RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 GABARAPL3Q9BY60 117 aa16.75■□□□□ 0.27
SHKBP1-221ENST00000599833 POFUT1Q9H488 388 aa16.75■□□□□ 0.27
SHKBP1-221ENST00000599833 CDH20Q9HBT6 801 aa16.75■□□□□ 0.27
SHKBP1-221ENST00000599833 KRT84Q9NSB2 600 aa16.75■□□□□ 0.27
SHKBP1-221ENST00000599833 KIF17Q9P2E2 1029 aa16.75■□□□□ 0.27
SHKBP1-221ENST00000599833 ATPIF1Q9UII2 106 aa16.75■□□□□ 0.27
SHKBP1-221ENST00000599833 ZFHX3Q15911 3703 aa16.74■□□□□ 0.27
SHKBP1-221ENST00000599833 IFNGP01579 166 aa16.74■□□□□ 0.27
SHKBP1-221ENST00000599833 DBHP09172 617 aa16.74■□□□□ 0.27
SHKBP1-221ENST00000599833 ZNF3P17036 446 aa16.74■□□□□ 0.27
SHKBP1-221ENST00000599833 ANOS1P23352 680 aa16.74■□□□□ 0.27
SHKBP1-221ENST00000599833 CENPAP49450 140 aa16.74■□□□□ 0.27
SHKBP1-221ENST00000599833 EVX1P49640 407 aa16.74■□□□□ 0.27
SHKBP1-221ENST00000599833 GDI2P50395 445 aaKnown RBP16.74■□□□□ 0.27
SHKBP1-221ENST00000599833 ATP5J2P56134 94 aa16.74■□□□□ 0.27
SHKBP1-221ENST00000599833 GALK2Q01415 458 aa16.74■□□□□ 0.27
SHKBP1-221ENST00000599833 RAB35Q15286 201 aa16.74■□□□□ 0.27
SHKBP1-221ENST00000599833 SLX4IPQ5VYV7 408 aa16.74■□□□□ 0.27
SHKBP1-221ENST00000599833 SHEQ5VZ18 495 aa16.74■□□□□ 0.27
SHKBP1-221ENST00000599833 C12orf73Q69YU5 71 aa16.74■□□□□ 0.27
SHKBP1-221ENST00000599833 ICA1LQ8NDH6 482 aa16.74■□□□□ 0.27
SHKBP1-221ENST00000599833 BBS1Q8NFJ9 593 aa16.74■□□□□ 0.27
SHKBP1-221ENST00000599833 OR1F12Q8NHA8 337 aa16.74■□□□□ 0.27
SHKBP1-221ENST00000599833 OR51B6Q9H340 312 aa16.74■□□□□ 0.27
SHKBP1-221ENST00000599833 PLEK2Q9NYT0 353 aa16.74■□□□□ 0.27
SHKBP1-221ENST00000599833 FZR1Q9UM11 496 aa16.74■□□□□ 0.27
SHKBP1-221ENST00000599833 CMAHPQ9Y471 501 aa16.74■□□□□ 0.27
SHKBP1-221ENST00000599833 ANKRD65E5RJM6 399 aa16.73■□□□□ 0.27
SHKBP1-221ENST00000599833 M0R129 80 aa16.73■□□□□ 0.27
SHKBP1-221ENST00000599833 CLPTM1O96005 669 aa16.73■□□□□ 0.27
SHKBP1-221ENST00000599833 HMGN1P05114 100 aa16.73■□□□□ 0.27
SHKBP1-221ENST00000599833 ALPLP05186 524 aa16.73■□□□□ 0.27
SHKBP1-221ENST00000599833 HTR5AP47898 357 aa16.73■□□□□ 0.27
SHKBP1-221ENST00000599833 PPOXP50336 477 aa16.73■□□□□ 0.27
SHKBP1-221ENST00000599833 ZSCAN26Q16670 478 aa16.73■□□□□ 0.27
SHKBP1-221ENST00000599833 TEX30Q5JUR7 227 aa16.73■□□□□ 0.27
SHKBP1-221ENST00000599833 PLBD1Q6P4A8 553 aa16.73■□□□□ 0.27
SHKBP1-221ENST00000599833 LURAP1LQ8IV03 231 aa16.73■□□□□ 0.27
SHKBP1-221ENST00000599833 TIGD4Q8IY51 512 aa16.73■□□□□ 0.27
SHKBP1-221ENST00000599833 ALDH16A1Q8IZ83 802 aa16.73■□□□□ 0.27
SHKBP1-221ENST00000599833 GJC3Q8NFK1 279 aa16.73■□□□□ 0.27
SHKBP1-221ENST00000599833 MARS2Q96GW9 593 aaKnown RBP16.73■□□□□ 0.27
SHKBP1-221ENST00000599833 C4orf45Q96LM5 186 aa16.73■□□□□ 0.27
SHKBP1-221ENST00000599833 SORCS2Q96PQ0 1159 aa16.73■□□□□ 0.27
SHKBP1-221ENST00000599833 COQ7Q99807 217 aa16.73■□□□□ 0.27
SHKBP1-221ENST00000599833 USE1Q9NZ43 259 aa16.73■□□□□ 0.27
SHKBP1-221ENST00000599833 KCNG2Q9UJ96 466 aa16.73■□□□□ 0.27
SHKBP1-221ENST00000599833 NDRG4Q9ULP0 352 aaKnown RBP16.73■□□□□ 0.27
SHKBP1-221ENST00000599833 SPEF1Q9Y4P9 236 aa16.73■□□□□ 0.27
SHKBP1-221ENST00000599833 MTORP42345 2549 aa16.72■□□□□ 0.27
SHKBP1-221ENST00000599833 CCDC182A6NF36 153 aa16.72■□□□□ 0.27
SHKBP1-221ENST00000599833 PRKYO43930 277 aa16.72■□□□□ 0.27
SHKBP1-221ENST00000599833 GLCEO94923 617 aa16.72■□□□□ 0.27
SHKBP1-221ENST00000599833 CCNOP22674 350 aa16.72■□□□□ 0.27
SHKBP1-221ENST00000599833 IGFBP5P24593 272 aa16.72■□□□□ 0.27
SHKBP1-221ENST00000599833 ELFN2Q5R3F8 820 aa16.72■□□□□ 0.27
SHKBP1-221ENST00000599833 CPOQ8IVL8 374 aa16.72■□□□□ 0.27
SHKBP1-221ENST00000599833 ZCCHC24Q8N2G6 241 aaKnown RBP16.72■□□□□ 0.27
SHKBP1-221ENST00000599833 ST7LQ8TDW4 575 aa16.72■□□□□ 0.27
SHKBP1-221ENST00000599833 SYT3Q9BQG1 590 aa16.72■□□□□ 0.27
SHKBP1-221ENST00000599833 BCL2L14Q9BZR8 327 aa16.72■□□□□ 0.27
SHKBP1-221ENST00000599833 HDHD2Q9H0R4 259 aa16.72■□□□□ 0.27
SHKBP1-221ENST00000599833 CR1P17927 2039 aa16.71■□□□□ 0.27
SHKBP1-221ENST00000599833 EI24O14681 340 aa16.71■□□□□ 0.27
SHKBP1-221ENST00000599833 LY6HO94772 140 aa16.71■□□□□ 0.27
SHKBP1-221ENST00000599833 OTX1P32242 354 aaPredicted RBP16.71■□□□□ 0.27
SHKBP1-221ENST00000599833 MPV17P39210 176 aa16.71■□□□□ 0.27
SHKBP1-221ENST00000599833 RAD52P43351 418 aa16.71■□□□□ 0.27
SHKBP1-221ENST00000599833 ENTPD1P49961 510 aa16.71■□□□□ 0.27
SHKBP1-221ENST00000599833 RPS23P62266 143 aaKnown RBP16.71■□□□□ 0.27
SHKBP1-221ENST00000599833 RGS7BPQ6MZT1 257 aaPredicted RBP16.71■□□□□ 0.27
SHKBP1-221ENST00000599833 COLCA1Q6ZS62 124 aa16.71■□□□□ 0.27
SHKBP1-221ENST00000599833 PQLC1Q8N2U9 271 aa16.71■□□□□ 0.27
SHKBP1-221ENST00000599833 OR10H5Q8NGA6 315 aa16.71■□□□□ 0.27
SHKBP1-221ENST00000599833 OR1J1Q8NGS3 322 aa16.71■□□□□ 0.27
SHKBP1-221ENST00000599833 TRMT61AQ96FX7 289 aaKnown RBP16.71■□□□□ 0.27
SHKBP1-221ENST00000599833 DDX28Q9NUL7 540 aaKnown RBP16.71■□□□□ 0.27
SHKBP1-221ENST00000599833 TBCCD1Q9NVR7 557 aa16.71■□□□□ 0.27
SHKBP1-221ENST00000599833 TVP23BQ9NYZ1 205 aa16.71■□□□□ 0.27
SHKBP1-221ENST00000599833 SVEP1Q4LDE5 3571 aa16.7■□□□□ 0.26
SHKBP1-221ENST00000599833 PRR23D1E9PI22 279 aaPredicted RBP16.7■□□□□ 0.26
SHKBP1-221ENST00000599833 HLA-DQA2P01906 255 aa16.7■□□□□ 0.26
SHKBP1-221ENST00000599833 PRR23D2P0DMB1 279 aaPredicted RBP16.7■□□□□ 0.26
SHKBP1-221ENST00000599833 FMO3P31513 532 aa16.7■□□□□ 0.26
SHKBP1-221ENST00000599833 SNRPD2P62316 118 aaKnown RBP16.7■□□□□ 0.26
SHKBP1-221ENST00000599833 SPATA46Q5T0L3 261 aa16.7■□□□□ 0.26
SHKBP1-221ENST00000599833 AADACL4Q5VUY2 407 aa16.7■□□□□ 0.26
SHKBP1-221ENST00000599833 BCDIN3DQ7Z5W3 292 aaKnown RBP16.7■□□□□ 0.26
SHKBP1-221ENST00000599833 CIARTQ8N365 385 aaPredicted RBP16.7■□□□□ 0.26
SHKBP1-221ENST00000599833 SLC25A40Q8TBP6 338 aa16.7■□□□□ 0.26
SHKBP1-221ENST00000599833 AMELYQ99218 206 aa16.7■□□□□ 0.26
SHKBP1-221ENST00000599833 SLC29A1Q99808 456 aa16.7■□□□□ 0.26
SHKBP1-221ENST00000599833 RBM4BQ9BQ04 359 aaKnown RBP16.7■□□□□ 0.26
SHKBP1-221ENST00000599833 POLR1DQ9Y2S0 133 aa16.7■□□□□ 0.26
SHKBP1-221ENST00000599833 PRODHO43272 600 aa16.69■□□□□ 0.26
SHKBP1-221ENST00000599833 IGHV3-13P01766 116 aa16.69■□□□□ 0.26
SHKBP1-221ENST00000599833 ALDH3A2P51648 485 aa16.69■□□□□ 0.26
SHKBP1-221ENST00000599833 MAD2L1BPQ15013 274 aaPredicted RBP16.69■□□□□ 0.26
SHKBP1-221ENST00000599833 SNAPC1Q16533 368 aa16.69■□□□□ 0.26
SHKBP1-221ENST00000599833 MBNL2Q5VZF2 373 aaKnown RBP16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms