RNA–Protein interactions for RNA: ENST00000618469.1

BRCA1-228, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 718 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-228ENST00000618469 RER1O15258 196 aa13.68□□□□□ -0.22
BRCA1-228ENST00000618469 HLA-DQA2P01906 255 aa13.68□□□□□ -0.22
BRCA1-228ENST00000618469 COX5BP10606 129 aa13.68□□□□□ -0.22
BRCA1-228ENST00000618469 GCH1P30793 250 aa13.68□□□□□ -0.22
BRCA1-228ENST00000618469 RASSF2P50749 326 aa13.68□□□□□ -0.22
BRCA1-228ENST00000618469 PPP1CBP62140 327 aa13.68□□□□□ -0.22
BRCA1-228ENST00000618469 GGTLC2Q14390 218 aa13.68□□□□□ -0.22
BRCA1-228ENST00000618469 KCNMB1Q16558 191 aa13.68□□□□□ -0.22
BRCA1-228ENST00000618469 TMEM179BQ7Z7N9 219 aa13.68□□□□□ -0.22
BRCA1-228ENST00000618469 ZBTB46Q86UZ6 589 aa13.68□□□□□ -0.22
BRCA1-228ENST00000618469 HIPK1Q86Z02 1210 aa13.68□□□□□ -0.22
BRCA1-228ENST00000618469 NPEPL1Q8NDH3 523 aa13.68□□□□□ -0.22
BRCA1-228ENST00000618469 SLC26A10Q8NG04 563 aa13.68□□□□□ -0.22
BRCA1-228ENST00000618469 OR2T33Q8NG76 320 aa13.68□□□□□ -0.22
BRCA1-228ENST00000618469 OR4Q3Q8NH05 313 aa13.68□□□□□ -0.22
BRCA1-228ENST00000618469 SLC25A40Q8TBP6 338 aa13.68□□□□□ -0.22
BRCA1-228ENST00000618469 TEX47Q8TBZ9 253 aa13.68□□□□□ -0.22
BRCA1-228ENST00000618469 SLC7A6Q92536 515 aa13.68□□□□□ -0.22
BRCA1-228ENST00000618469 C4orf45Q96LM5 186 aa13.68□□□□□ -0.22
BRCA1-228ENST00000618469 FEVQ99581 238 aa13.68□□□□□ -0.22
BRCA1-228ENST00000618469 OR2J1Q9GZK6 312 aa13.68□□□□□ -0.22
BRCA1-228ENST00000618469 BPESC1Q9GZL8 116 aa13.68□□□□□ -0.22
BRCA1-228ENST00000618469 YY1AP1Q9H869 796 aa13.68□□□□□ -0.22
BRCA1-228ENST00000618469 ELOVL3Q9HB03 270 aa13.68□□□□□ -0.22
BRCA1-228ENST00000618469 SLCO1C1Q9NYB5 712 aa13.68□□□□□ -0.22
BRCA1-228ENST00000618469 GPR160Q9UJ42 338 aa13.68□□□□□ -0.22
BRCA1-228ENST00000618469 LHFPL6Q9Y693 200 aa13.68□□□□□ -0.22
BRCA1-228ENST00000618469 OR6C6A6NF89 314 aa13.67□□□□□ -0.22
BRCA1-228ENST00000618469 VWC2LB2RUY7 222 aa13.67□□□□□ -0.22
BRCA1-228ENST00000618469 ICMTO60725 284 aa13.67□□□□□ -0.22
BRCA1-228ENST00000618469 ATP5HO75947 161 aa13.67□□□□□ -0.22
BRCA1-228ENST00000618469 NCR1O76036 304 aa13.67□□□□□ -0.22
BRCA1-228ENST00000618469 NGFP01138 241 aa13.67□□□□□ -0.22
BRCA1-228ENST00000618469 USF1P22415 310 aaPredicted RBP13.67□□□□□ -0.22
BRCA1-228ENST00000618469 PYCR1P32322 319 aa13.67□□□□□ -0.22
BRCA1-228ENST00000618469 MPV17P39210 176 aa13.67□□□□□ -0.22
BRCA1-228ENST00000618469 NR4A2P43354 598 aa13.67□□□□□ -0.22
BRCA1-228ENST00000618469 ARHGDIAP52565 204 aa13.67□□□□□ -0.22
BRCA1-228ENST00000618469 TEKQ02763 1124 aa13.67□□□□□ -0.22
BRCA1-228ENST00000618469 LOXL1Q08397 574 aaPredicted RBP13.67□□□□□ -0.22
BRCA1-228ENST00000618469 KRTAP24-1Q3LI83 254 aa13.67□□□□□ -0.22
BRCA1-228ENST00000618469 ZNF718Q3SXZ3 478 aa13.67□□□□□ -0.22
BRCA1-228ENST00000618469 SLC36A3Q495N2 470 aa13.67□□□□□ -0.22
BRCA1-228ENST00000618469 CCDC92Q53HC0 331 aaPredicted RBP13.67□□□□□ -0.22
BRCA1-228ENST00000618469 CORO6Q6QEF8 472 aa13.67□□□□□ -0.22
BRCA1-228ENST00000618469 ARL9Q6T311 187 aa13.67□□□□□ -0.22
BRCA1-228ENST00000618469 LINC00346Q8IVM7 164 aa13.67□□□□□ -0.22
BRCA1-228ENST00000618469 LNX2Q8N448 690 aa13.67□□□□□ -0.22
BRCA1-228ENST00000618469 SLC37A3Q8NCC5 494 aa13.67□□□□□ -0.22
BRCA1-228ENST00000618469 PROKR2Q8NFJ6 384 aa13.67□□□□□ -0.22
BRCA1-228ENST00000618469 OR9Q1Q8NGQ5 310 aa13.67□□□□□ -0.22
BRCA1-228ENST00000618469 UBASH3BQ8TF42 649 aa13.67□□□□□ -0.22
BRCA1-228ENST00000618469 GTF3AQ92664 365 aaKnown RBP13.67□□□□□ -0.22
BRCA1-228ENST00000618469 MARS2Q96GW9 593 aaKnown RBP13.67□□□□□ -0.22
BRCA1-228ENST00000618469 PDP1Q9P0J1 537 aaPredicted RBP13.67□□□□□ -0.22
BRCA1-228ENST00000618469 BAIAP2Q9UQB8 552 aa13.67□□□□□ -0.22
BRCA1-228ENST00000618469 C17orf100A8MU93 164 aa13.66□□□□□ -0.22
BRCA1-228ENST00000618469 LYNX1G3V0Z9 82 aa13.66□□□□□ -0.22
BRCA1-228ENST00000618469 H3BN98 237 aa13.66□□□□□ -0.22
BRCA1-228ENST00000618469 TFP02787 698 aa13.66□□□□□ -0.22
BRCA1-228ENST00000618469 HPXP02790 462 aa13.66□□□□□ -0.22
BRCA1-228ENST00000618469 MT-ND5P03915 603 aa13.66□□□□□ -0.22
BRCA1-228ENST00000618469 LYNX1P0DP58 116 aa13.66□□□□□ -0.22
BRCA1-228ENST00000618469 COX10Q12887 443 aa13.66□□□□□ -0.22
BRCA1-228ENST00000618469 CRMP1Q14194 572 aa13.66□□□□□ -0.22
BRCA1-228ENST00000618469 TMEM249Q2WGJ8 235 aa13.66□□□□□ -0.22
BRCA1-228ENST00000618469 CHRFAM7AQ494W8 412 aa13.66□□□□□ -0.22
BRCA1-228ENST00000618469 TMEM255AQ5JRV8 349 aa13.66□□□□□ -0.22
BRCA1-228ENST00000618469 TMEM154Q6P9G4 183 aa13.66□□□□□ -0.22
BRCA1-228ENST00000618469 HS3ST5Q8IZT8 346 aa13.66□□□□□ -0.22
BRCA1-228ENST00000618469 ZNF786Q8N393 782 aa13.66□□□□□ -0.22
BRCA1-228ENST00000618469 IQCF1Q8N6M8 205 aa13.66□□□□□ -0.22
BRCA1-228ENST00000618469 GJC3Q8NFK1 279 aa13.66□□□□□ -0.22
BRCA1-228ENST00000618469 OR2T4Q8NH00 348 aa13.66□□□□□ -0.22
BRCA1-228ENST00000618469 OR1F12Q8NHA8 337 aa13.66□□□□□ -0.22
BRCA1-228ENST00000618469 KLF14Q8TD94 323 aaPredicted RBP13.66□□□□□ -0.22
BRCA1-228ENST00000618469 HDHD2Q9H0R4 259 aa13.66□□□□□ -0.22
BRCA1-228ENST00000618469 HINT3Q9NQE9 182 aaKnown RBP13.66□□□□□ -0.22
BRCA1-228ENST00000618469 ATPIF1Q9UII2 106 aa13.66□□□□□ -0.22
BRCA1-228ENST00000618469 GRIP1Q9Y3R0 1128 aa13.66□□□□□ -0.22
BRCA1-228ENST00000618469 IGHV4-61A0A0C4DH41 118 aa13.65□□□□□ -0.22
BRCA1-228ENST00000618469 H3BSA7 217 aa13.65□□□□□ -0.22
BRCA1-228ENST00000618469 CD5LO43866 347 aa13.65□□□□□ -0.22
BRCA1-228ENST00000618469 IFNGP01579 166 aa13.65□□□□□ -0.22
BRCA1-228ENST00000618469 IGHV3-13P01766 116 aa13.65□□□□□ -0.22
BRCA1-228ENST00000618469 DBHP09172 617 aa13.65□□□□□ -0.22
BRCA1-228ENST00000618469 MAGEB1P43366 347 aa13.65□□□□□ -0.22
BRCA1-228ENST00000618469 ELFN2Q5R3F8 820 aa13.65□□□□□ -0.22
BRCA1-228ENST00000618469 MBNL2Q5VZF2 373 aaKnown RBP13.65□□□□□ -0.22
BRCA1-228ENST00000618469 CD300LDQ6UXZ3 194 aa13.65□□□□□ -0.22
BRCA1-228ENST00000618469 CFAP77Q6ZQR2 320 aa13.65□□□□□ -0.22
BRCA1-228ENST00000618469 C1orf174Q8IYL3 243 aa13.65□□□□□ -0.22
BRCA1-228ENST00000618469 OR51L1Q8NGJ5 315 aa13.65□□□□□ -0.22
BRCA1-228ENST00000618469 SLCO4A1Q96BD0 722 aa13.65□□□□□ -0.22
BRCA1-228ENST00000618469 POFUT1Q9H488 388 aa13.65□□□□□ -0.22
BRCA1-228ENST00000618469 MRPL22Q9NWU5 206 aaKnown RBP13.65□□□□□ -0.22
BRCA1-228ENST00000618469 DNAJB9Q9UBS3 223 aa13.65□□□□□ -0.22
BRCA1-228ENST00000618469 KLHL21Q9UJP4 597 aa13.65□□□□□ -0.22
BRCA1-228ENST00000618469 PLSCR5A0PG75 271 aa13.64□□□□□ -0.23
BRCA1-228ENST00000618469 TVP23AA6NH52 213 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms