RNA–Protein interactions for RNA: ENST00000513578.5

RNF4-220, Transcript of ring finger protein 4, humanhuman

TSL 4

Gene RNF4, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-220ENST00000513578 FOXN4Q96NZ1 517 aa7.41□□□□□ -1.22
RNF4-220ENST00000513578 ZNF385AQ96PM9 386 aaKnown RBP7.41□□□□□ -1.22
RNF4-220ENST00000513578 GFI1Q99684 422 aa7.41□□□□□ -1.22
RNF4-220ENST00000513578 LINC00470Q9BZP3 86 aa7.41□□□□□ -1.22
RNF4-220ENST00000513578 NELFAQ9H3P2 528 aa7.41□□□□□ -1.22
RNF4-220ENST00000513578 TCF7L1Q9HCS4 588 aa7.41□□□□□ -1.22
RNF4-220ENST00000513578 DDX28Q9NUL7 540 aaKnown RBP7.41□□□□□ -1.22
RNF4-220ENST00000513578 FAM206AQ9NX38 181 aa7.41□□□□□ -1.22
RNF4-220ENST00000513578 DLL3Q9NYJ7 618 aa7.41□□□□□ -1.22
RNF4-220ENST00000513578 PLA2G3Q9NZ20 509 aa7.41□□□□□ -1.22
RNF4-220ENST00000513578 GDF2Q9UK05 429 aaPredicted RBP7.41□□□□□ -1.22
RNF4-220ENST00000513578 OR52A1Q9UKL2 312 aa7.41□□□□□ -1.22
RNF4-220ENST00000513578 HHLA2Q9UM44 414 aa7.41□□□□□ -1.22
RNF4-220ENST00000513578 ETV7Q9Y603 341 aa7.41□□□□□ -1.22
RNF4-220ENST00000513578 DMXL1Q9Y485 3027 aa7.41□□□□□ -1.22
RNF4-220ENST00000513578 VPS13AQ96RL7 3174 aa7.41□□□□□ -1.22
RNF4-220ENST00000513578 TNRC6AQ8NDV7 1962 aaKnown RBP7.4□□□□□ -1.22
RNF4-220ENST00000513578 CNTRLQ7Z7A1 2325 aa7.4□□□□□ -1.22
RNF4-220ENST00000513578 USP24Q9UPU5 2620 aa7.4□□□□□ -1.22
RNF4-220ENST00000513578 A0A1B0GTH9 108 aa7.4□□□□□ -1.22
RNF4-220ENST00000513578 TMEM269A0A1B0GVZ9 245 aa7.4□□□□□ -1.22
RNF4-220ENST00000513578 SMIM30A4D0T7 59 aa7.4□□□□□ -1.22
RNF4-220ENST00000513578 MEGF11A6BM72 1044 aa7.4□□□□□ -1.22
RNF4-220ENST00000513578 OR6C65A6NJZ3 312 aa7.4□□□□□ -1.22
RNF4-220ENST00000513578 IFITM5A6NNB3 132 aa7.4□□□□□ -1.22
RNF4-220ENST00000513578 ZNF891A8MT65 544 aaPredicted RBP7.4□□□□□ -1.22
RNF4-220ENST00000513578 CTDSPLO15194 276 aa7.4□□□□□ -1.22
RNF4-220ENST00000513578 WNT11O96014 354 aa7.4□□□□□ -1.22
RNF4-220ENST00000513578 CD2P06729 351 aa7.4□□□□□ -1.22
RNF4-220ENST00000513578 CSF3P09919 207 aa7.4□□□□□ -1.22
RNF4-220ENST00000513578 CPN1P15169 458 aa7.4□□□□□ -1.22
RNF4-220ENST00000513578 IGFBP3P17936 291 aaPredicted RBP7.4□□□□□ -1.22
RNF4-220ENST00000513578 TALDO1P37837 337 aa7.4□□□□□ -1.22
RNF4-220ENST00000513578 MNDAP41218 407 aa7.4□□□□□ -1.22
RNF4-220ENST00000513578 GUCA1AP43080 201 aaPredicted RBP7.4□□□□□ -1.22
RNF4-220ENST00000513578 STARP49675 285 aa7.4□□□□□ -1.22
RNF4-220ENST00000513578 MEOX1P50221 254 aa7.4□□□□□ -1.22
RNF4-220ENST00000513578 TNFSF10P50591 281 aa7.4□□□□□ -1.22
RNF4-220ENST00000513578 PSMA6P60900 246 aaKnown RBP7.4□□□□□ -1.22
RNF4-220ENST00000513578 GRB2P62993 217 aaKnown RBP7.4□□□□□ -1.22
RNF4-220ENST00000513578 MFGE8Q08431 387 aaPredicted RBP7.4□□□□□ -1.22
RNF4-220ENST00000513578 ASAH1Q13510 395 aa7.4□□□□□ -1.22
RNF4-220ENST00000513578 BAK1Q16611 211 aa7.4□□□□□ -1.22
RNF4-220ENST00000513578 PHYHD1Q5SRE7 291 aa7.4□□□□□ -1.22
RNF4-220ENST00000513578 FAM27BQ5VT28 67 aa7.4□□□□□ -1.22
RNF4-220ENST00000513578 PYHIN1Q6K0P9 492 aa7.4□□□□□ -1.22
RNF4-220ENST00000513578 KLHL24Q6TFL4 600 aa7.4□□□□□ -1.22
RNF4-220ENST00000513578 FCRLAQ7L513 359 aa7.4□□□□□ -1.22
RNF4-220ENST00000513578 GALNTL5Q7Z4T8 443 aa7.4□□□□□ -1.22
RNF4-220ENST00000513578 SYT9Q86SS6 491 aa7.4□□□□□ -1.22
RNF4-220ENST00000513578 LINC00346Q8IVM7 164 aa7.4□□□□□ -1.22
RNF4-220ENST00000513578 ELMOD2Q8IZ81 293 aa7.4□□□□□ -1.22
RNF4-220ENST00000513578 MEIOBQ8N635 442 aa7.4□□□□□ -1.22
RNF4-220ENST00000513578 CCDC54Q8NEL0 328 aa7.4□□□□□ -1.22
RNF4-220ENST00000513578 GJC3Q8NFK1 279 aa7.4□□□□□ -1.22
RNF4-220ENST00000513578 TRMT10AQ8TBZ6 339 aaKnown RBP7.4□□□□□ -1.22
RNF4-220ENST00000513578 ASB5Q8WWX0 329 aa7.4□□□□□ -1.22
RNF4-220ENST00000513578 SEC61A2Q9H9S3 476 aa7.4□□□□□ -1.22
RNF4-220ENST00000513578 GP6Q9HCN6 339 aa7.4□□□□□ -1.22
RNF4-220ENST00000513578 PNRC2Q9NPJ4 139 aaKnown RBP7.4□□□□□ -1.22
RNF4-220ENST00000513578 B3GAT2Q9NPZ5 323 aa7.4□□□□□ -1.22
RNF4-220ENST00000513578 NUFIP1Q9UHK0 495 aaKnown RBP7.4□□□□□ -1.22
RNF4-220ENST00000513578 SLC22A13Q9Y226 551 aa7.4□□□□□ -1.22
RNF4-220ENST00000513578 AK6Q9Y3D8 172 aaKnown RBP7.4□□□□□ -1.22
RNF4-220ENST00000513578 PCDHGA9Q9Y5G4 932 aaKnown RBP7.4□□□□□ -1.22
RNF4-220ENST00000513578 EP300Q09472 2414 aaPredicted RBP7.4□□□□□ -1.23
RNF4-220ENST00000513578 GCN1Q92616 2671 aaKnown RBP7.39□□□□□ -1.23
RNF4-220ENST00000513578 ARHGAP21Q5T5U3 1957 aa7.39□□□□□ -1.23
RNF4-220ENST00000513578 IGHV3-15A0A0B4J1V0 119 aa7.39□□□□□ -1.23
RNF4-220ENST00000513578 A0A1W2PPK0 400 aa7.39□□□□□ -1.23
RNF4-220ENST00000513578 ZNF724A8MTY0 619 aa7.39□□□□□ -1.23
RNF4-220ENST00000513578 H0YC42 278 aa7.39□□□□□ -1.23
RNF4-220ENST00000513578 ACOT7O00154 380 aa7.39□□□□□ -1.23
RNF4-220ENST00000513578 NKX2-8O15522 239 aa7.39□□□□□ -1.23
RNF4-220ENST00000513578 F10P00742 488 aa7.39□□□□□ -1.23
RNF4-220ENST00000513578 APOC1P02654 83 aa7.39□□□□□ -1.23
RNF4-220ENST00000513578 TTRP02766 147 aa7.39□□□□□ -1.23
RNF4-220ENST00000513578 EIF4EP06730 217 aaKnown RBP7.39□□□□□ -1.23
RNF4-220ENST00000513578 CST2P09228 141 aa7.39□□□□□ -1.23
RNF4-220ENST00000513578 SLC2A2P11168 524 aaPredicted RBP7.39□□□□□ -1.23
RNF4-220ENST00000513578 ADRA2CP18825 462 aa7.39□□□□□ -1.23
RNF4-220ENST00000513578 CCL1P22362 96 aa7.39□□□□□ -1.23
RNF4-220ENST00000513578 OTX1P32242 354 aaPredicted RBP7.39□□□□□ -1.23
RNF4-220ENST00000513578 MAGEA5P43359 124 aa7.39□□□□□ -1.23
RNF4-220ENST00000513578 RANBP1P43487 201 aa7.39□□□□□ -1.23
RNF4-220ENST00000513578 EIF1AXP47813 144 aaKnown RBP7.39□□□□□ -1.23
RNF4-220ENST00000513578 SELENOPP49908 381 aa7.39□□□□□ -1.23
RNF4-220ENST00000513578 PPIAP62937 165 aaKnown RBP7.39□□□□□ -1.23
RNF4-220ENST00000513578 PITPNAQ00169 270 aa7.39□□□□□ -1.23
RNF4-220ENST00000513578 PLGLB1Q02325 96 aa7.39□□□□□ -1.23
RNF4-220ENST00000513578 CLN3Q13286 438 aa7.39□□□□□ -1.23
RNF4-220ENST00000513578 ENDOGQ14249 297 aaKnown RBP7.39□□□□□ -1.23
RNF4-220ENST00000513578 SLC10A1Q14973 349 aa7.39□□□□□ -1.23
RNF4-220ENST00000513578 ZNF766Q5HY98 468 aa7.39□□□□□ -1.23
RNF4-220ENST00000513578 UBE2NLQ5JXB2 153 aa7.39□□□□□ -1.23
RNF4-220ENST00000513578 BCL2L15Q5TBC7 163 aa7.39□□□□□ -1.23
RNF4-220ENST00000513578 ATP1A1-AS1Q5TC04 95 aa7.39□□□□□ -1.23
RNF4-220ENST00000513578 CARD17Q5XLA6 110 aa7.39□□□□□ -1.23
RNF4-220ENST00000513578 FAM166AQ6J272 317 aa7.39□□□□□ -1.23
RNF4-220ENST00000513578 CFAP77Q6ZQR2 320 aa7.39□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms