RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 HIST2H3AQ71DI3 136 aa13.54□□□□□ -0.24
UPF1-206ENST00000598471 MRGPRGQ86SM5 289 aa13.54□□□□□ -0.24
UPF1-206ENST00000598471 SKA3Q8IX90 412 aa13.54□□□□□ -0.24
UPF1-206ENST00000598471 GABRG1Q8N1C3 465 aa13.54□□□□□ -0.24
UPF1-206ENST00000598471 ZNF433Q8N7K0 673 aaPredicted RBP13.54□□□□□ -0.24
UPF1-206ENST00000598471 GALNT11Q8NCW6 608 aa13.54□□□□□ -0.24
UPF1-206ENST00000598471 BCL2L2Q92843 193 aaPredicted RBP13.54□□□□□ -0.24
UPF1-206ENST00000598471 TMIGD2Q96BF3 282 aa13.54□□□□□ -0.24
UPF1-206ENST00000598471 FBXO17Q96EF6 278 aa13.54□□□□□ -0.24
UPF1-206ENST00000598471 PELI1Q96FA3 418 aa13.54□□□□□ -0.24
UPF1-206ENST00000598471 HDHD2Q9H0R4 259 aa13.54□□□□□ -0.24
UPF1-206ENST00000598471 ACOXLQ9NUZ1 547 aa13.54□□□□□ -0.24
UPF1-206ENST00000598471 PLEK2Q9NYT0 353 aa13.54□□□□□ -0.24
UPF1-206ENST00000598471 LRP12Q9Y561 859 aa13.54□□□□□ -0.24
UPF1-206ENST00000598471 COL6A6A6NMZ7 2263 aa13.53□□□□□ -0.24
UPF1-206ENST00000598471 DPPA5A6NC42 116 aa13.53□□□□□ -0.24
UPF1-206ENST00000598471 PRR32B1ATL7 298 aa13.53□□□□□ -0.24
UPF1-206ENST00000598471 PYCARD-AS1I3L0S3 204 aa13.53□□□□□ -0.24
UPF1-206ENST00000598471 RER1O15258 196 aa13.53□□□□□ -0.24
UPF1-206ENST00000598471 MAGEB4O15481 346 aaPredicted RBP13.53□□□□□ -0.24
UPF1-206ENST00000598471 SGCEO43556 437 aa13.53□□□□□ -0.24
UPF1-206ENST00000598471 DOK2O60496 412 aa13.53□□□□□ -0.24
UPF1-206ENST00000598471 LYZL6O75951 148 aa13.53□□□□□ -0.24
UPF1-206ENST00000598471 RPP14O95059 124 aaKnown RBP13.53□□□□□ -0.24
UPF1-206ENST00000598471 ABHD16AO95870 558 aa13.53□□□□□ -0.24
UPF1-206ENST00000598471 CPEP16870 476 aa13.53□□□□□ -0.24
UPF1-206ENST00000598471 ZNF32P17041 273 aa13.53□□□□□ -0.24
UPF1-206ENST00000598471 DCTDP32321 178 aa13.53□□□□□ -0.24
UPF1-206ENST00000598471 OPRL1P41146 370 aa13.53□□□□□ -0.24
UPF1-206ENST00000598471 TGM4P49221 684 aa13.53□□□□□ -0.24
UPF1-206ENST00000598471 UBE2NP61088 152 aaKnown RBP13.53□□□□□ -0.24
UPF1-206ENST00000598471 MRPL49Q13405 166 aaKnown RBP13.53□□□□□ -0.24
UPF1-206ENST00000598471 GPR50Q13585 617 aa13.53□□□□□ -0.24
UPF1-206ENST00000598471 IGFBP7Q16270 282 aa13.53□□□□□ -0.24
UPF1-206ENST00000598471 TBRG1Q3YBR2 411 aa13.53□□□□□ -0.24
UPF1-206ENST00000598471 LIPNQ5VXI9 398 aa13.53□□□□□ -0.24
UPF1-206ENST00000598471 MTFR2Q6P444 385 aa13.53□□□□□ -0.24
UPF1-206ENST00000598471 RPL22L1Q6P5R6 122 aaKnown RBP13.53□□□□□ -0.24
UPF1-206ENST00000598471 ALDH16A1Q8IZ83 802 aa13.53□□□□□ -0.24
UPF1-206ENST00000598471 C17orf78Q8N4C9 275 aa13.53□□□□□ -0.24
UPF1-206ENST00000598471 ATF6BQ99941 703 aa13.53□□□□□ -0.24
UPF1-206ENST00000598471 DDX28Q9NUL7 540 aaKnown RBP13.53□□□□□ -0.24
UPF1-206ENST00000598471 A0A1B0GUH1 482 aa13.52□□□□□ -0.25
UPF1-206ENST00000598471 RAD51DO75771 328 aa13.52□□□□□ -0.25
UPF1-206ENST00000598471 APOC1P02654 83 aa13.52□□□□□ -0.25
UPF1-206ENST00000598471 CD79AP11912 226 aa13.52□□□□□ -0.25
UPF1-206ENST00000598471 CD36P16671 472 aa13.52□□□□□ -0.25
UPF1-206ENST00000598471 IL32P24001 234 aa13.52□□□□□ -0.25
UPF1-206ENST00000598471 LIPAP38571 399 aa13.52□□□□□ -0.25
UPF1-206ENST00000598471 RGS6P49758 472 aa13.52□□□□□ -0.25
UPF1-206ENST00000598471 TLE1Q04724 770 aa13.52□□□□□ -0.25
UPF1-206ENST00000598471 PLP2Q04941 152 aa13.52□□□□□ -0.25
UPF1-206ENST00000598471 TPBGQ13641 420 aa13.52□□□□□ -0.25
UPF1-206ENST00000598471 GABRA6Q16445 453 aa13.52□□□□□ -0.25
UPF1-206ENST00000598471 TIMM50Q3ZCQ8 353 aa13.52□□□□□ -0.25
UPF1-206ENST00000598471 LIPKQ5VXJ0 399 aa13.52□□□□□ -0.25
UPF1-206ENST00000598471 BHLHA15Q7RTS1 189 aaPredicted RBP13.52□□□□□ -0.25
UPF1-206ENST00000598471 LUZP2Q86TE4 346 aa13.52□□□□□ -0.25
UPF1-206ENST00000598471 CXorf67Q86X51 503 aaPredicted RBP13.52□□□□□ -0.25
UPF1-206ENST00000598471 CLVS1Q8IUQ0 354 aaPredicted RBP13.52□□□□□ -0.25
UPF1-206ENST00000598471 SPTSSAQ969W0 71 aa13.52□□□□□ -0.25
UPF1-206ENST00000598471 BOD1Q96IK1 185 aa13.52□□□□□ -0.25
UPF1-206ENST00000598471 COQ7Q99807 217 aa13.52□□□□□ -0.25
UPF1-206ENST00000598471 OR2H1Q9GZK4 316 aa13.52□□□□□ -0.25
UPF1-206ENST00000598471 FAM192AQ9GZU8 254 aa13.52□□□□□ -0.25
UPF1-206ENST00000598471 COQ3Q9NZJ6 369 aa13.52□□□□□ -0.25
UPF1-206ENST00000598471 ATPIF1Q9UII2 106 aa13.52□□□□□ -0.25
UPF1-206ENST00000598471 SLC5A6Q9Y289 635 aa13.52□□□□□ -0.25
UPF1-206ENST00000598471 PHF3Q92576 2039 aaKnown RBP13.52□□□□□ -0.25
UPF1-206ENST00000598471 ZGRF1Q86YA3 2104 aa13.52□□□□□ -0.25
UPF1-206ENST00000598471 SHANK1Q9Y566 2161 aa13.52□□□□□ -0.25
UPF1-206ENST00000598471 CCDC160A6NGH7 325 aa13.51□□□□□ -0.25
UPF1-206ENST00000598471 WNT11O96014 354 aa13.51□□□□□ -0.25
UPF1-206ENST00000598471 LALBAP00709 142 aa13.51□□□□□ -0.25
UPF1-206ENST00000598471 MMP7P09237 267 aaPredicted RBP13.51□□□□□ -0.25
UPF1-206ENST00000598471 CD53P19397 219 aa13.51□□□□□ -0.25
UPF1-206ENST00000598471 CELP19835 753 aa13.51□□□□□ -0.25
UPF1-206ENST00000598471 PSMB10P40306 273 aa13.51□□□□□ -0.25
UPF1-206ENST00000598471 PSG4Q00888 419 aa13.51□□□□□ -0.25
UPF1-206ENST00000598471 CDK5R1Q15078 307 aa13.51□□□□□ -0.25
UPF1-206ENST00000598471 HIKESHIQ53FT3 197 aa13.51□□□□□ -0.25
UPF1-206ENST00000598471 CCDC92Q53HC0 331 aaPredicted RBP13.51□□□□□ -0.25
UPF1-206ENST00000598471 SFRP5Q5T4F7 317 aa13.51□□□□□ -0.25
UPF1-206ENST00000598471 GPR107Q5VW38 600 aa13.51□□□□□ -0.25
UPF1-206ENST00000598471 ARL9Q6T311 187 aa13.51□□□□□ -0.25
UPF1-206ENST00000598471 NCCRP1Q6ZVX7 275 aaPredicted RBP13.51□□□□□ -0.25
UPF1-206ENST00000598471 P2RY8Q86VZ1 359 aa13.51□□□□□ -0.25
UPF1-206ENST00000598471 OR10S1Q8NGN2 331 aa13.51□□□□□ -0.25
UPF1-206ENST00000598471 OR1F12Q8NHA8 337 aa13.51□□□□□ -0.25
UPF1-206ENST00000598471 ASB5Q8WWX0 329 aa13.51□□□□□ -0.25
UPF1-206ENST00000598471 YIPF6Q96EC8 236 aa13.51□□□□□ -0.25
UPF1-206ENST00000598471 KCNJ15Q99712 375 aa13.51□□□□□ -0.25
UPF1-206ENST00000598471 HDHD5Q9BXW7 423 aa13.51□□□□□ -0.25
UPF1-206ENST00000598471 MOB1AQ9H8S9 216 aa13.51□□□□□ -0.25
UPF1-206ENST00000598471 OBP2BQ9NPH6 170 aa13.51□□□□□ -0.25
UPF1-206ENST00000598471 PNRC2Q9NPJ4 139 aaKnown RBP13.51□□□□□ -0.25
UPF1-206ENST00000598471 NDUFB11Q9NX14 153 aa13.51□□□□□ -0.25
UPF1-206ENST00000598471 ELOVL5Q9NYP7 299 aa13.51□□□□□ -0.25
UPF1-206ENST00000598471 FBXL3Q9UKT7 428 aa13.51□□□□□ -0.25
UPF1-206ENST00000598471 GRIP1Q9Y3R0 1128 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms