□□ -0.89
USP28-201ENST00000003302 SLC2A4RGQ9NR83 387 aa9.52□□□□□ -0.89
USP28-201ENST00000003302 ESPL1Q14674 2120 aa9.52□□□□□ -0.89
USP28-201ENST00000003302 TMEM269A0A1B0GVZ9 245 aa9.52□□□□□ -0.89
USP28-201ENST00000003302 A0A1W2PNR3 127 aa9.52□□□□□ -0.89
USP28-201ENST00000003302 NAP1L6A6NFF2 107 aa9.52□□□□□ -0.89
USP28-201ENST00000003302 FTCDNL1E5RQL4 147 aa9.52□□□□□ -0.89
USP28-201ENST00000003302 SOCS1O15524 211 aa9.52□□□□□ -0.89
USP28-201ENST00000003302 SULT1B1O43704 296 aa9.52□□□□□ -0.89
USP28-201ENST00000003302 VSIG8P0DPA2 414 aa9.52□□□□□ -0.89
USP28-201ENST00000003302 PNMTP11086 282 aa9.52□□□□□ -0.89
USP28-201ENST00000003302 VAMP1P23763 118 aa9.52□□□□□ -0.89
USP28-201ENST00000003302 YPEL5P62699 121 aa9.52□□□□□ -0.89
USP28-201ENST00000003302 PLCXD2Q0VAA5 305 aa9.52□□□□□ -0.89
USP28-201ENST00000003302 CDNFQ49AH0 187 aa9.52□□□□□ -0.89
USP28-201ENST00000003302 COX15Q7KZN9 410 aa9.52□□□□□ -0.89
USP28-201ENST00000003302 SDR16C5Q8N3Y7 309 aa9.52□□□□□ -0.89
USP28-201ENST00000003302 NARS2Q96I59 477 aaKnown RBP9.52□□□□□ -0.89
USP28-201ENST00000003302 SLC19A3Q9BZV2 496 aa9.52□□□□□ -0.89
USP28-201ENST00000003302 SUSD2Q9UGT4 822 aa9.52□□□□□ -0.89
USP28-201ENST00000003302 NOP16Q9Y3C1 178 aaKnown RBP9.52□□□□□ -0.89
USP28-201ENST00000003302 RENP00797 406 aa9.52□□□□□ -0.89
USP28-201ENST00000003302 EGR3Q06889 387 aa9.52□□□□□ -0.89
USP28-201ENST00000003302 CARD17Q5XLA6 110 aa9.52□□□□□ -0.89
USP28-201ENST00000003302 BAIAP2L2Q6UXY1 529 aa9.52□□□□□ -0.89
USP28-201ENST00000003302 BEST3Q8N1M1 668 aa9.52□□□□□ -0.89
USP28-201ENST00000003302 CHST4Q8NCG5 386 aa9.52□□□□□ -0.89
USP28-201ENST00000003302 WWTR1Q9GZV5 400 aa9.52□□□□□ -0.89
USP28-201ENST00000003302 PRODH2Q9UF12 536 aa9.52□□□□□ -0.89
USP28-201ENST00000003302 ETV7Q9Y603 341 aa9.52□□□□□ -0.89
USP28-201ENST00000003302 A0A1W2PPC4 97 aa9.51□□□□□ -0.89
USP28-201ENST00000003302 SDCBPO00560 298 aaPredicted RBP9.51□□□□□ -0.89
USP28-201ENST00000003302 OR6A2O95222 327 aa9.51□□□□□ -0.89
USP28-201ENST00000003302 TTRP02766 147 aa9.51□□□□□ -0.89
USP28-201ENST00000003302 ERCC1P07992 297 aaPredicted RBP9.51□□□□□ -0.89
USP28-201ENST00000003302 MANEAQ5SRI9 462 aa9.51□□□□□ -0.89
USP28-201ENST00000003302 LCN10Q6JVE6 187 aa9.51□□□□□ -0.89
USP28-201ENST00000003302 C12orf45Q8N5I9 185 aaPredicted RBP9.51□□□□□ -0.89
USP28-201ENST00000003302 OR51F2Q8NH61 342 aa9.51□□□□□ -0.89
USP28-201ENST00000003302 MARCH1Q8TCQ1 289 aa9.51□□□□□ -0.89
USP28-201ENST00000003302 TBL1XR1Q9BZK7 514 aa9.51□□□□□ -0.89
USP28-201ENST00000003302 PPA2Q9H2U2 334 aa9.51□□□□□ -0.89
USP28-201ENST00000003302 GPR27Q9NS67 375 aa9.51□□□□□ -0.89
USP28-201ENST00000003302 MBD2Q9UBB5 411 aa9.51□□□□□ -0.89
USP28-201ENST00000003302 MMP17Q9ULZ9 603 aa9.51□□□□□ -0.89
USP28-201ENST00000003302 SKP1P63208 163 aa9.51□□□□□ -0.89
USP28-201ENST00000003302 OR2W3Q7Z3T1 314 aa9.51□□□□□ -0.89
USP28-201ENST00000003302 OR52N5Q8NH56 324 aa9.51□□□□□ -0.89
USP28-201ENST00000003302 KLHDC7BQ96G42 594 aa9.51□□□□□ -0.89
USP28-201ENST00000003302 VRK1Q99986 396 aaPredicted RBP9.51□□□□□ -0.89
USP28-201ENST00000003302 MRPS33Q9Y291 106 aaKnown RBP9.51□□□□□ -0.89
USP28-201ENST00000003302 DNAJC13O75165 2243 aa9.51□□□□□ -0.89
USP28-201ENST00000003302 KNTC1P50748 2209 aa9.51□□□□□ -0.89
USP28-201ENST00000003302 TOR1AO14656 332 aa9.51□□□□□ -0.89
USP28-201ENST00000003302 MSTNO14793 375 aa9.51□□□□□ -0.89
USP28-201ENST00000003302 GLI4P10075 376 aa9.51□□□□□ -0.89
USP28-201ENST00000003302 PLEKHN1Q494U1 663 aaPredicted RBP9.51□□□□□ -0.89
USP28-201ENST00000003302 CRIP3Q6Q6R5 217 aa9.51□□□□□ -0.89
USP28-201ENST00000003302 LRRC46Q96FV0 321 aa9.51□□□□□ -0.89
USP28-201ENST00000003302 LIN37Q96GY3 246 aaPredicted RBP9.51□□□□□ -0.89
USP28-201ENST00000003302 CMTM3Q96MX0 182 aa9.51□□□□□ -0.89
USP28-201ENST00000003302 ZNF285Q96NJ3 590 aa9.51□□□□□ -0.89
USP28-201ENST00000003302 FAM117AQ9C073 453 aa9.51□□□□□ -0.89
USP28-201ENST00000003302 PARP12Q9H0J9 701 aaKnown RBP9.51□□□□□ -0.89
USP28-201ENST00000003302 C1orf198Q9H425 327 aa9.51□□□□□ -0.89
USP28-201ENST00000003302 DIABLOQ9NR28 239 aa9.51□□□□□ -0.89
USP28-201ENST00000003302 GDF2Q9UK05 429 aaPredicted RBP9.51□□□□□ -0.89
USP28-201ENST00000003302 IGKV1D-8A0A087WSZ0 117 aa9.5□□□□□ -0.89
USP28-201ENST00000003302 MED19A0JLT2 244 aaPredicted RBP9.5□□□□□ -0.89
USP28-201ENST00000003302 TMEM200CA6NKL6 621 aa9.5□□□□□ -0.89
USP28-201ENST00000003302 ZNF736B4DX44 427 aaPredicted RBP9.5□□□□□ -0.89
USP28-201ENST00000003302 C3orf80F5H4A9 247 aa9.5□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 64.8 ms