RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 SLC6A7Q99884 636 aa6.71□□□□□ -1.33
LIMA1-213ENST00000552720 B3GNT4Q9C0J1 378 aa6.71□□□□□ -1.33
LIMA1-213ENST00000552720 C12orf10Q9HB07 376 aa6.71□□□□□ -1.33
LIMA1-213ENST00000552720 MED29Q9NX70 200 aa6.71□□□□□ -1.33
LIMA1-213ENST00000552720 VSX1Q9NZR4 365 aaPredicted RBP6.71□□□□□ -1.33
LIMA1-213ENST00000552720 MKL2Q9ULH7 1088 aa6.71□□□□□ -1.33
LIMA1-213ENST00000552720 HRH3Q9Y5N1 445 aa6.71□□□□□ -1.33
LIMA1-213ENST00000552720 ADAMTS9Q9P2N4 1935 aa6.71□□□□□ -1.34
LIMA1-213ENST00000552720 TUBAL3A6NHL2 446 aa6.71□□□□□ -1.34
LIMA1-213ENST00000552720 TRIM77I1YAP6 450 aa6.71□□□□□ -1.34
LIMA1-213ENST00000552720 CD2P06729 351 aa6.71□□□□□ -1.34
LIMA1-213ENST00000552720 FOLR1P15328 257 aa6.71□□□□□ -1.34
LIMA1-213ENST00000552720 NME1P15531 152 aaKnown RBP6.71□□□□□ -1.34
LIMA1-213ENST00000552720 DNASE1L1P49184 302 aa6.71□□□□□ -1.34
LIMA1-213ENST00000552720 ARRB1P49407 418 aaPredicted RBP6.71□□□□□ -1.34
LIMA1-213ENST00000552720 POLR2HP52434 150 aaKnown RBP6.71□□□□□ -1.34
LIMA1-213ENST00000552720 TAS2R19P59542 299 aa6.71□□□□□ -1.34
LIMA1-213ENST00000552720 DHRS2Q13268 280 aa6.71□□□□□ -1.34
LIMA1-213ENST00000552720 ATXN7L3Q14CW9 347 aaPredicted RBP6.71□□□□□ -1.34
LIMA1-213ENST00000552720 ZMYND11Q15326 602 aa6.71□□□□□ -1.34
LIMA1-213ENST00000552720 ELAVL1Q15717 326 aaKnown RBP6.71□□□□□ -1.34
LIMA1-213ENST00000552720 GLT8D1Q68CQ7 371 aa6.71□□□□□ -1.34
LIMA1-213ENST00000552720 KCTD18Q6PI47 426 aaPredicted RBP6.71□□□□□ -1.34
LIMA1-213ENST00000552720 ATRAIDQ6UW56 229 aa6.71□□□□□ -1.34
LIMA1-213ENST00000552720 BPIFB2Q8N4F0 458 aa6.71□□□□□ -1.34
LIMA1-213ENST00000552720 C12orf45Q8N5I9 185 aaPredicted RBP6.71□□□□□ -1.34
LIMA1-213ENST00000552720 ASB17Q8WXJ9 295 aa6.71□□□□□ -1.34
LIMA1-213ENST00000552720 MRGPRFQ96AM1 343 aa6.71□□□□□ -1.34
LIMA1-213ENST00000552720 MICU1Q9BPX6 476 aa6.71□□□□□ -1.34
LIMA1-213ENST00000552720 EMC6Q9BV81 110 aa6.71□□□□□ -1.34
LIMA1-213ENST00000552720 FOXQ1Q9C009 403 aa6.71□□□□□ -1.34
LIMA1-213ENST00000552720 C1orf198Q9H425 327 aa6.71□□□□□ -1.34
LIMA1-213ENST00000552720 C8orf33Q9H7E9 229 aaPredicted RBP6.71□□□□□ -1.34
LIMA1-213ENST00000552720 G6PC2Q9NQR9 355 aa6.71□□□□□ -1.34
LIMA1-213ENST00000552720 CENPMQ9NSP4 180 aa6.71□□□□□ -1.34
LIMA1-213ENST00000552720 MED11Q9P086 117 aa6.71□□□□□ -1.34
LIMA1-213ENST00000552720 MRTO4Q9UKD2 239 aaKnown RBP6.71□□□□□ -1.34
LIMA1-213ENST00000552720 VDAC3Q9Y277 283 aa6.71□□□□□ -1.34
LIMA1-213ENST00000552720 FRYQ5TBA9 3013 aa6.7□□□□□ -1.34
LIMA1-213ENST00000552720 IGHV1OR15-9A0A0B4J2B8 117 aa6.7□□□□□ -1.34
LIMA1-213ENST00000552720 TMEM269A0A1B0GVZ9 245 aa6.7□□□□□ -1.34
LIMA1-213ENST00000552720 LILRA5A6NI73 299 aa6.7□□□□□ -1.34
LIMA1-213ENST00000552720 HSPB2A8KAH6 182 aa6.7□□□□□ -1.34
LIMA1-213ENST00000552720 A8MVM7 634 aa6.7□□□□□ -1.34
LIMA1-213ENST00000552720 A8MXK9 166 aa6.7□□□□□ -1.34
LIMA1-213ENST00000552720 MS4A18H0YCH9 400 aa6.7□□□□□ -1.34
LIMA1-213ENST00000552720 H3BUI4 141 aa6.7□□□□□ -1.34
LIMA1-213ENST00000552720 FADS1O60427 444 aa6.7□□□□□ -1.34
LIMA1-213ENST00000552720 MT-ATP6P00846 226 aa6.7□□□□□ -1.34
LIMA1-213ENST00000552720 IGLV3-19P01714 112 aa6.7□□□□□ -1.34
LIMA1-213ENST00000552720 OPN1LWP04000 364 aa6.7□□□□□ -1.34
LIMA1-213ENST00000552720 ANOS1P23352 680 aa6.7□□□□□ -1.34
LIMA1-213ENST00000552720 PTGS2P35354 604 aa6.7□□□□□ -1.34
LIMA1-213ENST00000552720 ARHGDIBP52566 201 aa6.7□□□□□ -1.34
LIMA1-213ENST00000552720 ACTBP60709 375 aa6.7□□□□□ -1.34
LIMA1-213ENST00000552720 ACTG1P63261 375 aa6.7□□□□□ -1.34
LIMA1-213ENST00000552720 GLO1Q04760 184 aa6.7□□□□□ -1.34
LIMA1-213ENST00000552720 UBXN2BQ14CS0 331 aa6.7□□□□□ -1.34
LIMA1-213ENST00000552720 OR7A5Q15622 319 aa6.7□□□□□ -1.34
LIMA1-213ENST00000552720 HSPB2Q16082 182 aa6.7□□□□□ -1.34
LIMA1-213ENST00000552720 MS4A18Q3C1V0 323 aa6.7□□□□□ -1.34
LIMA1-213ENST00000552720 DMRTC1Q5HYR2 192 aa6.7□□□□□ -1.34
LIMA1-213ENST00000552720 NUP54Q7Z3B4 507 aa6.7□□□□□ -1.34
LIMA1-213ENST00000552720 ADGRE4PQ86SQ3 457 aa6.7□□□□□ -1.34
LIMA1-213ENST00000552720 ZNF546Q86UE3 836 aa6.7□□□□□ -1.34
LIMA1-213ENST00000552720 CDH26Q8IXH8 852 aa6.7□□□□□ -1.34
LIMA1-213ENST00000552720 BOLLQ8N9W6 283 aaKnown RBP6.7□□□□□ -1.34
LIMA1-213ENST00000552720 TMEM229BQ8NBD8 167 aa6.7□□□□□ -1.34
LIMA1-213ENST00000552720 BVESQ8NE79 360 aa6.7□□□□□ -1.34
LIMA1-213ENST00000552720 SLC26A10Q8NG04 563 aa6.7□□□□□ -1.34
LIMA1-213ENST00000552720 OR5M9Q8NGP3 310 aa6.7□□□□□ -1.34
LIMA1-213ENST00000552720 ST7LQ8TDW4 575 aa6.7□□□□□ -1.34
LIMA1-213ENST00000552720 NUDCD2Q8WVJ2 157 aa6.7□□□□□ -1.34
LIMA1-213ENST00000552720 ST8SIA4Q92187 359 aa6.7□□□□□ -1.34
LIMA1-213ENST00000552720 ZNF75AQ96N20 296 aa6.7□□□□□ -1.34
LIMA1-213ENST00000552720 NUDT22Q9BRQ3 303 aa6.7□□□□□ -1.34
LIMA1-213ENST00000552720 VN1R1Q9GZP7 353 aa6.7□□□□□ -1.34
LIMA1-213ENST00000552720 SHARPINQ9H0F6 387 aa6.7□□□□□ -1.34
LIMA1-213ENST00000552720 PPA2Q9H2U2 334 aa6.7□□□□□ -1.34
LIMA1-213ENST00000552720 PTGES2Q9H7Z7 377 aa6.7□□□□□ -1.34
LIMA1-213ENST00000552720 CKLFQ9UBR5 152 aa6.7□□□□□ -1.34
LIMA1-213ENST00000552720 CTSFQ9UBX1 484 aa6.7□□□□□ -1.34
LIMA1-213ENST00000552720 PFDN2Q9UHV9 154 aa6.7□□□□□ -1.34
LIMA1-213ENST00000552720 OR52A1Q9UKL2 312 aa6.7□□□□□ -1.34
LIMA1-213ENST00000552720 HHLA2Q9UM44 414 aa6.7□□□□□ -1.34
LIMA1-213ENST00000552720 VSIG4Q9Y279 399 aa6.7□□□□□ -1.34
LIMA1-213ENST00000552720 SLC5A6Q9Y289 635 aa6.7□□□□□ -1.34
LIMA1-213ENST00000552720 RHBDD3Q9Y3P4 386 aa6.7□□□□□ -1.34
LIMA1-213ENST00000552720 MMACHCQ9Y4U1 282 aa6.7□□□□□ -1.34
LIMA1-213ENST00000552720 RFPL4AA6NLU0 287 aa6.7□□□□□ -1.34
LIMA1-213ENST00000552720 ZNF736B4DX44 427 aaPredicted RBP6.7□□□□□ -1.34
LIMA1-213ENST00000552720 FTCDNL1E5RQL4 147 aa6.7□□□□□ -1.34
LIMA1-213ENST00000552720 RFPL4AL1F8VTS6 287 aa6.7□□□□□ -1.34
LIMA1-213ENST00000552720 LDLRAD4O15165 306 aa6.7□□□□□ -1.34
LIMA1-213ENST00000552720 EIF4E2O60573 245 aaKnown RBP6.7□□□□□ -1.34
LIMA1-213ENST00000552720 TPPPO94811 219 aa6.7□□□□□ -1.34
LIMA1-213ENST00000552720 AHSA1O95433 338 aa6.7□□□□□ -1.34
LIMA1-213ENST00000552720 SLC34A2O95436 690 aa6.7□□□□□ -1.34
LIMA1-213ENST00000552720 PMS2P2O95744 297 aa6.7□□□□□ -1.34
LIMA1-213ENST00000552720 CYB5AP00167 134 aa6.7□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms