RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 MEIOBQ8N635 442 aa12.16□□□□□ -0.46
PTPRF-202ENST00000372405 FNDC9Q8TBE3 224 aa12.16□□□□□ -0.46
PTPRF-202ENST00000372405 TMEM106AQ96A25 262 aa12.16□□□□□ -0.46
PTPRF-202ENST00000372405 PNPLA2Q96AD5 504 aa12.16□□□□□ -0.46
PTPRF-202ENST00000372405 DIRAS2Q96HU8 199 aa12.16□□□□□ -0.46
PTPRF-202ENST00000372405 ALKBH3Q96Q83 286 aaPredicted RBP12.16□□□□□ -0.46
PTPRF-202ENST00000372405 ABCB10Q9NRK6 738 aa12.16□□□□□ -0.46
PTPRF-202ENST00000372405 OR52A1Q9UKL2 312 aa12.16□□□□□ -0.46
PTPRF-202ENST00000372405 BOD1L1Q8NFC6 3051 aa12.16□□□□□ -0.46
PTPRF-202ENST00000372405 CEP295Q9C0D2 2601 aa12.15□□□□□ -0.46
PTPRF-202ENST00000372405 NOTOA8MTQ0 251 aa12.15□□□□□ -0.46
PTPRF-202ENST00000372405 ZNF878C9JN71 531 aa12.15□□□□□ -0.46
PTPRF-202ENST00000372405 LOC110117498-PIK3R3F6TDL0 507 aa12.15□□□□□ -0.46
PTPRF-202ENST00000372405 SLC43A1O75387 559 aa12.15□□□□□ -0.46
PTPRF-202ENST00000372405 ACTL6AO96019 429 aa12.15□□□□□ -0.46
PTPRF-202ENST00000372405 MADCAM1Q13477 382 aa12.15□□□□□ -0.46
PTPRF-202ENST00000372405 STEAP3Q658P3 488 aa12.15□□□□□ -0.46
PTPRF-202ENST00000372405 STAC2Q6ZMT1 411 aa12.15□□□□□ -0.46
PTPRF-202ENST00000372405 LRRTM1Q86UE6 522 aa12.15□□□□□ -0.46
PTPRF-202ENST00000372405 HIST2H2ABQ8IUE6 130 aaPredicted RBP12.15□□□□□ -0.46
PTPRF-202ENST00000372405 LYSMD2Q8IV50 215 aa12.15□□□□□ -0.46
PTPRF-202ENST00000372405 OR2AJ1Q8NGZ0 328 aa12.15□□□□□ -0.46
PTPRF-202ENST00000372405 ACOT12Q8WYK0 555 aa12.15□□□□□ -0.46
PTPRF-202ENST00000372405 KCTD12Q96CX2 325 aaKnown RBP12.15□□□□□ -0.46
PTPRF-202ENST00000372405 SOSTQ9BQB4 213 aa12.15□□□□□ -0.46
PTPRF-202ENST00000372405 SRRQ9GZT4 340 aa12.15□□□□□ -0.46
PTPRF-202ENST00000372405 CRLF2Q9HC73 371 aa12.15□□□□□ -0.46
PTPRF-202ENST00000372405 WASF3Q9UPY6 502 aa12.15□□□□□ -0.46
PTPRF-202ENST00000372405 TRGV5A0A0B4J1U4 118 aa12.14□□□□□ -0.47
PTPRF-202ENST00000372405 MAPK3P27361 379 aaPredicted RBP12.14□□□□□ -0.47
PTPRF-202ENST00000372405 DCTDP32321 178 aa12.14□□□□□ -0.47
PTPRF-202ENST00000372405 MZT2AQ6P582 158 aa12.14□□□□□ -0.47
PTPRF-202ENST00000372405 CNIH2Q6PI25 160 aa12.14□□□□□ -0.47
PTPRF-202ENST00000372405 RHOUQ7L0Q8 258 aa12.14□□□□□ -0.47
PTPRF-202ENST00000372405 LRRC18Q8N456 261 aa12.14□□□□□ -0.47
PTPRF-202ENST00000372405 CHPT1Q8WUD6 406 aa12.14□□□□□ -0.47
PTPRF-202ENST00000372405 ASB5Q8WWX0 329 aa12.14□□□□□ -0.47
PTPRF-202ENST00000372405 TMEM45BQ96B21 275 aa12.14□□□□□ -0.47
PTPRF-202ENST00000372405 WDYHV1Q96HA8 205 aa12.14□□□□□ -0.47
PTPRF-202ENST00000372405 BRD7Q9NPI1 651 aa12.14□□□□□ -0.47
PTPRF-202ENST00000372405 TTRP02766 147 aa12.14□□□□□ -0.47
PTPRF-202ENST00000372405 ISG15P05161 165 aa12.14□□□□□ -0.47
PTPRF-202ENST00000372405 ZNF12P17014 697 aa12.14□□□□□ -0.47
PTPRF-202ENST00000372405 ELK1P19419 428 aa12.14□□□□□ -0.47
PTPRF-202ENST00000372405 AZGP1P25311 298 aaKnown RBP12.14□□□□□ -0.47
PTPRF-202ENST00000372405 APEX1P27695 318 aaKnown RBP12.14□□□□□ -0.47
PTPRF-202ENST00000372405 EVX1P49640 407 aa12.14□□□□□ -0.47
PTPRF-202ENST00000372405 MRPS34P82930 218 aaKnown RBP12.14□□□□□ -0.47
PTPRF-202ENST00000372405 ZNF181Q2M3W8 571 aa12.14□□□□□ -0.47
PTPRF-202ENST00000372405 RGS21Q2M5E4 152 aa12.14□□□□□ -0.47
PTPRF-202ENST00000372405 Q6ZNX1 250 aa12.14□□□□□ -0.47
PTPRF-202ENST00000372405 DCDC5Q6ZRR9 648 aa12.14□□□□□ -0.47
PTPRF-202ENST00000372405 CENPSQ8N2Z9 138 aa12.14□□□□□ -0.47
PTPRF-202ENST00000372405 OR5H6Q8NGV6 325 aa12.14□□□□□ -0.47
PTPRF-202ENST00000372405 FBXO17Q96EF6 278 aa12.14□□□□□ -0.47
PTPRF-202ENST00000372405 SCNM1Q9BWG6 230 aa12.14□□□□□ -0.47
PTPRF-202ENST00000372405 LDAHQ9H6V9 325 aa12.14□□□□□ -0.47
PTPRF-202ENST00000372405 DDX28Q9NUL7 540 aaKnown RBP12.14□□□□□ -0.47
PTPRF-202ENST00000372405 C14orf119Q9NWQ9 140 aa12.14□□□□□ -0.47
PTPRF-202ENST00000372405 ANKRD11Q6UB99 2663 aaPredicted RBP12.14□□□□□ -0.47
PTPRF-202ENST00000372405 TRAV17A0A0B4J275 112 aa12.13□□□□□ -0.47
PTPRF-202ENST00000372405 LOC107986453A0A1B0GWG9 222 aa12.13□□□□□ -0.47
PTPRF-202ENST00000372405 FABP12A6NFH5 140 aa12.13□□□□□ -0.47
PTPRF-202ENST00000372405 MAGEB3O15480 346 aa12.13□□□□□ -0.47
PTPRF-202ENST00000372405 LMX1BO60663 402 aa12.13□□□□□ -0.47
PTPRF-202ENST00000372405 RAF1P04049 648 aa12.13□□□□□ -0.47
PTPRF-202ENST00000372405 EIF4EP06730 217 aaKnown RBP12.13□□□□□ -0.47
PTPRF-202ENST00000372405 ZNF84P51523 738 aa12.13□□□□□ -0.47
PTPRF-202ENST00000372405 PSMA6P60900 246 aaKnown RBP12.13□□□□□ -0.47
PTPRF-202ENST00000372405 HIST1H3AP68431 136 aa12.13□□□□□ -0.47
PTPRF-202ENST00000372405 P2RY14Q15391 338 aa12.13□□□□□ -0.47
PTPRF-202ENST00000372405 BAK1Q16611 211 aa12.13□□□□□ -0.47
PTPRF-202ENST00000372405 HIST2H3PS2Q5TEC6 136 aa12.13□□□□□ -0.47
PTPRF-202ENST00000372405 FAM27BQ5VT28 67 aa12.13□□□□□ -0.47
PTPRF-202ENST00000372405 FAM131AQ6UXB0 335 aa12.13□□□□□ -0.47
PTPRF-202ENST00000372405 HIST2H3AQ71DI3 136 aa12.13□□□□□ -0.47
PTPRF-202ENST00000372405 TUSC5Q8IXB3 177 aa12.13□□□□□ -0.47
PTPRF-202ENST00000372405 TRMT10AQ8TBZ6 339 aaKnown RBP12.13□□□□□ -0.47
PTPRF-202ENST00000372405 CPT1CQ8TCG5 803 aa12.13□□□□□ -0.47
PTPRF-202ENST00000372405 TSEN15Q8WW01 171 aaKnown RBP12.13□□□□□ -0.47
PTPRF-202ENST00000372405 PPP1R3EQ9H7J1 279 aa12.13□□□□□ -0.47
PTPRF-202ENST00000372405 TMEM38BQ9NVV0 291 aa12.13□□□□□ -0.47
PTPRF-202ENST00000372405 MCTS1Q9ULC4 181 aaKnown RBP12.13□□□□□ -0.47
PTPRF-202ENST00000372405 CLEC4AQ9UMR7 237 aa12.13□□□□□ -0.47
PTPRF-202ENST00000372405 ARHGAP21Q5T5U3 1957 aa12.13□□□□□ -0.47
PTPRF-202ENST00000372405 IFITM5A6NNB3 132 aa12.12□□□□□ -0.47
PTPRF-202ENST00000372405 P2RY10O00398 339 aa12.12□□□□□ -0.47
PTPRF-202ENST00000372405 SYNGR4O95473 234 aa12.12□□□□□ -0.47
PTPRF-202ENST00000372405 ACSM4P0C7M7 580 aa12.12□□□□□ -0.47
PTPRF-202ENST00000372405 SNRPBP14678 240 aaKnown RBP12.12□□□□□ -0.47
PTPRF-202ENST00000372405 CPN1P15169 458 aa12.12□□□□□ -0.47
PTPRF-202ENST00000372405 ZNF24P17028 368 aa12.12□□□□□ -0.47
PTPRF-202ENST00000372405 PRKXP51817 358 aa12.12□□□□□ -0.47
PTPRF-202ENST00000372405 RSPO1Q2MKA7 263 aaPredicted RBP12.12□□□□□ -0.47
PTPRF-202ENST00000372405 CCDC92Q53HC0 331 aaPredicted RBP12.12□□□□□ -0.47
PTPRF-202ENST00000372405 RIPPLY2Q5TAB7 128 aa12.12□□□□□ -0.47
PTPRF-202ENST00000372405 BCL2L15Q5TBC7 163 aa12.12□□□□□ -0.47
PTPRF-202ENST00000372405 TSPO2Q5TGU0 170 aa12.12□□□□□ -0.47
PTPRF-202ENST00000372405 ZNF544Q6NX49 715 aa12.12□□□□□ -0.47
PTPRF-202ENST00000372405 MED12LQ86YW9 2145 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms