RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 SLC30A7Q8NEW0 376 aa17.84■□□□□ 0.45
VPS53-210ENST00000571456 FGFBP3Q8TAT2 258 aa17.84■□□□□ 0.45
VPS53-210ENST00000571456 FAM81AQ8TBF8 368 aa17.84■□□□□ 0.45
VPS53-210ENST00000571456 MBOAT4Q96T53 435 aa17.84■□□□□ 0.45
VPS53-210ENST00000571456 APOL4Q9BPW4 351 aa17.84■□□□□ 0.45
VPS53-210ENST00000571456 NOX3Q9HBY0 568 aa17.84■□□□□ 0.45
VPS53-210ENST00000571456 FAM118AQ9NWS6 357 aa17.84■□□□□ 0.45
VPS53-210ENST00000571456 MRPL22Q9NWU5 206 aaKnown RBP17.84■□□□□ 0.45
VPS53-210ENST00000571456 HAO2Q9NYQ3 351 aa17.84■□□□□ 0.45
VPS53-210ENST00000571456 RRP15Q9Y3B9 282 aaKnown RBP17.84■□□□□ 0.45
VPS53-210ENST00000571456 COMMD3-BMI1R4GMX3 469 aa17.84■□□□□ 0.45
VPS53-210ENST00000571456 SCG5P05408 212 aa17.83■□□□□ 0.44
VPS53-210ENST00000571456 GYPBP06028 91 aa17.83■□□□□ 0.44
VPS53-210ENST00000571456 PATE4P0C8F1 98 aa17.83■□□□□ 0.44
VPS53-210ENST00000571456 RPS7P62081 194 aaKnown RBP17.83■□□□□ 0.44
VPS53-210ENST00000571456 SNRPGP62308 76 aaKnown RBP17.83■□□□□ 0.44
VPS53-210ENST00000571456 GALK2Q01415 458 aa17.83■□□□□ 0.44
VPS53-210ENST00000571456 KLHL12Q53G59 568 aa17.83■□□□□ 0.44
VPS53-210ENST00000571456 AADACL4Q5VUY2 407 aa17.83■□□□□ 0.44
VPS53-210ENST00000571456 SHEQ5VZ18 495 aa17.83■□□□□ 0.44
VPS53-210ENST00000571456 ARL9Q6T311 187 aa17.83■□□□□ 0.44
VPS53-210ENST00000571456 C20orf204Q6ZNR8 217 aa17.83■□□□□ 0.44
VPS53-210ENST00000571456 PIAS4Q8N2W9 510 aaPredicted RBP17.83■□□□□ 0.44
VPS53-210ENST00000571456 ZNF454Q8N9F8 522 aa17.83■□□□□ 0.44
VPS53-210ENST00000571456 NUP37Q8NFH4 326 aa17.83■□□□□ 0.44
VPS53-210ENST00000571456 HTRA1Q92743 480 aa17.83■□□□□ 0.44
VPS53-210ENST00000571456 COX4I2Q96KJ9 171 aa17.83■□□□□ 0.44
VPS53-210ENST00000571456 DCLRE1CQ96SD1 692 aaKnown RBP17.83■□□□□ 0.44
VPS53-210ENST00000571456 INTS14Q96SY0 518 aa17.83■□□□□ 0.44
VPS53-210ENST00000571456 HCAR1Q9BXC0 346 aa17.83■□□□□ 0.44
VPS53-210ENST00000571456 FAIMQ9NVQ4 179 aa17.83■□□□□ 0.44
VPS53-210ENST00000571456 PLEK2Q9NYT0 353 aa17.83■□□□□ 0.44
VPS53-210ENST00000571456 NKX1-2Q9UD57 310 aaPredicted RBP17.83■□□□□ 0.44
VPS53-210ENST00000571456 LHFPL6Q9Y693 200 aa17.83■□□□□ 0.44
VPS53-210ENST00000571456 IGHV2OR16-5A0A0B4J2B6 119 aa17.82■□□□□ 0.44
VPS53-210ENST00000571456 H0YAE9 185 aa17.82■□□□□ 0.44
VPS53-210ENST00000571456 J3QW42 95 aa17.82■□□□□ 0.44
VPS53-210ENST00000571456 MPZL1O95297 269 aa17.82■□□□□ 0.44
VPS53-210ENST00000571456 CLUP10909 449 aa17.82■□□□□ 0.44
VPS53-210ENST00000571456 ZNF35P13682 527 aa17.82■□□□□ 0.44
VPS53-210ENST00000571456 TUBG1P23258 451 aa17.82■□□□□ 0.44
VPS53-210ENST00000571456 STOMP27105 288 aa17.82■□□□□ 0.44
VPS53-210ENST00000571456 GDI2P50395 445 aaKnown RBP17.82■□□□□ 0.44
VPS53-210ENST00000571456 RPS23P62266 143 aaKnown RBP17.82■□□□□ 0.44
VPS53-210ENST00000571456 NKX6-1P78426 367 aaPredicted RBP17.82■□□□□ 0.44
VPS53-210ENST00000571456 POU4F2Q12837 409 aa17.82■□□□□ 0.44
VPS53-210ENST00000571456 GGTLC2Q14390 218 aa17.82■□□□□ 0.44
VPS53-210ENST00000571456 ZNF672Q499Z4 452 aaPredicted RBP17.82■□□□□ 0.44
VPS53-210ENST00000571456 SLC18B1Q6NT16 456 aa17.82■□□□□ 0.44
VPS53-210ENST00000571456 ZNF544Q6NX49 715 aa17.82■□□□□ 0.44
VPS53-210ENST00000571456 MEPCEQ7L2J0 689 aaKnown RBP17.82■□□□□ 0.44
VPS53-210ENST00000571456 ZNF584Q8IVC4 421 aa17.82■□□□□ 0.44
VPS53-210ENST00000571456 DHRSXQ8N5I4 330 aa17.82■□□□□ 0.44
VPS53-210ENST00000571456 SETD9Q8NE22 299 aa17.82■□□□□ 0.44
VPS53-210ENST00000571456 OR51L1Q8NGJ5 315 aa17.82■□□□□ 0.44
VPS53-210ENST00000571456 FBXW5Q969U6 566 aa17.82■□□□□ 0.44
VPS53-210ENST00000571456 Q96MT0 163 aa17.82■□□□□ 0.44
VPS53-210ENST00000571456 FOXN4Q96NZ1 517 aa17.82■□□□□ 0.44
VPS53-210ENST00000571456 HS3ST6Q96QI5 342 aa17.82■□□□□ 0.44
VPS53-210ENST00000571456 MNTQ99583 582 aa17.82■□□□□ 0.44
VPS53-210ENST00000571456 TEAD3Q99594 435 aa17.82■□□□□ 0.44
VPS53-210ENST00000571456 COQ7Q99807 217 aa17.82■□□□□ 0.44
VPS53-210ENST00000571456 WNT5BQ9H1J7 359 aa17.82■□□□□ 0.44
VPS53-210ENST00000571456 MED20Q9H944 212 aa17.82■□□□□ 0.44
VPS53-210ENST00000571456 CDH20Q9HBT6 801 aa17.82■□□□□ 0.44
VPS53-210ENST00000571456 TUBG2Q9NRH3 451 aa17.82■□□□□ 0.44
VPS53-210ENST00000571456 WARS2Q9UGM6 360 aaKnown RBP17.82■□□□□ 0.44
VPS53-210ENST00000571456 POU2F3Q9UKI9 436 aa17.82■□□□□ 0.44
VPS53-210ENST00000571456 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP17.82■□□□□ 0.44
VPS53-210ENST00000571456 CHD3Q12873 2000 aaKnown RBP17.81■□□□□ 0.44
VPS53-210ENST00000571456 OR6C6A6NF89 314 aa17.81■□□□□ 0.44
VPS53-210ENST00000571456 SHISA9B4DS77 424 aa17.81■□□□□ 0.44
VPS53-210ENST00000571456 INAFM1C9JVW0 142 aa17.81■□□□□ 0.44
VPS53-210ENST00000571456 HS3ST1O14792 307 aa17.81■□□□□ 0.44
VPS53-210ENST00000571456 DOK2O60496 412 aa17.81■□□□□ 0.44
VPS53-210ENST00000571456 ICMTO60725 284 aa17.81■□□□□ 0.44
VPS53-210ENST00000571456 ATP6V1G2O95670 118 aa17.81■□□□□ 0.44
VPS53-210ENST00000571456 NUDT6P53370 316 aa17.81■□□□□ 0.44
VPS53-210ENST00000571456 APOFQ13790 326 aa17.81■□□□□ 0.44
VPS53-210ENST00000571456 OCLNQ16625 522 aa17.81■□□□□ 0.44
VPS53-210ENST00000571456 ELFN2Q5R3F8 820 aa17.81■□□□□ 0.44
VPS53-210ENST00000571456 ZNF611Q8N823 705 aa17.81■□□□□ 0.44
VPS53-210ENST00000571456 IL4I1Q96RQ9 567 aa17.81■□□□□ 0.44
VPS53-210ENST00000571456 PLEKHF2Q9H8W4 249 aa17.81■□□□□ 0.44
VPS53-210ENST00000571456 GDF2Q9UK05 429 aaPredicted RBP17.81■□□□□ 0.44
VPS53-210ENST00000571456 FBXO9Q9UK97 447 aaPredicted RBP17.81■□□□□ 0.44
VPS53-210ENST00000571456 TMEM14AQ9Y6G1 99 aa17.81■□□□□ 0.44
VPS53-210ENST00000571456 HSPE1-MOB4S4R3N1 261 aa17.81■□□□□ 0.44
VPS53-210ENST00000571456 RAI1Q7Z5J4 1906 aaPredicted RBP17.8■□□□□ 0.44
VPS53-210ENST00000571456 ZNF593O00488 134 aaPredicted RBP17.8■□□□□ 0.44
VPS53-210ENST00000571456 DLGAP1O14490 977 aa17.8■□□□□ 0.44
VPS53-210ENST00000571456 CELA3BP08861 270 aa17.8■□□□□ 0.44
VPS53-210ENST00000571456 RAD52P43351 418 aa17.8■□□□□ 0.44
VPS53-210ENST00000571456 CDH11P55287 796 aa17.8■□□□□ 0.44
VPS53-210ENST00000571456 MEP1BQ16820 701 aa17.8■□□□□ 0.44
VPS53-210ENST00000571456 VASH1Q7L8A9 365 aaPredicted RBP17.8■□□□□ 0.44
VPS53-210ENST00000571456 ERI1Q8IV48 349 aaKnown RBP17.8■□□□□ 0.44
VPS53-210ENST00000571456 TIGD4Q8IY51 512 aa17.8■□□□□ 0.44
VPS53-210ENST00000571456 ZNF511Q8NB15 262 aa17.8■□□□□ 0.44
VPS53-210ENST00000571456 CPEB3Q8NE35 698 aaKnown RBP17.8■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms