RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 HLA-HP01893 362 aa13.05□□□□□ -0.32
TRIM28-207ENST00000597136 CDK1P06493 297 aa13.05□□□□□ -0.32
TRIM28-207ENST00000597136 HTR1AP08908 422 aa13.05□□□□□ -0.32
TRIM28-207ENST00000597136 OR8G3PP0DMU2 310 aa13.05□□□□□ -0.32
TRIM28-207ENST00000597136 DCKP27707 260 aa13.05□□□□□ -0.32
TRIM28-207ENST00000597136 C21orf33P30042 268 aaPredicted RBP13.05□□□□□ -0.32
TRIM28-207ENST00000597136 RPS27P42677 84 aaKnown RBP13.05□□□□□ -0.32
TRIM28-207ENST00000597136 LSM6P62312 80 aaKnown RBP13.05□□□□□ -0.32
TRIM28-207ENST00000597136 DPY19L4Q7Z388 723 aa13.05□□□□□ -0.32
TRIM28-207ENST00000597136 CDC20BQ86Y33 519 aa13.05□□□□□ -0.32
TRIM28-207ENST00000597136 SLC35F2Q8IXU6 374 aa13.05□□□□□ -0.32
TRIM28-207ENST00000597136 C17orf78Q8N4C9 275 aa13.05□□□□□ -0.32
TRIM28-207ENST00000597136 OR10H5Q8NGA6 315 aa13.05□□□□□ -0.32
TRIM28-207ENST00000597136 OR6N2Q8NGY6 317 aa13.05□□□□□ -0.32
TRIM28-207ENST00000597136 SIGLEC11Q96RL6 698 aa13.05□□□□□ -0.32
TRIM28-207ENST00000597136 ZNF416Q9BWM5 594 aa13.05□□□□□ -0.32
TRIM28-207ENST00000597136 NOX3Q9HBY0 568 aa13.05□□□□□ -0.32
TRIM28-207ENST00000597136 CCNB1IP1Q9NPC3 277 aa13.05□□□□□ -0.32
TRIM28-207ENST00000597136 KCNG2Q9UJ96 466 aa13.05□□□□□ -0.32
TRIM28-207ENST00000597136 DIMT1Q9UNQ2 313 aaKnown RBP13.05□□□□□ -0.32
TRIM28-207ENST00000597136 RGS10O43665 173 aa13.04□□□□□ -0.32
TRIM28-207ENST00000597136 RAB36O95755 333 aa13.04□□□□□ -0.32
TRIM28-207ENST00000597136 RPSAP08865 295 aaKnown RBP13.04□□□□□ -0.32
TRIM28-207ENST00000597136 OR2T7P0C7T2 308 aa13.04□□□□□ -0.32
TRIM28-207ENST00000597136 CDH15P55291 814 aa13.04□□□□□ -0.32
TRIM28-207ENST00000597136 BSPH1Q075Z2 132 aa13.04□□□□□ -0.32
TRIM28-207ENST00000597136 ENDOGQ14249 297 aaKnown RBP13.04□□□□□ -0.32
TRIM28-207ENST00000597136 BEX5Q5H9J7 111 aa13.04□□□□□ -0.32
TRIM28-207ENST00000597136 NCMAPQ5T1S8 102 aa13.04□□□□□ -0.32
TRIM28-207ENST00000597136 LRRC18Q8N456 261 aa13.04□□□□□ -0.32
TRIM28-207ENST00000597136 ACBD7Q8N6N7 88 aa13.04□□□□□ -0.32
TRIM28-207ENST00000597136 OR10H4Q8NGA5 316 aa13.04□□□□□ -0.32
TRIM28-207ENST00000597136 OR2T27Q8NH04 317 aa13.04□□□□□ -0.32
TRIM28-207ENST00000597136 OTOSQ8NHW6 89 aa13.04□□□□□ -0.32
TRIM28-207ENST00000597136 CDADC1Q9BWV3 514 aa13.04□□□□□ -0.32
TRIM28-207ENST00000597136 JAM3Q9BX67 310 aa13.04□□□□□ -0.32
TRIM28-207ENST00000597136 CLEC4MQ9H2X3 399 aaPredicted RBP13.04□□□□□ -0.32
TRIM28-207ENST00000597136 B3GNT2Q9NY97 397 aa13.04□□□□□ -0.32
TRIM28-207ENST00000597136 CYB5R1Q9UHQ9 305 aa13.04□□□□□ -0.32
TRIM28-207ENST00000597136 AMDHD2Q9Y303 409 aa13.04□□□□□ -0.32
TRIM28-207ENST00000597136 LHFPL6Q9Y693 200 aa13.04□□□□□ -0.32
TRIM28-207ENST00000597136 ARPC4-TTLL3A0A0A6YYG9 625 aa13.03□□□□□ -0.32
TRIM28-207ENST00000597136 A0A1W2PQL4 384 aaPredicted RBP13.03□□□□□ -0.32
TRIM28-207ENST00000597136 C12orf71A8MTZ7 269 aa13.03□□□□□ -0.32
TRIM28-207ENST00000597136 M0R1B8 84 aa13.03□□□□□ -0.32
TRIM28-207ENST00000597136 TMCC2O75069 709 aa13.03□□□□□ -0.32
TRIM28-207ENST00000597136 FARS2O95363 451 aaKnown RBP13.03□□□□□ -0.32
TRIM28-207ENST00000597136 CELA3BP08861 270 aa13.03□□□□□ -0.32
TRIM28-207ENST00000597136 CST2P09228 141 aa13.03□□□□□ -0.32
TRIM28-207ENST00000597136 SPARCP09486 303 aa13.03□□□□□ -0.32
TRIM28-207ENST00000597136 CAPZA2P47755 286 aa13.03□□□□□ -0.32
TRIM28-207ENST00000597136 UBE2NP61088 152 aaKnown RBP13.03□□□□□ -0.32
TRIM28-207ENST00000597136 PRSS48Q7RTY5 328 aa13.03□□□□□ -0.32
TRIM28-207ENST00000597136 MYPOPQ86VE0 399 aaPredicted RBP13.03□□□□□ -0.32
TRIM28-207ENST00000597136 TSPAN14Q8NG11 270 aa13.03□□□□□ -0.32
TRIM28-207ENST00000597136 NEUROG1Q92886 237 aa13.03□□□□□ -0.32
TRIM28-207ENST00000597136 FBXO17Q96EF6 278 aa13.03□□□□□ -0.32
TRIM28-207ENST00000597136 MNTQ99583 582 aa13.03□□□□□ -0.32
TRIM28-207ENST00000597136 TBX5Q99593 518 aa13.03□□□□□ -0.32
TRIM28-207ENST00000597136 COPS3Q9UNS2 423 aa13.03□□□□□ -0.32
TRIM28-207ENST00000597136 POLR1DQ9Y2S0 133 aa13.03□□□□□ -0.32
TRIM28-207ENST00000597136 KLHDC2Q9Y2U9 406 aa13.03□□□□□ -0.32
TRIM28-207ENST00000597136 DAPL1A0PJW8 107 aa13.03□□□□□ -0.32
TRIM28-207ENST00000597136 MAGEA13PA6NCF6 341 aa13.03□□□□□ -0.32
TRIM28-207ENST00000597136 MRPS14O60783 128 aaKnown RBP13.03□□□□□ -0.32
TRIM28-207ENST00000597136 MT-ND2P03891 347 aa13.03□□□□□ -0.32
TRIM28-207ENST00000597136 HOXB1P14653 301 aaPredicted RBP13.03□□□□□ -0.32
TRIM28-207ENST00000597136 ALOX5APP20292 161 aa13.03□□□□□ -0.32
TRIM28-207ENST00000597136 HOXC12P31275 282 aa13.03□□□□□ -0.32
TRIM28-207ENST00000597136 ETV1P50549 477 aa13.03□□□□□ -0.32
TRIM28-207ENST00000597136 ACTC1P68032 377 aa13.03□□□□□ -0.32
TRIM28-207ENST00000597136 ACTA1P68133 377 aa13.03□□□□□ -0.32
TRIM28-207ENST00000597136 SPOCK1Q08629 439 aa13.03□□□□□ -0.32
TRIM28-207ENST00000597136 ZNF773Q6PK81 442 aa13.03□□□□□ -0.32
TRIM28-207ENST00000597136 CORO6Q6QEF8 472 aa13.03□□□□□ -0.32
TRIM28-207ENST00000597136 LHFPL3Q86UP9 236 aa13.03□□□□□ -0.32
TRIM28-207ENST00000597136 MDP1Q86V88 176 aa13.03□□□□□ -0.32
TRIM28-207ENST00000597136 LINC00346Q8IVM7 164 aa13.03□□□□□ -0.32
TRIM28-207ENST00000597136 RFLNBQ8N5W9 214 aa13.03□□□□□ -0.32
TRIM28-207ENST00000597136 ZNF454Q8N9F8 522 aa13.03□□□□□ -0.32
TRIM28-207ENST00000597136 LILRB1Q8NHL6 650 aaPredicted RBP13.03□□□□□ -0.32
TRIM28-207ENST00000597136 ZNF649Q9BS31 505 aa13.03□□□□□ -0.32
TRIM28-207ENST00000597136 CDCA4Q9BXL8 241 aa13.03□□□□□ -0.32
TRIM28-207ENST00000597136 CCDC90BQ9GZT6 254 aa13.03□□□□□ -0.32
TRIM28-207ENST00000597136 PLEKHF2Q9H8W4 249 aa13.03□□□□□ -0.32
TRIM28-207ENST00000597136 INPP5EQ9NRR6 644 aa13.03□□□□□ -0.32
TRIM28-207ENST00000597136 ERVK13-1Q9NX77 482 aa13.03□□□□□ -0.32
TRIM28-207ENST00000597136 ASH2LQ9UBL3 628 aa13.03□□□□□ -0.32
TRIM28-207ENST00000597136 LAMP5Q9UJQ1 280 aa13.03□□□□□ -0.32
TRIM28-207ENST00000597136 EXOSC1Q9Y3B2 195 aaKnown RBP13.03□□□□□ -0.32
TRIM28-207ENST00000597136 TMEM14AQ9Y6G1 99 aa13.03□□□□□ -0.32
TRIM28-207ENST00000597136 PRRC2AP48634 2157 aaKnown RBP13.02□□□□□ -0.32
TRIM28-207ENST00000597136 IGHV1-18A0A0C4DH31 117 aa13.02□□□□□ -0.33
TRIM28-207ENST00000597136 WNT11O96014 354 aa13.02□□□□□ -0.33
TRIM28-207ENST00000597136 LIMS3P0CW19 117 aa13.02□□□□□ -0.33
TRIM28-207ENST00000597136 LIMS4P0CW20 117 aa13.02□□□□□ -0.33
TRIM28-207ENST00000597136 CD79AP11912 226 aa13.02□□□□□ -0.33
TRIM28-207ENST00000597136 MYL12AP19105 171 aa13.02□□□□□ -0.33
TRIM28-207ENST00000597136 AQP6Q13520 282 aa13.02□□□□□ -0.33
TRIM28-207ENST00000597136 RNLSQ5VYX0 342 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms