RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 CYB5R1Q9UHQ9 305 aa18.56■□□□□ 0.56
CCDC88B-203ENST00000359902 U3KQ87 197 aa18.56■□□□□ 0.56
CCDC88B-203ENST00000359902 SNRPGP15A8MWD9 76 aa18.56■□□□□ 0.56
CCDC88B-203ENST00000359902 TNFRSF10AO00220 468 aa18.56■□□□□ 0.56
CCDC88B-203ENST00000359902 HOXA6P31267 233 aa18.56■□□□□ 0.56
CCDC88B-203ENST00000359902 RBMS2Q15434 407 aaKnown RBP18.56■□□□□ 0.56
CCDC88B-203ENST00000359902 MEIOBQ8N635 442 aa18.56■□□□□ 0.56
CCDC88B-203ENST00000359902 OR10H5Q8NGA6 315 aa18.56■□□□□ 0.56
CCDC88B-203ENST00000359902 GPX8Q8TED1 209 aa18.56■□□□□ 0.56
CCDC88B-203ENST00000359902 SLAMF6Q96DU3 332 aa18.56■□□□□ 0.56
CCDC88B-203ENST00000359902 SORCS2Q96PQ0 1159 aa18.56■□□□□ 0.56
CCDC88B-203ENST00000359902 GPN1Q9HCN4 374 aaPredicted RBP18.56■□□□□ 0.56
CCDC88B-203ENST00000359902 FAM206AQ9NX38 181 aa18.56■□□□□ 0.56
CCDC88B-203ENST00000359902 WDR87Q6ZQQ6 2873 aa18.55■□□□□ 0.56
CCDC88B-203ENST00000359902 CREBL2O60519 120 aaPredicted RBP18.55■□□□□ 0.56
CCDC88B-203ENST00000359902 UBCP0CG48 685 aaKnown RBP18.55■□□□□ 0.56
CCDC88B-203ENST00000359902 VSIG10L2P0DP72 767 aa18.55■□□□□ 0.56
CCDC88B-203ENST00000359902 GTF2F2P13984 249 aa18.55■□□□□ 0.56
CCDC88B-203ENST00000359902 C1orf100Q5SVJ3 147 aa18.55■□□□□ 0.56
CCDC88B-203ENST00000359902 THEM4Q5T1C6 240 aa18.55■□□□□ 0.56
CCDC88B-203ENST00000359902 C3orf33Q6P1S2 294 aa18.55■□□□□ 0.56
CCDC88B-203ENST00000359902 SLC36A1Q7Z2H8 476 aa18.55■□□□□ 0.56
CCDC88B-203ENST00000359902 LYPD6Q86Y78 171 aa18.55■□□□□ 0.56
CCDC88B-203ENST00000359902 UEVLDQ8IX04 471 aa18.55■□□□□ 0.56
CCDC88B-203ENST00000359902 WDSUB1Q8N9V3 476 aa18.55■□□□□ 0.56
CCDC88B-203ENST00000359902 ELP5Q8TE02 316 aa18.55■□□□□ 0.56
CCDC88B-203ENST00000359902 GAREM1Q9H706 876 aa18.55■□□□□ 0.56
CCDC88B-203ENST00000359902 CA10Q9NS85 328 aa18.55■□□□□ 0.56
CCDC88B-203ENST00000359902 PIPOXQ9P0Z9 390 aa18.55■□□□□ 0.56
CCDC88B-203ENST00000359902 A0A1W2PNR3 127 aa18.55■□□□□ 0.56
CCDC88B-203ENST00000359902 LDLRAD4O15165 306 aa18.55■□□□□ 0.56
CCDC88B-203ENST00000359902 TOXO94900 526 aa18.55■□□□□ 0.56
CCDC88B-203ENST00000359902 AKAIN1P0CW23 69 aa18.55■□□□□ 0.56
CCDC88B-203ENST00000359902 FGF5P12034 268 aa18.55■□□□□ 0.56
CCDC88B-203ENST00000359902 GABRA1P14867 456 aa18.55■□□□□ 0.56
CCDC88B-203ENST00000359902 LAP3P28838 519 aa18.55■□□□□ 0.56
CCDC88B-203ENST00000359902 EIF1AXP47813 144 aaKnown RBP18.55■□□□□ 0.56
CCDC88B-203ENST00000359902 GPR85P60893 370 aa18.55■□□□□ 0.56
CCDC88B-203ENST00000359902 JAGN1Q8N5M9 183 aa18.55■□□□□ 0.56
CCDC88B-203ENST00000359902 CLEC1AQ8NC01 280 aa18.55■□□□□ 0.56
CCDC88B-203ENST00000359902 ADPRHL1Q8NDY3 354 aa18.55■□□□□ 0.56
CCDC88B-203ENST00000359902 OR10S1Q8NGN2 331 aa18.55■□□□□ 0.56
CCDC88B-203ENST00000359902 IFI44Q8TCB0 444 aa18.55■□□□□ 0.56
CCDC88B-203ENST00000359902 GINS4Q9BRT9 223 aa18.55■□□□□ 0.56
CCDC88B-203ENST00000359902 CHIAQ9BZP6 476 aa18.55■□□□□ 0.56
CCDC88B-203ENST00000359902 EIF3KQ9UBQ5 218 aaKnown RBP18.55■□□□□ 0.56
CCDC88B-203ENST00000359902 PISDQ9UG56 409 aa18.55■□□□□ 0.56
CCDC88B-203ENST00000359902 LOC390937A0A1W2PQ73 354 aa18.54■□□□□ 0.56
CCDC88B-203ENST00000359902 FCER2P06734 321 aa18.54■□□□□ 0.56
CCDC88B-203ENST00000359902 ACSM4P0C7M7 580 aa18.54■□□□□ 0.56
CCDC88B-203ENST00000359902 SSBP1Q04837 148 aaKnown RBP18.54■□□□□ 0.56
CCDC88B-203ENST00000359902 UBALD2Q8IYN6 164 aa18.54■□□□□ 0.56
CCDC88B-203ENST00000359902 ZNF680Q8NEM1 530 aa18.54■□□□□ 0.56
CCDC88B-203ENST00000359902 OR2I1PQ8NGU4 316 aa18.54■□□□□ 0.56
CCDC88B-203ENST00000359902 SEH1LQ96EE3 360 aa18.54■□□□□ 0.56
CCDC88B-203ENST00000359902 OR5B2Q96R09 309 aa18.54■□□□□ 0.56
CCDC88B-203ENST00000359902 ZNF814B7Z6K7 855 aa18.54■□□□□ 0.56
CCDC88B-203ENST00000359902 TTRP02766 147 aa18.54■□□□□ 0.56
CCDC88B-203ENST00000359902 CD3DP04234 171 aa18.54■□□□□ 0.56
CCDC88B-203ENST00000359902 CYC1P08574 325 aa18.54■□□□□ 0.56
CCDC88B-203ENST00000359902 ZNF28P17035 718 aa18.54■□□□□ 0.56
CCDC88B-203ENST00000359902 OR51S1Q8NGJ8 323 aa18.54■□□□□ 0.56
CCDC88B-203ENST00000359902 OR6N1Q8NGY5 312 aa18.54■□□□□ 0.56
CCDC88B-203ENST00000359902 RADILQ96JH8 1075 aa18.54■□□□□ 0.56
CCDC88B-203ENST00000359902 CDX2Q99626 313 aaPredicted RBP18.54■□□□□ 0.56
CCDC88B-203ENST00000359902 GAL3ST1Q99999 423 aa18.54■□□□□ 0.56
CCDC88B-203ENST00000359902 RHBDD3Q9Y3P4 386 aa18.54■□□□□ 0.56
CCDC88B-203ENST00000359902 TNRC6BQ9UPQ9 1833 aaKnown RBP18.53■□□□□ 0.56
CCDC88B-203ENST00000359902 PGA4P0DJD7 388 aa18.53■□□□□ 0.56
CCDC88B-203ENST00000359902 PGA3P0DJD8 388 aa18.53■□□□□ 0.56
CCDC88B-203ENST00000359902 SSTR2P30874 369 aa18.53■□□□□ 0.56
CCDC88B-203ENST00000359902 ZNF81P51508 661 aa18.53■□□□□ 0.56
CCDC88B-203ENST00000359902 CLRN1P58418 232 aa18.53■□□□□ 0.56
CCDC88B-203ENST00000359902 PCOLCEQ15113 449 aa18.53■□□□□ 0.56
CCDC88B-203ENST00000359902 ZNF627Q7L945 461 aa18.53■□□□□ 0.56
CCDC88B-203ENST00000359902 ADGRE4PQ86SQ3 457 aa18.53■□□□□ 0.56
CCDC88B-203ENST00000359902 FADS6Q8N9I5 356 aa18.53■□□□□ 0.56
CCDC88B-203ENST00000359902 OR52B4Q8NGK2 314 aa18.53■□□□□ 0.56
CCDC88B-203ENST00000359902 DVL3Q92997 716 aaPredicted RBP18.53■□□□□ 0.56
CCDC88B-203ENST00000359902 FGGYQ96C11 551 aa18.53■□□□□ 0.56
CCDC88B-203ENST00000359902 IRF2BPLQ9H1B7 796 aa18.53■□□□□ 0.56
CCDC88B-203ENST00000359902 C1orf198Q9H425 327 aa18.53■□□□□ 0.56
CCDC88B-203ENST00000359902 WDR54Q9H977 334 aa18.53■□□□□ 0.56
CCDC88B-203ENST00000359902 MYEF2Q9P2K5 600 aaKnown RBP18.53■□□□□ 0.56
CCDC88B-203ENST00000359902 CHCHD2Q9Y6H1 151 aaPredicted RBP18.53■□□□□ 0.56
CCDC88B-203ENST00000359902 A0A1W2PPL8 197 aa18.52■□□□□ 0.56
CCDC88B-203ENST00000359902 TRAF3IP2O43734 574 aaPredicted RBP18.52■□□□□ 0.56
CCDC88B-203ENST00000359902 PSMA6P60900 246 aaKnown RBP18.52■□□□□ 0.56
CCDC88B-203ENST00000359902 MFAP5Q13361 173 aa18.52■□□□□ 0.56
CCDC88B-203ENST00000359902 IL11RAQ14626 422 aa18.52■□□□□ 0.56
CCDC88B-203ENST00000359902 OR10K2Q6IF99 312 aa18.52■□□□□ 0.56
CCDC88B-203ENST00000359902 STEAP1BQ6NZ63 245 aa18.52■□□□□ 0.56
CCDC88B-203ENST00000359902 GPAT4Q86UL3 456 aa18.52■□□□□ 0.56
CCDC88B-203ENST00000359902 ELMOD2Q8IZ81 293 aa18.52■□□□□ 0.56
CCDC88B-203ENST00000359902 OR4D6Q8NGJ1 314 aa18.52■□□□□ 0.56
CCDC88B-203ENST00000359902 OR8S1Q8NH09 359 aa18.52■□□□□ 0.56
CCDC88B-203ENST00000359902 EDAQ92838 391 aa18.52■□□□□ 0.56
CCDC88B-203ENST00000359902 IER2Q9BTL4 223 aa18.52■□□□□ 0.56
CCDC88B-203ENST00000359902 B3GNT2Q9NY97 397 aa18.52■□□□□ 0.56
CCDC88B-203ENST00000359902 SULT1C2O00338 296 aa18.52■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms