RNA–Protein interactions for RNA: ENST00000491592.1

RTN4-215, Transcript of reticulon 4, human

TSL 2

Gene RTN4, Length 860 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RTN4-215	ENST00000491592	KDM4D	Q6B0I6	523 aa		4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	RTL6	Q6ICC9	239 aa		4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	SPESP1	Q6UW49	350 aa		4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	ZNF841	Q6ZN19	808 aa		4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	GDPGP1	Q6ZNW5	385 aa		4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	RNF165	Q6ZSG1	346 aa		4.18	□□□□□ -1.74
RTN4-215	ENST00000491592		Q6ZSV7	163 aa		4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	SLC16A14	Q7RTX9	510 aa		4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	RNF130	Q86XS8	419 aa		4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	APRG1	Q8IVJ8	170 aa		4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	DEFB106A	Q8N104	65 aa		4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	MUC20	Q8N307	709 aa	Predicted RBP	4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	GCSAM	Q8N6F7	178 aa		4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	TMEM99	Q8N816	258 aa		4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	C12orf29	Q8N999	325 aa		4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	LRRC75A	Q8NAA5	344 aa		4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	ACBD4	Q8NC06	268 aa		4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	OR2T12	Q8NG77	320 aa		4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	OR56A4	Q8NGH8	313 aa		4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	OR1L6	Q8NGR2	347 aa		4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	OR6N2	Q8NGY6	317 aa		4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	OR2L8	Q8NGY9	312 aa		4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	OR4L1	Q8NH43	312 aa		4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	OR52I2	Q8NH67	350 aa		4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	STAG3L4	Q8TBR4	150 aa		4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	NUDCD2	Q8WVJ2	157 aa		4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	SLC7A6	Q92536	515 aa		4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	CDS1	Q92903	461 aa		4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	C18orf25	Q96B23	403 aa	Predicted RBP	4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	OMA1	Q96E52	524 aa		4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	MRPL53	Q96EL3	112 aa	Known RBP	4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	PELI1	Q96FA3	418 aa		4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	URB1-AS1	Q96HZ7	61 aa		4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	CXorf58	Q96LI9	332 aa		4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	COL21A1	Q96P44	957 aa		4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	SLC38A2	Q96QD8	506 aa		4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	PITX2	Q99697	317 aa		4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	ZNF426	Q9BUY5	554 aa		4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	ZNF717	Q9BY31	904 aa	Predicted RBP	4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	OR51B5	Q9H339	312 aa		4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	MFSD1	Q9H3U5	465 aa		4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	PPP1R3E	Q9H7J1	279 aa		4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	ZNF556	Q9HAH1	456 aa		4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	HRASLS	Q9HDD0	168 aa		4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	ASCL3	Q9NQ33	180 aa		4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	DCAF13	Q9NV06	445 aa	Known RBP	4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	FBXL12	Q9NXK8	326 aa		4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	CYB5R1	Q9UHQ9	305 aa		4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	MRTO4	Q9UKD2	239 aa	Known RBP	4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	ACSL5	Q9ULC5	683 aa		4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	GINS2	Q9Y248	185 aa		4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	RNF115	Q9Y4L5	304 aa		4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	RIPK3	Q9Y572	518 aa		4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	GMPPB	Q9Y5P6	360 aa		4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	INSL5	Q9Y5Q6	135 aa		4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	TSC2	P49815	1807 aa		4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	ANKRD31	Q8N7Z5	1873 aa		4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	COL1A2	P08123	1366 aa		4.17	□□□□□ -1.74
RTN4-215	ENST00000491592	ZSWIM8	A7E2V4	1837 aa		4.17	□□□□□ -1.74
RTN4-215	ENST00000491592		A0A1W2PQL4	384 aa	Predicted RBP	4.17	□□□□□ -1.74
RTN4-215	ENST00000491592	RPS10-NUDT3	A0A1W2PQS6	291 aa		4.17	□□□□□ -1.74
RTN4-215	ENST00000491592	MEIOC	A2RUB1	952 aa		4.17	□□□□□ -1.74
RTN4-215	ENST00000491592	LINC00862	A6NCI5	91 aa		4.17	□□□□□ -1.74
RTN4-215	ENST00000491592	LRRC30	A6NM36	301 aa		4.17	□□□□□ -1.74
RTN4-215	ENST00000491592		E9PQ18	207 aa		4.17	□□□□□ -1.74
RTN4-215	ENST00000491592	BLOC1S5-TXNDC5	H3BN57	136 aa		4.17	□□□□□ -1.74
RTN4-215	ENST00000491592	XPNPEP2	O43895	674 aa		4.17	□□□□□ -1.74
RTN4-215	ENST00000491592	ZNF780A	O75290	641 aa	Predicted RBP	4.17	□□□□□ -1.74
RTN4-215	ENST00000491592	BRI3	O95415	125 aa		4.17	□□□□□ -1.74
RTN4-215	ENST00000491592	C1QB	P02746	253 aa		4.17	□□□□□ -1.74
RTN4-215	ENST00000491592	ALDOB	P05062	364 aa		4.17	□□□□□ -1.74
RTN4-215	ENST00000491592	IGKV2-30	P06310	120 aa		4.17	□□□□□ -1.74
RTN4-215	ENST00000491592	CDK1	P06493	297 aa		4.17	□□□□□ -1.74
RTN4-215	ENST00000491592	GP1BA	P07359	652 aa		4.17	□□□□□ -1.74
RTN4-215	ENST00000491592	LINC00032	P0C843	101 aa		4.17	□□□□□ -1.74
RTN4-215	ENST00000491592	COX5B	P10606	129 aa		4.17	□□□□□ -1.74
RTN4-215	ENST00000491592	CD1D	P15813	335 aa		4.17	□□□□□ -1.74
RTN4-215	ENST00000491592	OGN	P20774	298 aa	Known RBP	4.17	□□□□□ -1.74
RTN4-215	ENST00000491592	WARS	P23381	471 aa	Known RBP	4.17	□□□□□ -1.74
RTN4-215	ENST00000491592	GADD45A	P24522	165 aa		4.17	□□□□□ -1.74
RTN4-215	ENST00000491592	HTR2C	P28335	458 aa		4.17	□□□□□ -1.74
RTN4-215	ENST00000491592	FMO3	P31513	532 aa		4.17	□□□□□ -1.74
RTN4-215	ENST00000491592	RPL13A	P40429	203 aa	Known RBP	4.17	□□□□□ -1.74
RTN4-215	ENST00000491592	ID1	P41134	155 aa		4.17	□□□□□ -1.74
RTN4-215	ENST00000491592	CSK	P41240	450 aa		4.17	□□□□□ -1.74
RTN4-215	ENST00000491592	IDH2	P48735	452 aa	Known RBP	4.17	□□□□□ -1.74
RTN4-215	ENST00000491592	NOVA1	P51513	510 aa	Known RBP	4.17	□□□□□ -1.74
RTN4-215	ENST00000491592	DIO3	P55073	304 aa		4.17	□□□□□ -1.74
RTN4-215	ENST00000491592	CCL7	P80098	99 aa		4.17	□□□□□ -1.74
RTN4-215	ENST00000491592	ASAH1	Q13510	395 aa		4.17	□□□□□ -1.74
RTN4-215	ENST00000491592	PON3	Q15166	354 aa		4.17	□□□□□ -1.74
RTN4-215	ENST00000491592	SPHAR	Q15513	63 aa		4.17	□□□□□ -1.74
RTN4-215	ENST00000491592	TNXA	Q16473	311 aa		4.17	□□□□□ -1.74
RTN4-215	ENST00000491592	LRRC26	Q2I0M4	334 aa		4.17	□□□□□ -1.74
RTN4-215	ENST00000491592	GGTA1P	Q4G0N0	100 aa		4.17	□□□□□ -1.74
RTN4-215	ENST00000491592	ACSF3	Q4G176	576 aa	Predicted RBP	4.17	□□□□□ -1.74
RTN4-215	ENST00000491592	SLC22A6	Q4U2R8	563 aa		4.17	□□□□□ -1.74
RTN4-215	ENST00000491592	PYCR3	Q53H96	274 aa		4.17	□□□□□ -1.74
RTN4-215	ENST00000491592	SYT14P1	Q58G82	188 aa		4.17	□□□□□ -1.74
RTN4-215	ENST00000491592	TEX30	Q5JUR7	227 aa		4.17	□□□□□ -1.74

Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms