RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 LYG2Q86SG7 212 aa12.95□□□□□ -0.34
LIMS1-215ENST00000544547 ADIPOR2Q86V24 386 aa12.95□□□□□ -0.34
LIMS1-215ENST00000544547 NR2C2APQ86WQ0 139 aa12.95□□□□□ -0.34
LIMS1-215ENST00000544547 FRZBQ92765 325 aa12.95□□□□□ -0.34
LIMS1-215ENST00000544547 MS4A6EQ96DS6 147 aa12.95□□□□□ -0.34
LIMS1-215ENST00000544547 GIMAP5Q96F15 307 aa12.95□□□□□ -0.34
LIMS1-215ENST00000544547 OCSTAMPQ9BR26 566 aa12.95□□□□□ -0.34
LIMS1-215ENST00000544547 WDR76Q9H967 626 aa12.95□□□□□ -0.34
LIMS1-215ENST00000544547 RARRES3Q9UL19 164 aa12.95□□□□□ -0.34
LIMS1-215ENST00000544547 PARP14Q460N5 1801 aa12.94□□□□□ -0.34
LIMS1-215ENST00000544547 GSTZ1O43708 216 aaPredicted RBP12.94□□□□□ -0.34
LIMS1-215ENST00000544547 TACR3P29371 465 aa12.94□□□□□ -0.34
LIMS1-215ENST00000544547 PPA1Q15181 289 aa12.94□□□□□ -0.34
LIMS1-215ENST00000544547 LINC00346Q8IVM7 164 aa12.94□□□□□ -0.34
LIMS1-215ENST00000544547 VSTM2BA6NLU5 285 aa12.94□□□□□ -0.34
LIMS1-215ENST00000544547 P2RY10O00398 339 aa12.94□□□□□ -0.34
LIMS1-215ENST00000544547 DNAJB6O75190 326 aa12.94□□□□□ -0.34
LIMS1-215ENST00000544547 LAP3P28838 519 aa12.94□□□□□ -0.34
LIMS1-215ENST00000544547 CCR2P41597 374 aa12.94□□□□□ -0.34
LIMS1-215ENST00000544547 ZNF84P51523 738 aa12.94□□□□□ -0.34
LIMS1-215ENST00000544547 TMEM255AQ5JRV8 349 aa12.94□□□□□ -0.34
LIMS1-215ENST00000544547 DPY19L2P2Q6ZN68 376 aa12.94□□□□□ -0.34
LIMS1-215ENST00000544547 ZNF704Q6ZNC4 412 aaPredicted RBP12.94□□□□□ -0.34
LIMS1-215ENST00000544547 RFLNBQ8N5W9 214 aa12.94□□□□□ -0.34
LIMS1-215ENST00000544547 RGP1Q92546 391 aaPredicted RBP12.94□□□□□ -0.34
LIMS1-215ENST00000544547 VSX1Q9NZR4 365 aaPredicted RBP12.94□□□□□ -0.34
LIMS1-215ENST00000544547 SCGB1D1O95968 90 aa12.94□□□□□ -0.34
LIMS1-215ENST00000544547 ADGRE4PQ86SQ3 457 aa12.94□□□□□ -0.34
LIMS1-215ENST00000544547 OR5L2Q8NGL0 311 aa12.94□□□□□ -0.34
LIMS1-215ENST00000544547 PGAM5Q96HS1 289 aa12.94□□□□□ -0.34
LIMS1-215ENST00000544547 NKX2-4Q9H2Z4 354 aa12.94□□□□□ -0.34
LIMS1-215ENST00000544547 MMP26Q9NRE1 261 aa12.94□□□□□ -0.34
LIMS1-215ENST00000544547 CHD5Q8TDI0 1954 aa12.94□□□□□ -0.34
LIMS1-215ENST00000544547 ZNF638Q14966 1978 aaKnown RBP12.94□□□□□ -0.34
LIMS1-215ENST00000544547 MT-ND4LP03901 98 aa12.94□□□□□ -0.34
LIMS1-215ENST00000544547 QDPRP09417 244 aa12.94□□□□□ -0.34
LIMS1-215ENST00000544547 FABP4P15090 132 aa12.94□□□□□ -0.34
LIMS1-215ENST00000544547 SERTAD2Q14140 314 aa12.94□□□□□ -0.34
LIMS1-215ENST00000544547 INPP5JQ15735 1006 aaPredicted RBP12.94□□□□□ -0.34
LIMS1-215ENST00000544547 HAGHQ16775 308 aa12.94□□□□□ -0.34
LIMS1-215ENST00000544547 FAM69BQ5VUD6 431 aa12.94□□□□□ -0.34
LIMS1-215ENST00000544547 SEMA6DQ8NFY4 1073 aa12.94□□□□□ -0.34
LIMS1-215ENST00000544547 FGF13Q92913 245 aa12.94□□□□□ -0.34
LIMS1-215ENST00000544547 FGGYQ96C11 551 aa12.94□□□□□ -0.34
LIMS1-215ENST00000544547 BORCS8Q96FH0 119 aa12.94□□□□□ -0.34
LIMS1-215ENST00000544547 VN1R3Q9BXE9 311 aa12.94□□□□□ -0.34
LIMS1-215ENST00000544547 SLCO5A1Q9H2Y9 848 aa12.94□□□□□ -0.34
LIMS1-215ENST00000544547 MRPS18AQ9NVS2 196 aaKnown RBP12.94□□□□□ -0.34
LIMS1-215ENST00000544547 PRR13Q9NZ81 148 aa12.94□□□□□ -0.34
LIMS1-215ENST00000544547 SLC23A2Q9UGH3 650 aa12.94□□□□□ -0.34
LIMS1-215ENST00000544547 CD14P08571 375 aa12.93□□□□□ -0.34
LIMS1-215ENST00000544547 FCGR2CP31995 323 aa12.93□□□□□ -0.34
LIMS1-215ENST00000544547 C21orf58P58505 322 aa12.93□□□□□ -0.34
LIMS1-215ENST00000544547 STRADBQ9C0K7 418 aa12.93□□□□□ -0.34
LIMS1-215ENST00000544547 SYNGR4O95473 234 aa12.93□□□□□ -0.34
LIMS1-215ENST00000544547 BTCP35070 178 aa12.93□□□□□ -0.34
LIMS1-215ENST00000544547 CLEC12BQ2HXU8 276 aa12.93□□□□□ -0.34
LIMS1-215ENST00000544547 OR2A2Q6IF42 318 aa12.93□□□□□ -0.34
LIMS1-215ENST00000544547 SLC22A25Q6T423 547 aa12.93□□□□□ -0.34
LIMS1-215ENST00000544547 ZNF705AQ6ZN79 300 aaPredicted RBP12.93□□□□□ -0.34
LIMS1-215ENST00000544547 ZNF440Q8IYI8 595 aa12.93□□□□□ -0.34
LIMS1-215ENST00000544547 OR2G2Q8NGZ5 317 aa12.93□□□□□ -0.34
LIMS1-215ENST00000544547 APOOQ9BUR5 198 aa12.93□□□□□ -0.34
LIMS1-215ENST00000544547 BANF2Q9H503 90 aa12.93□□□□□ -0.34
LIMS1-215ENST00000544547 C8orf33Q9H7E9 229 aaPredicted RBP12.93□□□□□ -0.34
LIMS1-215ENST00000544547 UBE2J1Q9Y385 318 aaPredicted RBP12.93□□□□□ -0.34
LIMS1-215ENST00000544547 IGLV3-16A0A075B6K0 115 aa12.93□□□□□ -0.34
LIMS1-215ENST00000544547 C17orf113A0A1B0GUU1 675 aa12.93□□□□□ -0.34
LIMS1-215ENST00000544547 LAMTOR5O43504 91 aa12.93□□□□□ -0.34
LIMS1-215ENST00000544547 F2RL1P55085 397 aa12.93□□□□□ -0.34
LIMS1-215ENST00000544547 SNU13P55769 128 aaKnown RBP12.93□□□□□ -0.34
LIMS1-215ENST00000544547 RPL19P84098 196 aaKnown RBP12.93□□□□□ -0.34
LIMS1-215ENST00000544547 ZNF793Q6ZN11 406 aa12.93□□□□□ -0.34
LIMS1-215ENST00000544547 TERB2Q8NHR7 220 aa12.93□□□□□ -0.34
LIMS1-215ENST00000544547 SCGB1C1Q8TD33 95 aa12.93□□□□□ -0.34
LIMS1-215ENST00000544547 CMBLQ96DG6 245 aa12.93□□□□□ -0.34
LIMS1-215ENST00000544547 SERINC2Q96SA4 455 aa12.93□□□□□ -0.34
LIMS1-215ENST00000544547 ARHGDIGQ99819 225 aa12.93□□□□□ -0.34
LIMS1-215ENST00000544547 TMPRSS13Q9BYE2 586 aa12.93□□□□□ -0.34
LIMS1-215ENST00000544547 CD37P11049 281 aa12.92□□□□□ -0.34
LIMS1-215ENST00000544547 ALOX5APP20292 161 aa12.92□□□□□ -0.34
LIMS1-215ENST00000544547 GLO1Q04760 184 aa12.92□□□□□ -0.34
LIMS1-215ENST00000544547 Q3ZCU0 254 aa12.92□□□□□ -0.34
LIMS1-215ENST00000544547 ABHD12BQ7Z5M8 362 aaPredicted RBP12.92□□□□□ -0.34
LIMS1-215ENST00000544547 ZNF611Q8N823 705 aa12.92□□□□□ -0.34
LIMS1-215ENST00000544547 POM121Q96HA1 1249 aa12.92□□□□□ -0.34
LIMS1-215ENST00000544547 FBXO34Q9NWN3 711 aa12.92□□□□□ -0.34
LIMS1-215ENST00000544547 HCFC2Q9Y5Z7 792 aa12.92□□□□□ -0.34
LIMS1-215ENST00000544547 FAM230AA0A1W2PPH8 454 aa12.92□□□□□ -0.34
LIMS1-215ENST00000544547 NUDT19A8MXV4 375 aa12.92□□□□□ -0.34
LIMS1-215ENST00000544547 CYB5BO43169 146 aa12.92□□□□□ -0.34
LIMS1-215ENST00000544547 YIF1AO95070 293 aa12.92□□□□□ -0.34
LIMS1-215ENST00000544547 GPR75O95800 540 aa12.92□□□□□ -0.34
LIMS1-215ENST00000544547 PABPC1L2AQ5JQF8 200 aa12.92□□□□□ -0.34
LIMS1-215ENST00000544547 TMPPEQ6ZT21 453 aa12.92□□□□□ -0.34
LIMS1-215ENST00000544547 MAMDC2Q7Z304 686 aaPredicted RBP12.92□□□□□ -0.34
LIMS1-215ENST00000544547 CPEB2Q7Z5Q1 589 aaKnown RBP12.92□□□□□ -0.34
LIMS1-215ENST00000544547 TMEM151BQ8IW70 566 aa12.92□□□□□ -0.34
LIMS1-215ENST00000544547 MRPL43Q8N983 215 aaKnown RBP12.92□□□□□ -0.34
LIMS1-215ENST00000544547 FAM3CQ92520 227 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms