RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 TBPL1P62380 186 aa12.19□□□□□ -0.46
USP40-208ENST00000450966 NTHL1P78549 312 aa12.19□□□□□ -0.46
USP40-208ENST00000450966 FABP5Q01469 135 aa12.19□□□□□ -0.46
USP40-208ENST00000450966 LINC00303Q3SY05 128 aa12.19□□□□□ -0.46
USP40-208ENST00000450966 SNX22Q96L94 193 aa12.19□□□□□ -0.46
USP40-208ENST00000450966 CBLCQ9ULV8 474 aa12.19□□□□□ -0.46
USP40-208ENST00000450966 CXorf65A6NEN9 183 aa12.18□□□□□ -0.46
USP40-208ENST00000450966 ZNF891A8MT65 544 aaPredicted RBP12.18□□□□□ -0.46
USP40-208ENST00000450966 FCER1GP30273 86 aa12.18□□□□□ -0.46
USP40-208ENST00000450966 HIST3H3Q16695 136 aa12.18□□□□□ -0.46
USP40-208ENST00000450966 PABPC1L2AQ5JQF8 200 aa12.18□□□□□ -0.46
USP40-208ENST00000450966 TMEM240Q5SV17 173 aa12.18□□□□□ -0.46
USP40-208ENST00000450966 ZNF626Q68DY1 528 aa12.18□□□□□ -0.46
USP40-208ENST00000450966 GPR137CQ8N3F9 429 aa12.18□□□□□ -0.46
USP40-208ENST00000450966 DNAJA3Q96EY1 480 aa12.18□□□□□ -0.46
USP40-208ENST00000450966 PLK3Q9H4B4 646 aa12.18□□□□□ -0.46
USP40-208ENST00000450966 Q9N2K0 584 aa12.18□□□□□ -0.46
USP40-208ENST00000450966 A0A087WV62 115 aa12.18□□□□□ -0.46
USP40-208ENST00000450966 ARG1P05089 322 aa12.18□□□□□ -0.46
USP40-208ENST00000450966 TBPP20226 339 aa12.18□□□□□ -0.46
USP40-208ENST00000450966 PMCHP20382 165 aa12.18□□□□□ -0.46
USP40-208ENST00000450966 CD70P32970 193 aa12.18□□□□□ -0.46
USP40-208ENST00000450966 OPRD1P41143 372 aa12.18□□□□□ -0.46
USP40-208ENST00000450966 ARSDP51689 593 aa12.18□□□□□ -0.46
USP40-208ENST00000450966 PLP1P60201 277 aa12.18□□□□□ -0.46
USP40-208ENST00000450966 RPS18P62269 152 aaKnown RBP12.18□□□□□ -0.46
USP40-208ENST00000450966 SNRPNP63162 240 aaKnown RBP12.18□□□□□ -0.46
USP40-208ENST00000450966 ZP2Q05996 745 aa12.18□□□□□ -0.46
USP40-208ENST00000450966 PIP5KL1Q5T9C9 394 aa12.18□□□□□ -0.46
USP40-208ENST00000450966 NXPE4Q6UWF7 544 aa12.18□□□□□ -0.46
USP40-208ENST00000450966 ANGPTL5Q86XS5 388 aa12.18□□□□□ -0.46
USP40-208ENST00000450966 SDR9C7Q8NEX9 313 aa12.18□□□□□ -0.46
USP40-208ENST00000450966 HUS1BQ8NHY5 278 aa12.18□□□□□ -0.46
USP40-208ENST00000450966 THAP3Q8WTV1 239 aaPredicted RBP12.18□□□□□ -0.46
USP40-208ENST00000450966 ASB16Q96NS5 453 aa12.18□□□□□ -0.46
USP40-208ENST00000450966 C1QTNF6Q9BXI9 259 aa12.18□□□□□ -0.46
USP40-208ENST00000450966 C2orf42Q9NWW7 574 aa12.18□□□□□ -0.46
USP40-208ENST00000450966 LPAR3Q9UBY5 353 aa12.18□□□□□ -0.46
USP40-208ENST00000450966 RAB22AQ9UL26 194 aa12.18□□□□□ -0.46
USP40-208ENST00000450966 LHX6Q9UPM6 363 aa12.18□□□□□ -0.46
USP40-208ENST00000450966 SOD1P00441 154 aa12.18□□□□□ -0.46
USP40-208ENST00000450966 FASLGP48023 281 aa12.18□□□□□ -0.46
USP40-208ENST00000450966 CSNK1EP49674 416 aaKnown RBP12.18□□□□□ -0.46
USP40-208ENST00000450966 CTXN1P60606 82 aa12.18□□□□□ -0.46
USP40-208ENST00000450966 UBE2NP61088 152 aaKnown RBP12.18□□□□□ -0.46
USP40-208ENST00000450966 SYT14P1Q58G82 188 aa12.18□□□□□ -0.46
USP40-208ENST00000450966 MARCH8Q5T0T0 291 aa12.18□□□□□ -0.46
USP40-208ENST00000450966 NHLRC2Q8NBF2 726 aa12.18□□□□□ -0.46
USP40-208ENST00000450966 OR10A7Q8NGE5 316 aa12.18□□□□□ -0.46
USP40-208ENST00000450966 HHIPQ96QV1 700 aa12.18□□□□□ -0.46
USP40-208ENST00000450966 ATG101Q9BSB4 218 aa12.18□□□□□ -0.46
USP40-208ENST00000450966 IER3IP1Q9Y5U9 82 aa12.18□□□□□ -0.46
USP40-208ENST00000450966 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP12.18□□□□□ -0.46
USP40-208ENST00000450966 ZAR1LA6NP61 321 aa12.18□□□□□ -0.46
USP40-208ENST00000450966 ZNF195O14628 629 aa12.18□□□□□ -0.46
USP40-208ENST00000450966 PPIAP62937 165 aaKnown RBP12.18□□□□□ -0.46
USP40-208ENST00000450966 NKAIN2Q5VXU1 208 aa12.18□□□□□ -0.46
USP40-208ENST00000450966 CARFQ8N187 725 aa12.18□□□□□ -0.46
USP40-208ENST00000450966 ZFP62Q8NB50 900 aaPredicted RBP12.18□□□□□ -0.46
USP40-208ENST00000450966 RPUSD4Q96CM3 377 aaKnown RBP12.18□□□□□ -0.46
USP40-208ENST00000450966 CTDSP1Q9GZU7 261 aa12.18□□□□□ -0.46
USP40-208ENST00000450966 ICAM2P13598 275 aa12.17□□□□□ -0.46
USP40-208ENST00000450966 PRAMEF8Q5VWM4 474 aa12.17□□□□□ -0.46
USP40-208ENST00000450966 PRAMEF7Q5VXH5 474 aa12.17□□□□□ -0.46
USP40-208ENST00000450966 DHRS11Q6UWP2 260 aa12.17□□□□□ -0.46
USP40-208ENST00000450966 Q6ZSR6 202 aa12.17□□□□□ -0.46
USP40-208ENST00000450966 PRSS35Q8N3Z0 413 aa12.17□□□□□ -0.46
USP40-208ENST00000450966 OR4F5Q8NH21 305 aa12.17□□□□□ -0.46
USP40-208ENST00000450966 STARD4Q96DR4 205 aa12.17□□□□□ -0.46
USP40-208ENST00000450966 OR4F4Q96R69 305 aa12.17□□□□□ -0.46
USP40-208ENST00000450966 CLCF1Q9UBD9 225 aa12.17□□□□□ -0.46
USP40-208ENST00000450966 A0A0J9YY10 115 aa12.17□□□□□ -0.46
USP40-208ENST00000450966 NUDT21O43809 227 aaKnown RBP12.17□□□□□ -0.46
USP40-208ENST00000450966 OR2J2O76002 312 aa12.17□□□□□ -0.46
USP40-208ENST00000450966 ZNF728P0DKX0 622 aa12.17□□□□□ -0.46
USP40-208ENST00000450966 POU3F4P49335 361 aa12.17□□□□□ -0.46
USP40-208ENST00000450966 HLA-DRB3P79483 266 aa12.17□□□□□ -0.46
USP40-208ENST00000450966 OR52B4Q8NGK2 314 aa12.17□□□□□ -0.46
USP40-208ENST00000450966 TMEM174Q8WUU8 243 aa12.17□□□□□ -0.46
USP40-208ENST00000450966 TSACCQ96A04 125 aaPredicted RBP12.17□□□□□ -0.46
USP40-208ENST00000450966 OR52A1Q9UKL2 312 aa12.17□□□□□ -0.46
USP40-208ENST00000450966 B3GALT5Q9Y2C3 310 aa12.17□□□□□ -0.46
USP40-208ENST00000450966 NRAPQ86VF7 1730 aa12.17□□□□□ -0.46
USP40-208ENST00000450966 TMEM265A0A087WTH1 108 aa12.17□□□□□ -0.46
USP40-208ENST00000450966 SOX15O60248 233 aa12.17□□□□□ -0.46
USP40-208ENST00000450966 CDC34P49427 236 aaPredicted RBP12.17□□□□□ -0.46
USP40-208ENST00000450966 OTUD1Q5VV17 481 aaPredicted RBP12.17□□□□□ -0.46
USP40-208ENST00000450966 FAHD1Q6P587 224 aa12.17□□□□□ -0.46
USP40-208ENST00000450966 FIGLAQ6QHK4 219 aa12.17□□□□□ -0.46
USP40-208ENST00000450966 RNF113BQ8IZP6 322 aaKnown RBP12.17□□□□□ -0.46
USP40-208ENST00000450966 CMTM4Q8IZR5 234 aa12.17□□□□□ -0.46
USP40-208ENST00000450966 CLEC1AQ8NC01 280 aa12.17□□□□□ -0.46
USP40-208ENST00000450966 NANOS1Q8WY41 292 aaKnown RBP12.17□□□□□ -0.46
USP40-208ENST00000450966 PAAF1Q9BRP4 392 aa12.17□□□□□ -0.46
USP40-208ENST00000450966 DSCR3O14972 297 aa12.17□□□□□ -0.46
USP40-208ENST00000450966 ARSAP15289 507 aa12.17□□□□□ -0.46
USP40-208ENST00000450966 ELAVL4P26378 380 aaKnown RBP12.17□□□□□ -0.46
USP40-208ENST00000450966 FGF9P31371 208 aaPredicted RBP12.17□□□□□ -0.46
USP40-208ENST00000450966 BAXQ07812 192 aa12.17□□□□□ -0.46
USP40-208ENST00000450966 FAM69BQ5VUD6 431 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms