RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 CMKLR1Q99788 373 aa9□□□□□ -0.97
VPS53-220ENST00000576149 ATG5Q9H1Y0 275 aa9□□□□□ -0.97
VPS53-220ENST00000576149 SLC26A1Q9H2B4 701 aa9□□□□□ -0.97
VPS53-220ENST00000576149 HEXA-AS1Q9H8Q6 139 aa9□□□□□ -0.97
VPS53-220ENST00000576149 APMAPQ9HDC9 416 aa9□□□□□ -0.97
VPS53-220ENST00000576149 SDHAF3Q9NRP4 125 aa9□□□□□ -0.97
VPS53-220ENST00000576149 SERINC1Q9NRX5 453 aa9□□□□□ -0.97
VPS53-220ENST00000576149 KLHL13Q9P2N7 655 aa9□□□□□ -0.97
VPS53-220ENST00000576149 B3GAT1Q9P2W7 334 aa9□□□□□ -0.97
VPS53-220ENST00000576149 WIF1Q9Y5W5 379 aa9□□□□□ -0.97
VPS53-220ENST00000576149 B3GALT1Q9Y5Z6 326 aa9□□□□□ -0.97
VPS53-220ENST00000576149 CACNA1CQ13936 2221 aa9□□□□□ -0.97
VPS53-220ENST00000576149 TMEM269A0A1B0GVZ9 245 aa9□□□□□ -0.97
VPS53-220ENST00000576149 LOC107986453A0A1B0GWG9 222 aa9□□□□□ -0.97
VPS53-220ENST00000576149 FAM221AA4D161 298 aa9□□□□□ -0.97
VPS53-220ENST00000576149 MEGF11A6BM72 1044 aa9□□□□□ -0.97
VPS53-220ENST00000576149 CREBL2O60519 120 aaPredicted RBP9□□□□□ -0.97
VPS53-220ENST00000576149 OR2J2O76002 312 aa9□□□□□ -0.97
VPS53-220ENST00000576149 BIDP55957 195 aa9□□□□□ -0.97
VPS53-220ENST00000576149 GUCA2AQ02747 115 aa9□□□□□ -0.97
VPS53-220ENST00000576149 MYBPHQ13203 477 aa9□□□□□ -0.97
VPS53-220ENST00000576149 RBMS2Q15434 407 aaKnown RBP9□□□□□ -0.97
VPS53-220ENST00000576149 GLYATL3Q5SZD4 288 aa9□□□□□ -0.97
VPS53-220ENST00000576149 TMEM244Q5VVB8 128 aa9□□□□□ -0.97
VPS53-220ENST00000576149 TEX261Q6UWH6 196 aa9□□□□□ -0.97
VPS53-220ENST00000576149 ZNF600Q6ZNG1 722 aa9□□□□□ -0.97
VPS53-220ENST00000576149 OR51A2Q8NGJ7 313 aa9□□□□□ -0.97
VPS53-220ENST00000576149 OR6M1Q8NGM8 313 aa9□□□□□ -0.97
VPS53-220ENST00000576149 OR13C3Q8NGS6 347 aa9□□□□□ -0.97
VPS53-220ENST00000576149 RADILQ96JH8 1075 aa9□□□□□ -0.97
VPS53-220ENST00000576149 SORCS2Q96PQ0 1159 aa9□□□□□ -0.97
VPS53-220ENST00000576149 NKX3-1Q99801 234 aaPredicted RBP9□□□□□ -0.97
VPS53-220ENST00000576149 EMC6Q9BV81 110 aa9□□□□□ -0.97
VPS53-220ENST00000576149 MRPL13Q9BYD1 178 aaKnown RBP9□□□□□ -0.97
VPS53-220ENST00000576149 METTL7AQ9H8H3 244 aa9□□□□□ -0.97
VPS53-220ENST00000576149 GPN1Q9HCN4 374 aaPredicted RBP9□□□□□ -0.97
VPS53-220ENST00000576149 C19orf25Q9UFG5 118 aaPredicted RBP9□□□□□ -0.97
VPS53-220ENST00000576149 MRPS18BQ9Y676 258 aaKnown RBP9□□□□□ -0.97
VPS53-220ENST00000576149 U3KQ87 197 aa9□□□□□ -0.97
VPS53-220ENST00000576149 LOC390937A0A1W2PQ73 354 aa8.99□□□□□ -0.97
VPS53-220ENST00000576149 PYCARD-AS1I3L0S3 204 aa8.99□□□□□ -0.97
VPS53-220ENST00000576149 H2BFMP0C1H6 154 aa8.99□□□□□ -0.97
VPS53-220ENST00000576149 DNASE1L1P49184 302 aa8.99□□□□□ -0.97
VPS53-220ENST00000576149 MMP16P51512 607 aa8.99□□□□□ -0.97
VPS53-220ENST00000576149 SSBP1Q04837 148 aaKnown RBP8.99□□□□□ -0.97
VPS53-220ENST00000576149 HLA-BQ31612 363 aa8.99□□□□□ -0.97
VPS53-220ENST00000576149 MRPL14Q6P1L8 145 aaKnown RBP8.99□□□□□ -0.97
VPS53-220ENST00000576149 MEIOBQ8N635 442 aa8.99□□□□□ -0.97
VPS53-220ENST00000576149 SLC22A8Q8TCC7 542 aa8.99□□□□□ -0.97
VPS53-220ENST00000576149 GPX8Q8TED1 209 aa8.99□□□□□ -0.97
VPS53-220ENST00000576149 C11orf40Q8WZ69 217 aa8.99□□□□□ -0.97
VPS53-220ENST00000576149 RBP7Q96R05 134 aa8.99□□□□□ -0.97
VPS53-220ENST00000576149 FSCN3Q9NQT6 498 aa8.99□□□□□ -0.97
VPS53-220ENST00000576149 CENPMQ9NSP4 180 aa8.99□□□□□ -0.97
VPS53-220ENST00000576149 CGGBP1Q9UFW8 167 aaPredicted RBP8.99□□□□□ -0.97
VPS53-220ENST00000576149 PISDQ9UG56 409 aa8.99□□□□□ -0.97
VPS53-220ENST00000576149 CYB5R1Q9UHQ9 305 aa8.99□□□□□ -0.97
VPS53-220ENST00000576149 FREM3P0C091 2139 aa8.99□□□□□ -0.97
VPS53-220ENST00000576149 DCDC2BA2VCK2 349 aa8.99□□□□□ -0.97
VPS53-220ENST00000576149 VSTM5A8MXK1 200 aa8.99□□□□□ -0.97
VPS53-220ENST00000576149 MEN1O00255 615 aa8.99□□□□□ -0.97
VPS53-220ENST00000576149 LDLRAD4O15165 306 aa8.99□□□□□ -0.97
VPS53-220ENST00000576149 DOK2O60496 412 aa8.99□□□□□ -0.97
VPS53-220ENST00000576149 DKK1O94907 266 aa8.99□□□□□ -0.97
VPS53-220ENST00000576149 UBCP0CG48 685 aaKnown RBP8.99□□□□□ -0.97
VPS53-220ENST00000576149 AKAIN1P0CW23 69 aa8.99□□□□□ -0.97
VPS53-220ENST00000576149 GTF2F2P13984 249 aa8.99□□□□□ -0.97
VPS53-220ENST00000576149 GABRA1P14867 456 aa8.99□□□□□ -0.97
VPS53-220ENST00000576149 GPR85P60893 370 aa8.99□□□□□ -0.97
VPS53-220ENST00000576149 C19orf57Q0VDD7 668 aa8.99□□□□□ -0.97
VPS53-220ENST00000576149 INPP5JQ15735 1006 aaPredicted RBP8.99□□□□□ -0.97
VPS53-220ENST00000576149 CSRP2Q16527 193 aa8.99□□□□□ -0.97
VPS53-220ENST00000576149 PMS2CLQ68D20 193 aa8.99□□□□□ -0.97
VPS53-220ENST00000576149 SLC36A1Q7Z2H8 476 aa8.99□□□□□ -0.97
VPS53-220ENST00000576149 LYPD6Q86Y78 171 aa8.99□□□□□ -0.97
VPS53-220ENST00000576149 HIST2H2ABQ8IUE6 130 aaPredicted RBP8.99□□□□□ -0.97
VPS53-220ENST00000576149 CLEC1AQ8NC01 280 aa8.99□□□□□ -0.97
VPS53-220ENST00000576149 ADPRHL1Q8NDY3 354 aa8.99□□□□□ -0.97
VPS53-220ENST00000576149 ZNF680Q8NEM1 530 aa8.99□□□□□ -0.97
VPS53-220ENST00000576149 OR2M3Q8NG83 312 aa8.99□□□□□ -0.97
VPS53-220ENST00000576149 OR4D10Q8NGI6 311 aa8.99□□□□□ -0.97
VPS53-220ENST00000576149 PRR7Q8TB68 274 aa8.99□□□□□ -0.97
VPS53-220ENST00000576149 AKIRIN1Q9H9L7 192 aaPredicted RBP8.99□□□□□ -0.97
VPS53-220ENST00000576149 FAM206AQ9NX38 181 aa8.99□□□□□ -0.97
VPS53-220ENST00000576149 OCIAD1Q9NX40 245 aa8.99□□□□□ -0.97
VPS53-220ENST00000576149 B3GNT2Q9NY97 397 aa8.99□□□□□ -0.97
VPS53-220ENST00000576149 PIPOXQ9P0Z9 390 aa8.99□□□□□ -0.97
VPS53-220ENST00000576149 MGAT4CQ9UBM8 478 aa8.99□□□□□ -0.97
VPS53-220ENST00000576149 EIF3KQ9UBQ5 218 aaKnown RBP8.99□□□□□ -0.97
VPS53-220ENST00000576149 PILRBQ9UKJ0 227 aa8.99□□□□□ -0.97
VPS53-220ENST00000576149 CACNA1EQ15878 2313 aa8.98□□□□□ -0.97
VPS53-220ENST00000576149 LOC101059948A0A1B0GTJ6 334 aa8.98□□□□□ -0.97
VPS53-220ENST00000576149 SULT1C2O00338 296 aa8.98□□□□□ -0.97
VPS53-220ENST00000576149 P2RY10O00398 339 aa8.98□□□□□ -0.97
VPS53-220ENST00000576149 LMX1BO60663 402 aa8.98□□□□□ -0.97
VPS53-220ENST00000576149 CYC1P08574 325 aa8.98□□□□□ -0.97
VPS53-220ENST00000576149 VSIG10L2P0DP72 767 aa8.98□□□□□ -0.97
VPS53-220ENST00000576149 ZNF81P51508 661 aa8.98□□□□□ -0.97
VPS53-220ENST00000576149 P2RY4P51582 365 aa8.98□□□□□ -0.97
VPS53-220ENST00000576149 SPOCK1Q08629 439 aa8.98□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms