RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 PRAMEF8Q5VWM4 474 aa5.52□□□□□ -1.53
USP40-202ENST00000409945 PRAMEF7Q5VXH5 474 aa5.52□□□□□ -1.53
USP40-202ENST00000409945 CRYBG3Q68DQ2 2970 aa5.52□□□□□ -1.53
USP40-202ENST00000409945 RAB12Q6IQ22 244 aa5.52□□□□□ -1.53
USP40-202ENST00000409945 ZNF550Q7Z398 422 aa5.52□□□□□ -1.53
USP40-202ENST00000409945 GRINAQ7Z429 371 aa5.52□□□□□ -1.53
USP40-202ENST00000409945 GCNT2Q8N0V5 402 aa5.52□□□□□ -1.53
USP40-202ENST00000409945 C9orf106Q8NAJ2 232 aa5.52□□□□□ -1.53
USP40-202ENST00000409945 ATP6V1C2Q8NEY4 427 aa5.52□□□□□ -1.53
USP40-202ENST00000409945 OR10D3Q8NH80 312 aa5.52□□□□□ -1.53
USP40-202ENST00000409945 GPR119Q8TDV5 335 aa5.52□□□□□ -1.53
USP40-202ENST00000409945 SLC26A7Q8TE54 656 aa5.52□□□□□ -1.53
USP40-202ENST00000409945 ZFP90Q8TF47 636 aa5.52□□□□□ -1.53
USP40-202ENST00000409945 OSTF1Q92882 214 aa5.52□□□□□ -1.53
USP40-202ENST00000409945 CCDC124Q96CT7 223 aaKnown RBP5.52□□□□□ -1.53
USP40-202ENST00000409945 DDIT4LQ96D03 193 aa5.52□□□□□ -1.53
USP40-202ENST00000409945 RCN3Q96D15 328 aa5.52□□□□□ -1.53
USP40-202ENST00000409945 ZNF607Q96SK3 696 aa5.52□□□□□ -1.53
USP40-202ENST00000409945 ZNF184Q99676 751 aaPredicted RBP5.52□□□□□ -1.53
USP40-202ENST00000409945 SH3GL1Q99961 368 aa5.52□□□□□ -1.53
USP40-202ENST00000409945 INPP5KQ9BT40 448 aa5.52□□□□□ -1.53
USP40-202ENST00000409945 MMP27Q9H306 513 aa5.52□□□□□ -1.53
USP40-202ENST00000409945 TMEM185BQ9H7F4 350 aa5.52□□□□□ -1.53
USP40-202ENST00000409945 MCCC2Q9HCC0 563 aa5.52□□□□□ -1.53
USP40-202ENST00000409945 KLHL28Q9NXS3 571 aa5.52□□□□□ -1.53
USP40-202ENST00000409945 ZNF226Q9NYT6 803 aa5.52□□□□□ -1.53
USP40-202ENST00000409945 SELENONQ9NZV5 590 aa5.52□□□□□ -1.53
USP40-202ENST00000409945 RPS6KB2Q9UBS0 482 aa5.52□□□□□ -1.53
USP40-202ENST00000409945 MALT1Q9UDY8 824 aa5.52□□□□□ -1.53
USP40-202ENST00000409945 A0A1W2PNV4 684 aa5.52□□□□□ -1.53
USP40-202ENST00000409945 A0A1W2PP18 115 aa5.52□□□□□ -1.53
USP40-202ENST00000409945 PRORSD1PA6NEY8 169 aa5.52□□□□□ -1.53
USP40-202ENST00000409945 TNFSF11O14788 317 aa5.52□□□□□ -1.53
USP40-202ENST00000409945 CXCL13O43927 109 aa5.52□□□□□ -1.53
USP40-202ENST00000409945 SERPINB7O75635 380 aa5.52□□□□□ -1.53
USP40-202ENST00000409945 NTN1O95631 604 aa5.52□□□□□ -1.53
USP40-202ENST00000409945 BCHEP06276 602 aa5.52□□□□□ -1.53
USP40-202ENST00000409945 CXCR1P25024 350 aa5.52□□□□□ -1.53
USP40-202ENST00000409945 AZGP1P25311 298 aaKnown RBP5.52□□□□□ -1.53
USP40-202ENST00000409945 CDKN2CP42773 168 aa5.52□□□□□ -1.53
USP40-202ENST00000409945 SIRPAP78324 504 aa5.52□□□□□ -1.53
USP40-202ENST00000409945 TFF3Q07654 80 aa5.52□□□□□ -1.53
USP40-202ENST00000409945 SKP2Q13309 424 aa5.52□□□□□ -1.53
USP40-202ENST00000409945 SNAPC1Q16533 368 aa5.52□□□□□ -1.53
USP40-202ENST00000409945 SYPL1Q16563 259 aa5.52□□□□□ -1.53
USP40-202ENST00000409945 TMEM44Q2T9K0 475 aa5.52□□□□□ -1.53
USP40-202ENST00000409945 TMEM176BQ3YBM2 270 aaPredicted RBP5.52□□□□□ -1.53
USP40-202ENST00000409945 SLC25A53Q5H9E4 307 aa5.52□□□□□ -1.53
USP40-202ENST00000409945 GCNT6Q5T4J0 391 aa5.52□□□□□ -1.53
USP40-202ENST00000409945 CBLN3Q6UW01 205 aa5.52□□□□□ -1.53
USP40-202ENST00000409945 HACD2Q6Y1H2 254 aa5.52□□□□□ -1.53
USP40-202ENST00000409945 FRRS1Q6ZNA5 592 aa5.52□□□□□ -1.53
USP40-202ENST00000409945 RBPMS2Q6ZRY4 209 aaKnown RBP5.52□□□□□ -1.53
USP40-202ENST00000409945 MEPCEQ7L2J0 689 aaKnown RBP5.52□□□□□ -1.53
USP40-202ENST00000409945 DHDDSQ86SQ9 333 aa5.52□□□□□ -1.53
USP40-202ENST00000409945 SLC30A8Q8IWU4 369 aa5.52□□□□□ -1.53
USP40-202ENST00000409945 INTS1Q8N201 2190 aaKnown RBP5.52□□□□□ -1.53
USP40-202ENST00000409945 OR9I1Q8NGQ6 314 aa5.52□□□□□ -1.53
USP40-202ENST00000409945 OR6K3Q8NGY3 331 aa5.52□□□□□ -1.53
USP40-202ENST00000409945 OR52P1PQ8NH57 321 aa5.52□□□□□ -1.53
USP40-202ENST00000409945 FNDC9Q8TBE3 224 aa5.52□□□□□ -1.53
USP40-202ENST00000409945 GTF2H4Q92759 462 aa5.52□□□□□ -1.53
USP40-202ENST00000409945 PIGTQ969N2 578 aa5.52□□□□□ -1.53
USP40-202ENST00000409945 OR5B2Q96R09 309 aa5.52□□□□□ -1.53
USP40-202ENST00000409945 ABHD6Q9BV23 337 aa5.52□□□□□ -1.53
USP40-202ENST00000409945 EVA1AQ9H8M9 152 aa5.52□□□□□ -1.53
USP40-202ENST00000409945 RNF122Q9H9V4 155 aa5.52□□□□□ -1.53
USP40-202ENST00000409945 CHMP1AQ9HD42 196 aaPredicted RBP5.52□□□□□ -1.53
USP40-202ENST00000409945 ACER3Q9NUN7 267 aa5.52□□□□□ -1.53
USP40-202ENST00000409945 ZNF224Q9NZL3 707 aa5.52□□□□□ -1.53
USP40-202ENST00000409945 EMC3Q9P0I2 261 aa5.52□□□□□ -1.53
USP40-202ENST00000409945 RCC2Q9P258 522 aaKnown RBP5.52□□□□□ -1.53
USP40-202ENST00000409945 CELSR2Q9HCU4 2923 aa5.51□□□□□ -1.53
USP40-202ENST00000409945 PKDREJQ9NTG1 2253 aa5.51□□□□□ -1.53
USP40-202ENST00000409945 C19orf84I3L1E1 186 aa5.51□□□□□ -1.53
USP40-202ENST00000409945 SULT2B1O00204 365 aa5.51□□□□□ -1.53
USP40-202ENST00000409945 XRCC3O43542 346 aa5.51□□□□□ -1.53
USP40-202ENST00000409945 EIF1BO60739 113 aaKnown RBP5.51□□□□□ -1.53
USP40-202ENST00000409945 PPP1R3DO95685 299 aa5.51□□□□□ -1.53
USP40-202ENST00000409945 TGM6O95932 706 aa5.51□□□□□ -1.53
USP40-202ENST00000409945 POU2F1P14859 743 aa5.51□□□□□ -1.53
USP40-202ENST00000409945 GTF2E2P29084 291 aaKnown RBP5.51□□□□□ -1.53
USP40-202ENST00000409945 POLR2HP52434 150 aaKnown RBP5.51□□□□□ -1.53
USP40-202ENST00000409945 SUCLG1P53597 346 aaKnown RBP5.51□□□□□ -1.53
USP40-202ENST00000409945 FLOT2Q14254 428 aa5.51□□□□□ -1.53
USP40-202ENST00000409945 RGNQ15493 299 aa5.51□□□□□ -1.53
USP40-202ENST00000409945 CYP51A1Q16850 503 aa5.51□□□□□ -1.53
USP40-202ENST00000409945 MAJINQ3KP22 176 aa5.51□□□□□ -1.53
USP40-202ENST00000409945 COQ5Q5HYK3 327 aa5.51□□□□□ -1.53
USP40-202ENST00000409945 ZNF311Q5JNZ3 666 aa5.51□□□□□ -1.53
USP40-202ENST00000409945 AP1ARQ63HQ0 302 aa5.51□□□□□ -1.53
USP40-202ENST00000409945 REEP3Q6NUK4 255 aa5.51□□□□□ -1.53
USP40-202ENST00000409945 FCRLAQ7L513 359 aa5.51□□□□□ -1.53
USP40-202ENST00000409945 GCSAMQ8N6F7 178 aa5.51□□□□□ -1.53
USP40-202ENST00000409945 ANKFN1Q8N957 763 aa5.51□□□□□ -1.53
USP40-202ENST00000409945 RELL2Q8NC24 303 aaPredicted RBP5.51□□□□□ -1.53
USP40-202ENST00000409945 OR10S1Q8NGN2 331 aa5.51□□□□□ -1.53
USP40-202ENST00000409945 FIG4Q92562 907 aa5.51□□□□□ -1.53
USP40-202ENST00000409945 TMEM19Q96HH6 336 aa5.51□□□□□ -1.53
USP40-202ENST00000409945 NAA11Q9BSU3 229 aaPredicted RBP5.51□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms