RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 KLK10O43240 276 aa11.82□□□□□ -0.52
HMGB1-202ENST00000339872 SLC19A2O60779 497 aa11.82□□□□□ -0.52
HMGB1-202ENST00000339872 PAHP00439 452 aa11.82□□□□□ -0.52
HMGB1-202ENST00000339872 LSM6P62312 80 aaKnown RBP11.82□□□□□ -0.52
HMGB1-202ENST00000339872 TAF13Q15543 124 aa11.82□□□□□ -0.52
HMGB1-202ENST00000339872 RSPO4Q2I0M5 234 aaPredicted RBP11.82□□□□□ -0.52
HMGB1-202ENST00000339872 BCL2L15Q5TBC7 163 aa11.82□□□□□ -0.52
HMGB1-202ENST00000339872 STAC2Q6ZMT1 411 aa11.82□□□□□ -0.52
HMGB1-202ENST00000339872 DCDC5Q6ZRR9 648 aa11.82□□□□□ -0.52
HMGB1-202ENST00000339872 FOXL2NBQ6ZUU3 175 aa11.82□□□□□ -0.52
HMGB1-202ENST00000339872 ZC3HAV1Q7Z2W4 902 aaKnown RBP11.82□□□□□ -0.52
HMGB1-202ENST00000339872 OR8H2Q8N162 312 aa11.82□□□□□ -0.52
HMGB1-202ENST00000339872 GPR137CQ8N3F9 429 aa11.82□□□□□ -0.52
HMGB1-202ENST00000339872 LRRC18Q8N456 261 aa11.82□□□□□ -0.52
HMGB1-202ENST00000339872 SAMD12Q8N8I0 201 aa11.82□□□□□ -0.52
HMGB1-202ENST00000339872 NABP1Q96AH0 204 aa11.82□□□□□ -0.52
HMGB1-202ENST00000339872 GFI1Q99684 422 aa11.82□□□□□ -0.52
HMGB1-202ENST00000339872 SRRQ9GZT4 340 aa11.82□□□□□ -0.52
HMGB1-202ENST00000339872 MCTS1Q9ULC4 181 aaKnown RBP11.82□□□□□ -0.52
HMGB1-202ENST00000339872 DNAJC13O75165 2243 aa11.82□□□□□ -0.52
HMGB1-202ENST00000339872 TRAV8-7A0A075B6U6 113 aa11.82□□□□□ -0.52
HMGB1-202ENST00000339872 TRBV5-7A0A0A0MS05 114 aa11.82□□□□□ -0.52
HMGB1-202ENST00000339872 ACTL6AO96019 429 aa11.82□□□□□ -0.52
HMGB1-202ENST00000339872 RAF1P04049 648 aa11.82□□□□□ -0.52
HMGB1-202ENST00000339872 ELK1P19419 428 aa11.82□□□□□ -0.52
HMGB1-202ENST00000339872 SPINK2P20155 84 aa11.82□□□□□ -0.52
HMGB1-202ENST00000339872 MMP16P51512 607 aa11.82□□□□□ -0.52
HMGB1-202ENST00000339872 FOXC1Q12948 553 aa11.82□□□□□ -0.52
HMGB1-202ENST00000339872 TRIM16LQ309B1 348 aa11.82□□□□□ -0.52
HMGB1-202ENST00000339872 FNDC9Q8TBE3 224 aa11.82□□□□□ -0.52
HMGB1-202ENST00000339872 THRSPQ92748 146 aa11.82□□□□□ -0.52
HMGB1-202ENST00000339872 CRLF2Q9HC73 371 aa11.82□□□□□ -0.52
HMGB1-202ENST00000339872 FAM206AQ9NX38 181 aa11.82□□□□□ -0.52
HMGB1-202ENST00000339872 DHDHQ9UQ10 334 aa11.82□□□□□ -0.52
HMGB1-202ENST00000339872 LOC400499M0QZD8 3231 aa11.82□□□□□ -0.52
HMGB1-202ENST00000339872 TRGV5A0A0B4J1U4 118 aa11.81□□□□□ -0.52
HMGB1-202ENST00000339872 A0A0B4J203 849 aa11.81□□□□□ -0.52
HMGB1-202ENST00000339872 LOC107986453A0A1B0GWG9 222 aa11.81□□□□□ -0.52
HMGB1-202ENST00000339872 TFECO14948 347 aaPredicted RBP11.81□□□□□ -0.52
HMGB1-202ENST00000339872 MAGEB3O15480 346 aa11.81□□□□□ -0.52
HMGB1-202ENST00000339872 EFSO43281 561 aa11.81□□□□□ -0.52
HMGB1-202ENST00000339872 SNRPBP14678 240 aaKnown RBP11.81□□□□□ -0.52
HMGB1-202ENST00000339872 DCTDP32321 178 aa11.81□□□□□ -0.52
HMGB1-202ENST00000339872 EVX1P49640 407 aa11.81□□□□□ -0.52
HMGB1-202ENST00000339872 ENDOGQ14249 297 aaKnown RBP11.81□□□□□ -0.52
HMGB1-202ENST00000339872 BCL2A1Q16548 175 aa11.81□□□□□ -0.52
HMGB1-202ENST00000339872 XKRXQ6PP77 449 aa11.81□□□□□ -0.52
HMGB1-202ENST00000339872 Q6ZNX1 250 aa11.81□□□□□ -0.52
HMGB1-202ENST00000339872 PRRG4Q9BZD6 226 aa11.81□□□□□ -0.52
HMGB1-202ENST00000339872 ZCCHC4Q9H5U6 513 aa11.81□□□□□ -0.52
HMGB1-202ENST00000339872 ZDHHC11Q9H8X9 412 aa11.81□□□□□ -0.52
HMGB1-202ENST00000339872 PNRC2Q9NPJ4 139 aaKnown RBP11.81□□□□□ -0.52
HMGB1-202ENST00000339872 PAQR5Q9NXK6 330 aaPredicted RBP11.81□□□□□ -0.52
HMGB1-202ENST00000339872 NOSIPQ9Y314 301 aaKnown RBP11.81□□□□□ -0.52
HMGB1-202ENST00000339872 PTPRZ1P23471 2315 aaPredicted RBP11.81□□□□□ -0.52
HMGB1-202ENST00000339872 ZFHX4Q86UP3 3567 aa11.81□□□□□ -0.52
HMGB1-202ENST00000339872 NCOA6Q14686 2063 aaPredicted RBP11.81□□□□□ -0.52
HMGB1-202ENST00000339872 ISPDA4D126 451 aa11.81□□□□□ -0.52
HMGB1-202ENST00000339872 GFRA3O60609 400 aa11.81□□□□□ -0.52
HMGB1-202ENST00000339872 MAS1P04201 325 aa11.81□□□□□ -0.52
HMGB1-202ENST00000339872 EIF4EP06730 217 aaKnown RBP11.81□□□□□ -0.52
HMGB1-202ENST00000339872 PRKXP51817 358 aa11.81□□□□□ -0.52
HMGB1-202ENST00000339872 PSMA6P60900 246 aaKnown RBP11.81□□□□□ -0.52
HMGB1-202ENST00000339872 IL18Q14116 193 aa11.81□□□□□ -0.52
HMGB1-202ENST00000339872 PYDC2Q56P42 97 aa11.81□□□□□ -0.52
HMGB1-202ENST00000339872 HES5Q5TA89 166 aa11.81□□□□□ -0.52
HMGB1-202ENST00000339872 ZNF704Q6ZNC4 412 aaPredicted RBP11.81□□□□□ -0.52
HMGB1-202ENST00000339872 RHOUQ7L0Q8 258 aa11.81□□□□□ -0.52
HMGB1-202ENST00000339872 SPRR3Q9UBC9 169 aa11.81□□□□□ -0.52
HMGB1-202ENST00000339872 EXTL2Q9UBQ6 330 aa11.81□□□□□ -0.52
HMGB1-202ENST00000339872 HHLA2Q9UM44 414 aa11.81□□□□□ -0.52
HMGB1-202ENST00000339872 V9GY05 133 aa11.81□□□□□ -0.52
HMGB1-202ENST00000339872 TNRC6AQ8NDV7 1962 aaKnown RBP11.8□□□□□ -0.52
HMGB1-202ENST00000339872 IGKV3D-15A0A087WSY6 115 aa11.8□□□□□ -0.52
HMGB1-202ENST00000339872 TRAV17A0A0B4J275 112 aa11.8□□□□□ -0.52
HMGB1-202ENST00000339872 IFITM5A6NNB3 132 aa11.8□□□□□ -0.52
HMGB1-202ENST00000339872 P2RY10O00398 339 aa11.8□□□□□ -0.52
HMGB1-202ENST00000339872 CEACAM4O75871 244 aa11.8□□□□□ -0.52
HMGB1-202ENST00000339872 OCMP0CE72 109 aaPredicted RBP11.8□□□□□ -0.52
HMGB1-202ENST00000339872 UBCP0CG48 685 aaKnown RBP11.8□□□□□ -0.52
HMGB1-202ENST00000339872 ZNF24P17028 368 aa11.8□□□□□ -0.52
HMGB1-202ENST00000339872 ADRA2CP18825 462 aa11.8□□□□□ -0.52
HMGB1-202ENST00000339872 APEX1P27695 318 aaKnown RBP11.8□□□□□ -0.52
HMGB1-202ENST00000339872 MRPS34P82930 218 aaKnown RBP11.8□□□□□ -0.52
HMGB1-202ENST00000339872 LINGO2Q7L985 606 aa11.8□□□□□ -0.52
HMGB1-202ENST00000339872 CHMP1BQ7LBR1 199 aa11.8□□□□□ -0.52
HMGB1-202ENST00000339872 LRRTM1Q86UE6 522 aa11.8□□□□□ -0.52
HMGB1-202ENST00000339872 LRRC28Q86X40 367 aaPredicted RBP11.8□□□□□ -0.52
HMGB1-202ENST00000339872 DNAAF1Q8NEP3 725 aa11.8□□□□□ -0.52
HMGB1-202ENST00000339872 OR13C3Q8NGS6 347 aa11.8□□□□□ -0.52
HMGB1-202ENST00000339872 OR5H6Q8NGV6 325 aa11.8□□□□□ -0.52
HMGB1-202ENST00000339872 ZNF671Q8TAW3 534 aa11.8□□□□□ -0.52
HMGB1-202ENST00000339872 ASB5Q8WWX0 329 aa11.8□□□□□ -0.52
HMGB1-202ENST00000339872 TMEM45BQ96B21 275 aa11.8□□□□□ -0.52
HMGB1-202ENST00000339872 PBOV1Q9GZY1 135 aa11.8□□□□□ -0.52
HMGB1-202ENST00000339872 NIPAL2Q9H841 368 aa11.8□□□□□ -0.52
HMGB1-202ENST00000339872 EMC3Q9P0I2 261 aa11.8□□□□□ -0.52
HMGB1-202ENST00000339872 ABRACLQ9P1F3 81 aa11.8□□□□□ -0.52
HMGB1-202ENST00000339872 CLEC4AQ9UMR7 237 aa11.8□□□□□ -0.52
HMGB1-202ENST00000339872 ANXA2P2A6NMY6 339 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms