RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 CBR1P16152 277 aa11.51□□□□□ -0.57
USP53-209ENST00000514665 OPRM1P35372 400 aa11.51□□□□□ -0.57
USP53-209ENST00000514665 APOBEC1P41238 236 aaKnown RBP11.51□□□□□ -0.57
USP53-209ENST00000514665 OR2AK2Q8NG84 335 aa11.51□□□□□ -0.57
USP53-209ENST00000514665 ST7LQ8TDW4 575 aa11.51□□□□□ -0.57
USP53-209ENST00000514665 ZDHHC19Q8WVZ1 309 aaPredicted RBP11.51□□□□□ -0.57
USP53-209ENST00000514665 HLA-CQ95604 372 aa11.51□□□□□ -0.57
USP53-209ENST00000514665 OR2A5Q96R48 311 aa11.51□□□□□ -0.57
USP53-209ENST00000514665 GCM1Q9NP62 436 aa11.51□□□□□ -0.57
USP53-209ENST00000514665 SLC22A11Q9NSA0 550 aa11.51□□□□□ -0.57
USP53-209ENST00000514665 KCND3Q9UK17 655 aa11.51□□□□□ -0.57
USP53-209ENST00000514665 NXT1Q9UKK6 140 aaKnown RBP11.51□□□□□ -0.57
USP53-209ENST00000514665 A0A1B0GTH9 108 aa11.5□□□□□ -0.57
USP53-209ENST00000514665 TMEM221A6NGB7 291 aa11.5□□□□□ -0.57
USP53-209ENST00000514665 TRIM64A6NGJ6 449 aa11.5□□□□□ -0.57
USP53-209ENST00000514665 IFNA17P01571 189 aa11.5□□□□□ -0.57
USP53-209ENST00000514665 GABRG2P18507 467 aa11.5□□□□□ -0.57
USP53-209ENST00000514665 MVDP53602 400 aa11.5□□□□□ -0.57
USP53-209ENST00000514665 MFGE8Q08431 387 aaPredicted RBP11.5□□□□□ -0.57
USP53-209ENST00000514665 EMC4Q5J8M3 183 aa11.5□□□□□ -0.57
USP53-209ENST00000514665 AADACL3Q5VUY0 350 aa11.5□□□□□ -0.57
USP53-209ENST00000514665 MAMSTRQ6ZN01 415 aa11.5□□□□□ -0.57
USP53-209ENST00000514665 OR4C16Q8NGL9 310 aa11.5□□□□□ -0.57
USP53-209ENST00000514665 JAM3Q9BX67 310 aa11.5□□□□□ -0.57
USP53-209ENST00000514665 GPR173Q9NS66 373 aa11.5□□□□□ -0.57
USP53-209ENST00000514665 TRAPPC4Q9Y296 219 aa11.5□□□□□ -0.57
USP53-209ENST00000514665 A0A087WUJ7 227 aa11.5□□□□□ -0.57
USP53-209ENST00000514665 SPTY2D1-AS1A0A0U1RR47 76 aa11.5□□□□□ -0.57
USP53-209ENST00000514665 FAM221AA4D161 298 aa11.5□□□□□ -0.57
USP53-209ENST00000514665 TBX19O60806 448 aa11.5□□□□□ -0.57
USP53-209ENST00000514665 NXPH3O95157 252 aa11.5□□□□□ -0.57
USP53-209ENST00000514665 ENPP1P22413 925 aa11.5□□□□□ -0.57
USP53-209ENST00000514665 RFX2P48378 723 aa11.5□□□□□ -0.57
USP53-209ENST00000514665 TCTN1Q2MV58 587 aa11.5□□□□□ -0.57
USP53-209ENST00000514665 GRAMD2AQ8IUY3 354 aa11.5□□□□□ -0.57
USP53-209ENST00000514665 ABHD5Q8WTS1 349 aa11.5□□□□□ -0.57
USP53-209ENST00000514665 ZNF707Q96C28 371 aaPredicted RBP11.5□□□□□ -0.57
USP53-209ENST00000514665 SLC25A31Q9H0C2 315 aa11.5□□□□□ -0.57
USP53-209ENST00000514665 TXNIPQ9H3M7 391 aa11.5□□□□□ -0.57
USP53-209ENST00000514665 PLEKHA3Q9HB20 300 aa11.5□□□□□ -0.57
USP53-209ENST00000514665 TRAPPC2LQ9UL33 140 aa11.5□□□□□ -0.57
USP53-209ENST00000514665 B9D1Q9UPM9 204 aa11.5□□□□□ -0.57
USP53-209ENST00000514665 A0A0B4J2E0 115 aa11.5□□□□□ -0.57
USP53-209ENST00000514665 CXorf51AA0A1B0GTR3 108 aa11.5□□□□□ -0.57
USP53-209ENST00000514665 A0A1B0GX12 115 aa11.5□□□□□ -0.57
USP53-209ENST00000514665 OR5H14A6NHG9 310 aa11.5□□□□□ -0.57
USP53-209ENST00000514665 BAMBIQ13145 260 aa11.5□□□□□ -0.57
USP53-209ENST00000514665 TIGD3Q6B0B8 471 aa11.5□□□□□ -0.57
USP53-209ENST00000514665 TMEM68Q96MH6 324 aa11.5□□□□□ -0.57
USP53-209ENST00000514665 PLA2G2FQ9BZM2 168 aa11.5□□□□□ -0.57
USP53-209ENST00000514665 CTSFQ9UBX1 484 aa11.5□□□□□ -0.57
USP53-209ENST00000514665 IGHV3-64DA0A0J9YX35 117 aa11.49□□□□□ -0.57
USP53-209ENST00000514665 TEX51A0A1B0GUA7 166 aa11.49□□□□□ -0.57
USP53-209ENST00000514665 GPR137BO60478 399 aa11.49□□□□□ -0.57
USP53-209ENST00000514665 NKX2-2O95096 273 aa11.49□□□□□ -0.57
USP53-209ENST00000514665 ICAM2P13598 275 aa11.49□□□□□ -0.57
USP53-209ENST00000514665 PPP1CAP62136 330 aa11.49□□□□□ -0.57
USP53-209ENST00000514665 SNRPNP63162 240 aaKnown RBP11.49□□□□□ -0.57
USP53-209ENST00000514665 MRPS34P82930 218 aaKnown RBP11.49□□□□□ -0.57
USP53-209ENST00000514665 FAM74A1Q5RGS3 127 aa11.49□□□□□ -0.57
USP53-209ENST00000514665 KIAA0907Q7Z7F0 614 aaPredicted RBP11.49□□□□□ -0.57
USP53-209ENST00000514665 OR52N5Q8NH56 324 aa11.49□□□□□ -0.57
USP53-209ENST00000514665 NT5CQ8TCD5 201 aa11.49□□□□□ -0.57
USP53-209ENST00000514665 WDR89Q96FK6 387 aaPredicted RBP11.49□□□□□ -0.57
USP53-209ENST00000514665 LRFN5Q96NI6 719 aa11.49□□□□□ -0.57
USP53-209ENST00000514665 ZNF223Q9UK11 482 aaPredicted RBP11.49□□□□□ -0.57
USP53-209ENST00000514665 PIKFYVEQ9Y2I7 2098 aa11.49□□□□□ -0.57
USP53-209ENST00000514665 NCOR1O75376 2440 aa11.49□□□□□ -0.57
USP53-209ENST00000514665 SERTM1A2A2V5 107 aa11.49□□□□□ -0.57
USP53-209ENST00000514665 H0YIG0 161 aa11.49□□□□□ -0.57
USP53-209ENST00000514665 EFSO43281 561 aa11.49□□□□□ -0.57
USP53-209ENST00000514665 DCAF12Q5T6F0 453 aa11.49□□□□□ -0.57
USP53-209ENST00000514665 PPP1R35Q8TAP8 253 aa11.49□□□□□ -0.57
USP53-209ENST00000514665 OR6C68A6NDL8 312 aa11.49□□□□□ -0.57
USP53-209ENST00000514665 CEBPZOSA8MTT3 80 aa11.49□□□□□ -0.57
USP53-209ENST00000514665 SGCEO43556 437 aa11.49□□□□□ -0.57
USP53-209ENST00000514665 GPANK1O95872 356 aa11.49□□□□□ -0.57
USP53-209ENST00000514665 IRF2P14316 349 aa11.49□□□□□ -0.57
USP53-209ENST00000514665 SERPINF1P36955 418 aa11.49□□□□□ -0.57
USP53-209ENST00000514665 TAF9Q16594 264 aa11.49□□□□□ -0.57
USP53-209ENST00000514665 H3F3CQ6NXT2 135 aa11.49□□□□□ -0.57
USP53-209ENST00000514665 NAXDQ8IW45 347 aa11.49□□□□□ -0.57
USP53-209ENST00000514665 MAML2Q8IZL2 1156 aaPredicted RBP11.49□□□□□ -0.57
USP53-209ENST00000514665 PRSS35Q8N3Z0 413 aa11.49□□□□□ -0.57
USP53-209ENST00000514665 OR5L1Q8NGL2 311 aa11.49□□□□□ -0.57
USP53-209ENST00000514665 MARC2Q969Z3 335 aa11.49□□□□□ -0.57
USP53-209ENST00000514665 ABHD1Q96SE0 405 aa11.49□□□□□ -0.57
USP53-209ENST00000514665 SCPEP1Q9HB40 452 aa11.49□□□□□ -0.57
USP53-209ENST00000514665 PYCARD-AS1I3L0S3 204 aa11.49□□□□□ -0.57
USP53-209ENST00000514665 ABOP16442 354 aa11.49□□□□□ -0.57
USP53-209ENST00000514665 ERVK-16P61578 105 aa11.49□□□□□ -0.57
USP53-209ENST00000514665 NKX6-1P78426 367 aaPredicted RBP11.49□□□□□ -0.57
USP53-209ENST00000514665 PCK2Q16822 640 aa11.49□□□□□ -0.57
USP53-209ENST00000514665 SHEQ5VZ18 495 aa11.49□□□□□ -0.57
USP53-209ENST00000514665 FAM109BQ6ICB4 259 aaPredicted RBP11.49□□□□□ -0.57
USP53-209ENST00000514665 SLC22A25Q6T423 547 aa11.49□□□□□ -0.57
USP53-209ENST00000514665 MARCH1Q8TCQ1 289 aa11.49□□□□□ -0.57
USP53-209ENST00000514665 SLC25A43Q8WUT9 341 aaPredicted RBP11.49□□□□□ -0.57
USP53-209ENST00000514665 MED30Q96HR3 178 aa11.49□□□□□ -0.57
USP53-209ENST00000514665 PIGQQ9BRB3 760 aa11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms