RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 SAC3D1A6NKF1 404 aa12.68□□□□□ -0.38
USP4-212ENST00000486549 SMAD7O15105 426 aaKnown RBP12.68□□□□□ -0.38
USP4-212ENST00000486549 SYNGR3O43761 229 aa12.68□□□□□ -0.38
USP4-212ENST00000486549 MITFO75030 526 aaPredicted RBP12.68□□□□□ -0.38
USP4-212ENST00000486549 ABHD16AO95870 558 aa12.68□□□□□ -0.38
USP4-212ENST00000486549 CLPTM1O96005 669 aa12.68□□□□□ -0.38
USP4-212ENST00000486549 COX5BP10606 129 aa12.68□□□□□ -0.38
USP4-212ENST00000486549 RPS27P42677 84 aaKnown RBP12.68□□□□□ -0.38
USP4-212ENST00000486549 ALDH3B1P43353 468 aa12.68□□□□□ -0.38
USP4-212ENST00000486549 PPOXP50336 477 aa12.68□□□□□ -0.38
USP4-212ENST00000486549 SLC25A1P53007 311 aa12.68□□□□□ -0.38
USP4-212ENST00000486549 MAD2L1BPQ15013 274 aaPredicted RBP12.68□□□□□ -0.38
USP4-212ENST00000486549 ALKBH6Q3KRA9 238 aa12.68□□□□□ -0.38
USP4-212ENST00000486549 RFPL4BQ6ZWI9 263 aa12.68□□□□□ -0.38
USP4-212ENST00000486549 ZCCHC24Q8N2G6 241 aaKnown RBP12.68□□□□□ -0.38
USP4-212ENST00000486549 GJC3Q8NFK1 279 aa12.68□□□□□ -0.38
USP4-212ENST00000486549 OR2AJ1Q8NGZ0 328 aa12.68□□□□□ -0.38
USP4-212ENST00000486549 OR1F12Q8NHA8 337 aa12.68□□□□□ -0.38
USP4-212ENST00000486549 SYNPRQ8TBG9 265 aa12.68□□□□□ -0.38
USP4-212ENST00000486549 DNAJC9Q8WXX5 260 aa12.68□□□□□ -0.38
USP4-212ENST00000486549 PLEKHA8Q96JA3 519 aa12.68□□□□□ -0.38
USP4-212ENST00000486549 C4orf45Q96LM5 186 aa12.68□□□□□ -0.38
USP4-212ENST00000486549 HCAR1Q9BXC0 346 aa12.68□□□□□ -0.38
USP4-212ENST00000486549 NMNAT2Q9BZQ4 307 aa12.68□□□□□ -0.38
USP4-212ENST00000486549 TPK1Q9H3S4 243 aa12.68□□□□□ -0.38
USP4-212ENST00000486549 GRIP1Q9Y3R0 1128 aa12.68□□□□□ -0.38
USP4-212ENST00000486549 ZNF469Q96JG9 3925 aaPredicted RBP12.67□□□□□ -0.38
USP4-212ENST00000486549 OR6C6A6NF89 314 aa12.67□□□□□ -0.38
USP4-212ENST00000486549 H3BNX3 289 aa12.67□□□□□ -0.38
USP4-212ENST00000486549 H7C1Q1 480 aa12.67□□□□□ -0.38
USP4-212ENST00000486549 M0R233 179 aa12.67□□□□□ -0.38
USP4-212ENST00000486549 SURF4O15260 269 aa12.67□□□□□ -0.38
USP4-212ENST00000486549 NGFP01138 241 aa12.67□□□□□ -0.38
USP4-212ENST00000486549 ADRA2AP08913 450 aa12.67□□□□□ -0.38
USP4-212ENST00000486549 DBHP09172 617 aa12.67□□□□□ -0.38
USP4-212ENST00000486549 PAICSP22234 425 aaKnown RBP12.67□□□□□ -0.38
USP4-212ENST00000486549 FMO3P31513 532 aa12.67□□□□□ -0.38
USP4-212ENST00000486549 GGT2P36268 569 aa12.67□□□□□ -0.38
USP4-212ENST00000486549 EFNA4P52798 201 aa12.67□□□□□ -0.38
USP4-212ENST00000486549 CRISP1P54107 249 aa12.67□□□□□ -0.38
USP4-212ENST00000486549 KLF3P57682 345 aaPredicted RBP12.67□□□□□ -0.38
USP4-212ENST00000486549 SELENOVP59797 346 aa12.67□□□□□ -0.38
USP4-212ENST00000486549 CDK5Q00535 292 aa12.67□□□□□ -0.38
USP4-212ENST00000486549 NKPD1Q17RQ9 610 aa12.67□□□□□ -0.38
USP4-212ENST00000486549 ELFN2Q5R3F8 820 aa12.67□□□□□ -0.38
USP4-212ENST00000486549 SLC18B1Q6NT16 456 aa12.67□□□□□ -0.38
USP4-212ENST00000486549 ARL9Q6T311 187 aa12.67□□□□□ -0.38
USP4-212ENST00000486549 CLEC9AQ6UXN8 241 aa12.67□□□□□ -0.38
USP4-212ENST00000486549 CFAP77Q6ZQR2 320 aa12.67□□□□□ -0.38
USP4-212ENST00000486549 ZNF525Q8N782 197 aa12.67□□□□□ -0.38
USP4-212ENST00000486549 ZNF511Q8NB15 262 aa12.67□□□□□ -0.38
USP4-212ENST00000486549 SLC25A40Q8TBP6 338 aa12.67□□□□□ -0.38
USP4-212ENST00000486549 CENPNQ96H22 339 aaPredicted RBP12.67□□□□□ -0.38
USP4-212ENST00000486549 COX4I2Q96KJ9 171 aa12.67□□□□□ -0.38
USP4-212ENST00000486549 PITX2Q99697 317 aa12.67□□□□□ -0.38
USP4-212ENST00000486549 PKP2Q99959 881 aa12.67□□□□□ -0.38
USP4-212ENST00000486549 TEX12Q9BXU0 123 aa12.67□□□□□ -0.38
USP4-212ENST00000486549 GABARAPL1Q9H0R8 117 aa12.67□□□□□ -0.38
USP4-212ENST00000486549 OR51V1Q9H2C8 321 aa12.67□□□□□ -0.38
USP4-212ENST00000486549 WDR76Q9H967 626 aa12.67□□□□□ -0.38
USP4-212ENST00000486549 ELOVL3Q9HB03 270 aa12.67□□□□□ -0.38
USP4-212ENST00000486549 SLC25A19Q9HC21 320 aa12.67□□□□□ -0.38
USP4-212ENST00000486549 OAZ3Q9UMX2 235 aa12.67□□□□□ -0.38
USP4-212ENST00000486549 COMMD3-BMI1R4GMX3 469 aa12.67□□□□□ -0.38
USP4-212ENST00000486549 PRR23D1E9PI22 279 aaPredicted RBP12.66□□□□□ -0.38
USP4-212ENST00000486549 HMGN1P05114 100 aa12.66□□□□□ -0.38
USP4-212ENST00000486549 HEXAP06865 529 aa12.66□□□□□ -0.38
USP4-212ENST00000486549 SPARCP09486 303 aa12.66□□□□□ -0.38
USP4-212ENST00000486549 PRR23D2P0DMB1 279 aaPredicted RBP12.66□□□□□ -0.38
USP4-212ENST00000486549 GCH1P30793 250 aa12.66□□□□□ -0.38
USP4-212ENST00000486549 EVX1P49640 407 aa12.66□□□□□ -0.38
USP4-212ENST00000486549 PPP1CBP62140 327 aa12.66□□□□□ -0.38
USP4-212ENST00000486549 HIST1H3AP68431 136 aa12.66□□□□□ -0.38
USP4-212ENST00000486549 TNK1Q13470 666 aa12.66□□□□□ -0.38
USP4-212ENST00000486549 CARTPTQ16568 116 aa12.66□□□□□ -0.38
USP4-212ENST00000486549 HIST2H3PS2Q5TEC6 136 aa12.66□□□□□ -0.38
USP4-212ENST00000486549 ZFP1Q6P2D0 407 aa12.66□□□□□ -0.38
USP4-212ENST00000486549 PLBD1Q6P4A8 553 aa12.66□□□□□ -0.38
USP4-212ENST00000486549 CLEC2AQ6UVW9 174 aa12.66□□□□□ -0.38
USP4-212ENST00000486549 UNQ6126/PRO20091Q6UXV3 157 aa12.66□□□□□ -0.38
USP4-212ENST00000486549 HIST2H3AQ71DI3 136 aa12.66□□□□□ -0.38
USP4-212ENST00000486549 CIARTQ8N365 385 aaPredicted RBP12.66□□□□□ -0.38
USP4-212ENST00000486549 PARP8Q8N3A8 854 aa12.66□□□□□ -0.38
USP4-212ENST00000486549 OR2J1Q9GZK6 312 aa12.66□□□□□ -0.38
USP4-212ENST00000486549 HDHD2Q9H0R4 259 aa12.66□□□□□ -0.38
USP4-212ENST00000486549 RAB1BQ9H0U4 201 aa12.66□□□□□ -0.38
USP4-212ENST00000486549 TVP23BQ9NYZ1 205 aa12.66□□□□□ -0.38
USP4-212ENST00000486549 TAAR3PQ9P1P4 343 aa12.66□□□□□ -0.38
USP4-212ENST00000486549 CYB5R1Q9UHQ9 305 aa12.66□□□□□ -0.38
USP4-212ENST00000486549 KCNG2Q9UJ96 466 aa12.66□□□□□ -0.38
USP4-212ENST00000486549 FBXO9Q9UK97 447 aaPredicted RBP12.66□□□□□ -0.38
USP4-212ENST00000486549 CHD3Q12873 2000 aaKnown RBP12.66□□□□□ -0.38
USP4-212ENST00000486549 F12P00748 615 aaPredicted RBP12.65□□□□□ -0.38
USP4-212ENST00000486549 ERCC1P07992 297 aaPredicted RBP12.65□□□□□ -0.38
USP4-212ENST00000486549 NAT2P11245 290 aa12.65□□□□□ -0.38
USP4-212ENST00000486549 PSKH1P11801 424 aa12.65□□□□□ -0.38
USP4-212ENST00000486549 ZNF250P15622 560 aa12.65□□□□□ -0.38
USP4-212ENST00000486549 IGFBP5P24593 272 aa12.65□□□□□ -0.38
USP4-212ENST00000486549 MPV17P39210 176 aa12.65□□□□□ -0.38
USP4-212ENST00000486549 ENTPD1P49961 510 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms