RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 ELFN2Q5R3F8 820 aa12.99□□□□□ -0.33
NUP54-213ENST00000513352 USP51Q70EK9 711 aa12.99□□□□□ -0.33
NUP54-213ENST00000513352 CPEB3Q8NE35 698 aaKnown RBP12.99□□□□□ -0.33
NUP54-213ENST00000513352 OR1J2Q8NGS2 313 aa12.99□□□□□ -0.33
NUP54-213ENST00000513352 ZNF75AQ96N20 296 aa12.99□□□□□ -0.33
NUP54-213ENST00000513352 HS3ST6Q96QI5 342 aa12.99□□□□□ -0.33
NUP54-213ENST00000513352 COPS4Q9BT78 406 aa12.99□□□□□ -0.33
NUP54-213ENST00000513352 YIPF3Q9GZM5 350 aa12.99□□□□□ -0.33
NUP54-213ENST00000513352 HDHD2Q9H0R4 259 aa12.99□□□□□ -0.33
NUP54-213ENST00000513352 OR51B6Q9H340 312 aa12.99□□□□□ -0.33
NUP54-213ENST00000513352 Q9H521 79 aa12.99□□□□□ -0.33
NUP54-213ENST00000513352 ADGRL4Q9HBW9 690 aa12.99□□□□□ -0.33
NUP54-213ENST00000513352 AMBNQ9NP70 447 aa12.99□□□□□ -0.33
NUP54-213ENST00000513352 RAB26Q9ULW5 256 aa12.99□□□□□ -0.33
NUP54-213ENST00000513352 RNF115Q9Y4L5 304 aa12.99□□□□□ -0.33
NUP54-213ENST00000513352 ATP23Q9Y6H3 246 aa12.99□□□□□ -0.33
NUP54-213ENST00000513352 ABCA4P78363 2273 aa12.99□□□□□ -0.33
NUP54-213ENST00000513352 RTTNQ86VV8 2226 aa12.98□□□□□ -0.33
NUP54-213ENST00000513352 IGHV2OR16-5A0A0B4J2B6 119 aa12.98□□□□□ -0.33
NUP54-213ENST00000513352 ZNF670-ZNF695F2Z2N8 137 aa12.98□□□□□ -0.33
NUP54-213ENST00000513352 WBP4O75554 376 aaKnown RBP12.98□□□□□ -0.33
NUP54-213ENST00000513352 GOSR1O95249 250 aa12.98□□□□□ -0.33
NUP54-213ENST00000513352 LYNP07948 512 aa12.98□□□□□ -0.33
NUP54-213ENST00000513352 SBK2P0C263 348 aa12.98□□□□□ -0.33
NUP54-213ENST00000513352 CALCRP30988 508 aa12.98□□□□□ -0.33
NUP54-213ENST00000513352 ISL1P61371 349 aa12.98□□□□□ -0.33
NUP54-213ENST00000513352 GALK2Q01415 458 aa12.98□□□□□ -0.33
NUP54-213ENST00000513352 TLE4Q04727 773 aa12.98□□□□□ -0.33
NUP54-213ENST00000513352 KRT80Q6KB66 452 aa12.98□□□□□ -0.33
NUP54-213ENST00000513352 CDC20BQ86Y33 519 aa12.98□□□□□ -0.33
NUP54-213ENST00000513352 ZNF584Q8IVC4 421 aa12.98□□□□□ -0.33
NUP54-213ENST00000513352 ZNF454Q8N9F8 522 aa12.98□□□□□ -0.33
NUP54-213ENST00000513352 KBTBD8Q8NFY9 601 aa12.98□□□□□ -0.33
NUP54-213ENST00000513352 OR10H4Q8NGA5 316 aa12.98□□□□□ -0.33
NUP54-213ENST00000513352 OR4F15Q8NGB8 312 aa12.98□□□□□ -0.33
NUP54-213ENST00000513352 OR1F12Q8NHA8 337 aa12.98□□□□□ -0.33
NUP54-213ENST00000513352 OTOSQ8NHW6 89 aa12.98□□□□□ -0.33
NUP54-213ENST00000513352 SLAMF6Q96DU3 332 aa12.98□□□□□ -0.33
NUP54-213ENST00000513352 MAP6Q96JE9 813 aa12.98□□□□□ -0.33
NUP54-213ENST00000513352 ATF6BQ99941 703 aa12.98□□□□□ -0.33
NUP54-213ENST00000513352 ABHD6Q9BV23 337 aa12.98□□□□□ -0.33
NUP54-213ENST00000513352 ANKRD60Q9BZ19 345 aa12.98□□□□□ -0.33
NUP54-213ENST00000513352 HAO2Q9NYQ3 351 aa12.98□□□□□ -0.33
NUP54-213ENST00000513352 KLHDC2Q9Y2U9 406 aa12.98□□□□□ -0.33
NUP54-213ENST00000513352 RPL36Q9Y3U8 105 aaKnown RBP12.98□□□□□ -0.33
NUP54-213ENST00000513352 TMEM14AQ9Y6G1 99 aa12.98□□□□□ -0.33
NUP54-213ENST00000513352 OR6C6A6NF89 314 aa12.97□□□□□ -0.33
NUP54-213ENST00000513352 ZNF878C9JN71 531 aa12.97□□□□□ -0.33
NUP54-213ENST00000513352 SYNGR3O43761 229 aa12.97□□□□□ -0.33
NUP54-213ENST00000513352 FAM20BO75063 409 aa12.97□□□□□ -0.33
NUP54-213ENST00000513352 PLAUP00749 431 aa12.97□□□□□ -0.33
NUP54-213ENST00000513352 MYF6P23409 242 aa12.97□□□□□ -0.33
NUP54-213ENST00000513352 HIST1H3AP68431 136 aa12.97□□□□□ -0.33
NUP54-213ENST00000513352 CDK5R2Q13319 367 aa12.97□□□□□ -0.33
NUP54-213ENST00000513352 PCK2Q16822 640 aa12.97□□□□□ -0.33
NUP54-213ENST00000513352 HIST2H3PS2Q5TEC6 136 aa12.97□□□□□ -0.33
NUP54-213ENST00000513352 ZNF704Q6ZNC4 412 aaPredicted RBP12.97□□□□□ -0.33
NUP54-213ENST00000513352 HIST2H3AQ71DI3 136 aa12.97□□□□□ -0.33
NUP54-213ENST00000513352 KRT77Q7Z794 578 aa12.97□□□□□ -0.33
NUP54-213ENST00000513352 IL17RDQ8NFM7 739 aa12.97□□□□□ -0.33
NUP54-213ENST00000513352 ST7LQ8TDW4 575 aa12.97□□□□□ -0.33
NUP54-213ENST00000513352 SLC7A6Q92536 515 aa12.97□□□□□ -0.33
NUP54-213ENST00000513352 COQ7Q99807 217 aa12.97□□□□□ -0.33
NUP54-213ENST00000513352 EIF3KQ9UBQ5 218 aaKnown RBP12.97□□□□□ -0.33
NUP54-213ENST00000513352 IKZF2Q9UKS7 526 aa12.97□□□□□ -0.33
NUP54-213ENST00000513352 COPS3Q9UNS2 423 aa12.97□□□□□ -0.33
NUP54-213ENST00000513352 GRIP1Q9Y3R0 1128 aa12.97□□□□□ -0.33
NUP54-213ENST00000513352 SPEF1Q9Y4P9 236 aa12.97□□□□□ -0.33
NUP54-213ENST00000513352 LOC100509620A0A075B734 347 aa12.96□□□□□ -0.33
NUP54-213ENST00000513352 F5H5K5 113 aa12.96□□□□□ -0.33
NUP54-213ENST00000513352 PSMD9O00233 223 aa12.96□□□□□ -0.33
NUP54-213ENST00000513352 ABHD16AO95870 558 aa12.96□□□□□ -0.33
NUP54-213ENST00000513352 DBHP09172 617 aa12.96□□□□□ -0.33
NUP54-213ENST00000513352 H2BFMP0C1H6 154 aa12.96□□□□□ -0.33
NUP54-213ENST00000513352 FAM157BP0CG42 384 aa12.96□□□□□ -0.33
NUP54-213ENST00000513352 COX5BP10606 129 aa12.96□□□□□ -0.33
NUP54-213ENST00000513352 LOXP28300 417 aaPredicted RBP12.96□□□□□ -0.33
NUP54-213ENST00000513352 HSD11B1P28845 292 aa12.96□□□□□ -0.33
NUP54-213ENST00000513352 SSTR2P30874 369 aa12.96□□□□□ -0.33
NUP54-213ENST00000513352 SLC6A9P48067 706 aa12.96□□□□□ -0.33
NUP54-213ENST00000513352 CXCR4P61073 352 aa12.96□□□□□ -0.33
NUP54-213ENST00000513352 ECH1Q13011 328 aa12.96□□□□□ -0.33
NUP54-213ENST00000513352 VHLLQ6RSH7 139 aa12.96□□□□□ -0.33
NUP54-213ENST00000513352 HIST2H2ABQ8IUE6 130 aaPredicted RBP12.96□□□□□ -0.33
NUP54-213ENST00000513352 PAQR4Q8N4S7 273 aaPredicted RBP12.96□□□□□ -0.33
NUP54-213ENST00000513352 BPIFB6Q8NFQ5 453 aa12.96□□□□□ -0.33
NUP54-213ENST00000513352 OR10S1Q8NGN2 331 aa12.96□□□□□ -0.33
NUP54-213ENST00000513352 NEUROG1Q92886 237 aa12.96□□□□□ -0.33
NUP54-213ENST00000513352 SPTSSAQ969W0 71 aa12.96□□□□□ -0.33
NUP54-213ENST00000513352 LGALS12Q96DT0 336 aa12.96□□□□□ -0.33
NUP54-213ENST00000513352 POM121L2Q96KW2 1035 aa12.96□□□□□ -0.33
NUP54-213ENST00000513352 AMELYQ99218 206 aa12.96□□□□□ -0.33
NUP54-213ENST00000513352 MNTQ99583 582 aa12.96□□□□□ -0.33
NUP54-213ENST00000513352 CLEC4MQ9H2X3 399 aaPredicted RBP12.96□□□□□ -0.33
NUP54-213ENST00000513352 UBTD1Q9HAC8 227 aa12.96□□□□□ -0.33
NUP54-213ENST00000513352 PNRC2Q9NPJ4 139 aaKnown RBP12.96□□□□□ -0.33
NUP54-213ENST00000513352 ATPIF1Q9UII2 106 aa12.96□□□□□ -0.33
NUP54-213ENST00000513352 DAPL1A0PJW8 107 aa12.95□□□□□ -0.34
NUP54-213ENST00000513352 SHISA9B4DS77 424 aa12.95□□□□□ -0.34
NUP54-213ENST00000513352 PHYHO14832 338 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms