RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 SLITRK2Q9H156 845 aa3.08□□□□□ -1.92
LIMA1-208ENST00000551691 SRMSQ9H3Y6 488 aa3.08□□□□□ -1.92
LIMA1-208ENST00000551691 CUTCQ9NTM9 273 aa3.08□□□□□ -1.92
LIMA1-208ENST00000551691 KLHL28Q9NXS3 571 aa3.08□□□□□ -1.92
LIMA1-208ENST00000551691 EURLQ9NYK6 297 aa3.08□□□□□ -1.92
LIMA1-208ENST00000551691 MBD2Q9UBB5 411 aa3.08□□□□□ -1.92
LIMA1-208ENST00000551691 ONECUT1Q9UBC0 465 aa3.08□□□□□ -1.92
LIMA1-208ENST00000551691 IKZF2Q9UKS7 526 aa3.08□□□□□ -1.92
LIMA1-208ENST00000551691 PSME2Q9UL46 239 aa3.08□□□□□ -1.92
LIMA1-208ENST00000551691 COPS3Q9UNS2 423 aa3.08□□□□□ -1.92
LIMA1-208ENST00000551691 TRAF3IP3Q9Y228 551 aa3.08□□□□□ -1.92
LIMA1-208ENST00000551691 EXOGQ9Y2C4 368 aaKnown RBP3.08□□□□□ -1.92
LIMA1-208ENST00000551691 PPIL1Q9Y3C6 166 aa3.08□□□□□ -1.92
LIMA1-208ENST00000551691 RNF115Q9Y4L5 304 aa3.08□□□□□ -1.92
LIMA1-208ENST00000551691 OARD1Q9Y530 152 aa3.08□□□□□ -1.92
LIMA1-208ENST00000551691 A0A096LNT2 108 aa3.07□□□□□ -1.92
LIMA1-208ENST00000551691 A0A0G2JMM0 328 aa3.07□□□□□ -1.92
LIMA1-208ENST00000551691 A0A0J9YYE9 177 aa3.07□□□□□ -1.92
LIMA1-208ENST00000551691 PVALEFA0A1B0GWK0 134 aa3.07□□□□□ -1.92
LIMA1-208ENST00000551691 A0A1B0GX78 115 aa3.07□□□□□ -1.92
LIMA1-208ENST00000551691 A0A1W2PPB8 328 aa3.07□□□□□ -1.92
LIMA1-208ENST00000551691 A0A1W2PRS3 328 aa3.07□□□□□ -1.92
LIMA1-208ENST00000551691 MEIOCA2RUB1 952 aa3.07□□□□□ -1.92
LIMA1-208ENST00000551691 LRP5LA4QPB2 252 aa3.07□□□□□ -1.92
LIMA1-208ENST00000551691 NCF1BA6NI72 391 aaPredicted RBP3.07□□□□□ -1.92
LIMA1-208ENST00000551691 OR2AG2A6NM03 316 aa3.07□□□□□ -1.92
LIMA1-208ENST00000551691 NCF1CA8MVU1 366 aaPredicted RBP3.07□□□□□ -1.92
LIMA1-208ENST00000551691 KIR3DP1A8MWS1 328 aa3.07□□□□□ -1.92
LIMA1-208ENST00000551691 L7N2F9 121 aa3.07□□□□□ -1.92
LIMA1-208ENST00000551691 PDLIM1O00151 329 aa3.07□□□□□ -1.92
LIMA1-208ENST00000551691 UBFD1O14562 309 aaKnown RBP3.07□□□□□ -1.92
LIMA1-208ENST00000551691 ZNF264O43296 627 aa3.07□□□□□ -1.92
LIMA1-208ENST00000551691 UGT1A9O60656 530 aa3.07□□□□□ -1.92
LIMA1-208ENST00000551691 SHOX2O60902 331 aaPredicted RBP3.07□□□□□ -1.92
LIMA1-208ENST00000551691 DIRAS1O95057 198 aa3.07□□□□□ -1.92
LIMA1-208ENST00000551691 TRBC1P01850 177 aa3.07□□□□□ -1.92
LIMA1-208ENST00000551691 SNRPCP09234 159 aaKnown RBP3.07□□□□□ -1.92
LIMA1-208ENST00000551691 PIRTP0C851 137 aa3.07□□□□□ -1.92
LIMA1-208ENST00000551691 PNMA6AP0CW24 399 aaPredicted RBP3.07□□□□□ -1.92
LIMA1-208ENST00000551691 CCDC166P0CW27 439 aa3.07□□□□□ -1.92
LIMA1-208ENST00000551691 NCK1P16333 377 aa3.07□□□□□ -1.92
LIMA1-208ENST00000551691 UGT2B7P16662 529 aa3.07□□□□□ -1.92
LIMA1-208ENST00000551691 LOXP28300 417 aaPredicted RBP3.07□□□□□ -1.92
LIMA1-208ENST00000551691 CASQ1P31415 396 aa3.07□□□□□ -1.92
LIMA1-208ENST00000551691 BDKRB1P46663 353 aa3.07□□□□□ -1.92
LIMA1-208ENST00000551691 ZNF136P52737 540 aa3.07□□□□□ -1.92
LIMA1-208ENST00000551691 LINC01547P58512 204 aaPredicted RBP3.07□□□□□ -1.92
LIMA1-208ENST00000551691 AP1S1P61966 158 aa3.07□□□□□ -1.92
LIMA1-208ENST00000551691 ACTG1P63261 375 aa3.07□□□□□ -1.92
LIMA1-208ENST00000551691 OGDHQ02218 1023 aa3.07□□□□□ -1.92
LIMA1-208ENST00000551691 CD226Q15762 336 aa3.07□□□□□ -1.92
LIMA1-208ENST00000551691 PARP15Q460N3 678 aa3.07□□□□□ -1.92
LIMA1-208ENST00000551691 FBXL19-AS1Q494R0 122 aa3.07□□□□□ -1.92
LIMA1-208ENST00000551691 DCST2Q5T1A1 773 aa3.07□□□□□ -1.92
LIMA1-208ENST00000551691 LCE1EQ5T753 118 aa3.07□□□□□ -1.92
LIMA1-208ENST00000551691 OR4F3Q6IEY1 312 aa3.07□□□□□ -1.92
LIMA1-208ENST00000551691 FAM71F2Q6NXP2 309 aa3.07□□□□□ -1.92
LIMA1-208ENST00000551691 RNASEKQ6P5S7 137 aaKnown RBP3.07□□□□□ -1.92
LIMA1-208ENST00000551691 SPESP1Q6UW49 350 aa3.07□□□□□ -1.92
LIMA1-208ENST00000551691 ABHD13Q7L211 337 aa3.07□□□□□ -1.92
LIMA1-208ENST00000551691 LUZP2Q86TE4 346 aa3.07□□□□□ -1.92
LIMA1-208ENST00000551691 MCOLN2Q8IZK6 566 aa3.07□□□□□ -1.92
LIMA1-208ENST00000551691 UMODL1-AS1Q8N2C9 162 aa3.07□□□□□ -1.92
LIMA1-208ENST00000551691 KIF2BQ8N4N8 673 aa3.07□□□□□ -1.92
LIMA1-208ENST00000551691 FAM83FQ8NEG4 500 aaPredicted RBP3.07□□□□□ -1.92
LIMA1-208ENST00000551691 OR1L4Q8NGR5 311 aa3.07□□□□□ -1.92
LIMA1-208ENST00000551691 OR1B1Q8NGR6 318 aa3.07□□□□□ -1.92
LIMA1-208ENST00000551691 JOSD2Q8TAC2 188 aa3.07□□□□□ -1.92
LIMA1-208ENST00000551691 FLVCR1-AS1Q8TAF5 88 aa3.07□□□□□ -1.92
LIMA1-208ENST00000551691 MIPOL1Q8TD10 442 aa3.07□□□□□ -1.92
LIMA1-208ENST00000551691 TRUB1Q8WWH5 349 aaKnown RBP3.07□□□□□ -1.92
LIMA1-208ENST00000551691 RXFP2Q8WXD0 754 aa3.07□□□□□ -1.92
LIMA1-208ENST00000551691 TAF15Q92804 592 aaKnown RBP eCLIP3.07□□□□□ -1.92
LIMA1-208ENST00000551691 C10orf35Q96D05 121 aa3.07□□□□□ -1.92
LIMA1-208ENST00000551691 FBXO17Q96EF6 278 aa3.07□□□□□ -1.92
LIMA1-208ENST00000551691 DNAJA3Q96EY1 480 aa3.07□□□□□ -1.92
LIMA1-208ENST00000551691 PELI1Q96FA3 418 aa3.07□□□□□ -1.92
LIMA1-208ENST00000551691 OR5B2Q96R09 309 aa3.07□□□□□ -1.92
LIMA1-208ENST00000551691 SLC6A7Q99884 636 aa3.07□□□□□ -1.92
LIMA1-208ENST00000551691 DPH7Q9BTV6 452 aa3.07□□□□□ -1.92
LIMA1-208ENST00000551691 KIR3DX1Q9H7L2 352 aa3.07□□□□□ -1.92
LIMA1-208ENST00000551691 UGT1A7Q9HAW7 530 aa3.07□□□□□ -1.92
LIMA1-208ENST00000551691 UGT1A10Q9HAW8 530 aa3.07□□□□□ -1.92
LIMA1-208ENST00000551691 UGT1A8Q9HAW9 530 aa3.07□□□□□ -1.92
LIMA1-208ENST00000551691 EML4Q9HC35 981 aaKnown RBP3.07□□□□□ -1.92
LIMA1-208ENST00000551691 NEK6Q9HC98 313 aa3.07□□□□□ -1.92
LIMA1-208ENST00000551691 IL1RAPQ9NPH3 570 aa3.07□□□□□ -1.92
LIMA1-208ENST00000551691 RPRD1BQ9NQG5 326 aaKnown RBP3.07□□□□□ -1.92
LIMA1-208ENST00000551691 CHRAC1Q9NRG0 131 aa3.07□□□□□ -1.92
LIMA1-208ENST00000551691 PLCXD1Q9NUJ7 323 aa3.07□□□□□ -1.92
LIMA1-208ENST00000551691 SMOXQ9NWM0 555 aa3.07□□□□□ -1.92
LIMA1-208ENST00000551691 NDE1Q9NXR1 346 aa3.07□□□□□ -1.92
LIMA1-208ENST00000551691 PSMC3IPQ9P2W1 217 aaPredicted RBP3.07□□□□□ -1.92
LIMA1-208ENST00000551691 SPRR3Q9UBC9 169 aa3.07□□□□□ -1.92
LIMA1-208ENST00000551691 STAP1Q9ULZ2 295 aa3.07□□□□□ -1.92
LIMA1-208ENST00000551691 GMPPBQ9Y5P6 360 aa3.07□□□□□ -1.92
LIMA1-208ENST00000551691 SNRNP200O75643 2136 aaKnown RBP3.07□□□□□ -1.92
LIMA1-208ENST00000551691 C1orf232A0A0U1RR37 186 aa3.06□□□□□ -1.92
LIMA1-208ENST00000551691 TEX48A0A1B0GUV7 120 aa3.06□□□□□ -1.92
LIMA1-208ENST00000551691 ACOD1A6NK06 481 aa3.06□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms