RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 IRF7Q92985 503 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 ST6GAL2Q96JF0 529 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 ABHD1Q96SE0 405 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 NKX3-1Q99801 234 aaPredicted RBP4.82□□□□□ -1.64
SCN1A-201ENST00000303395 PIGQQ9BRB3 760 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 OR51M1Q9H341 326 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 RALYQ9UKM9 306 aaKnown RBP4.82□□□□□ -1.64
SCN1A-201ENST00000303395 IGLV3-16A0A075B6K0 115 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 A0A087WZY1 265 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 OR6C76A6NM76 312 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 CSO75390 466 aaKnown RBP4.81□□□□□ -1.64
SCN1A-201ENST00000303395 SLC35E2P0CK97 266 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 PRKACGP22612 351 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 FPR2P25090 351 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 PMELP40967 661 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 PTH2RP49190 550 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 DMRTA1Q5VZB9 504 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 SLCO4C1Q6ZQN7 724 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 CFAP77Q6ZQR2 320 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 LINC00596Q86U02 117 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 SIAH3Q8IW03 269 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 ARFGAP1Q8N6T3 406 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 LRRC15Q8TF66 581 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 PSMF1Q92530 271 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 PRR14Q9BWN1 585 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 ANGPTL4Q9BY76 406 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 SLC35B3Q9H1N7 401 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 C1orf198Q9H425 327 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 PITPNC1Q9UKF7 332 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 DNAJC25-GNG10A0A024R161 153 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 FAM90A10PA6NDY2 464 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 FAM90A18PA6NE21 464 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 FAM90A16PA6NEW6 464 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 FAM90A20PA6NIJ5 464 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 FAM90A8PA6NJQ4 464 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 FAM90A7PA6NKC0 464 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 FAM90A22PA8MWA6 464 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 FAM90A12PA8MX19 464 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 FAM90A5PA8MXJ8 464 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 FAM90A23PA8MXZ1 464 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 HSD17B6O14756 317 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 PRICKLE3O43900 615 aaPredicted RBP4.81□□□□□ -1.64
SCN1A-201ENST00000303395 YIF1AO95070 293 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 GPR75O95800 540 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 DDAH2O95865 285 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 OR8U8P0C7N1 319 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 FAM90A15PP0C7V4 464 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 FAM90A13PP0C7W8 464 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 FAM90A14PP0C7W9 464 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 FAM90A24PP0C7X0 464 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 PSMB3P49720 205 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 PCBP3P57721 371 aaKnown RBP4.81□□□□□ -1.64
SCN1A-201ENST00000303395 BTN1A1Q13410 526 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 FJX1Q86VR8 437 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 LAX1Q8IWV1 398 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 OR6K2Q8NGY2 324 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 IL1F10Q8WWZ1 152 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 ESAMQ96AP7 390 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 C2orf50Q96LR7 162 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 WWTR1Q9GZV5 400 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 CRISPLD2Q9H0B8 497 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 RHOFQ9HBH0 211 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 AMBNQ9NP70 447 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 TAS2R16Q9NYV7 291 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 B4GALT6Q9UBX8 382 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 SNRNP70P08621 437 aaKnown RBP4.81□□□□□ -1.64
SCN1A-201ENST00000303395 HOXC4P09017 264 aaPredicted RBP4.81□□□□□ -1.64
SCN1A-201ENST00000303395 MPZP25189 248 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 ITGB8P26012 769 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 PREPP48147 710 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 KCNAB1Q14722 419 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 DOK3Q7L591 496 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 Q8IYB0 196 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 MMP21Q8N119 569 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 BPIFB2Q8N4F0 458 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 OR4C5Q8NGB2 326 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 RAB40CQ96S21 281 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 UTP23Q9BRU9 249 aaKnown RBP4.81□□□□□ -1.64
SCN1A-201ENST00000303395 MANBALQ9NQG1 85 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 INIPQ9NRY2 104 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 WRAP73Q9P2S5 460 aaPredicted RBP4.81□□□□□ -1.64
SCN1A-201ENST00000303395 RCE1Q9Y256 329 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 LSM5Q9Y4Y9 91 aaKnown RBP4.81□□□□□ -1.64
SCN1A-201ENST00000303395 MMP24Q9Y5R2 645 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 RBBP6Q7Z6E9 1792 aaKnown RBP4.81□□□□□ -1.64
SCN1A-201ENST00000303395 DHRS7CA6NNS2 312 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 STC2O76061 302 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 IGLV3-27P01718 113 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 KLK1P06870 262 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 ACSM4P0C7M7 580 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 C21orf33P30042 268 aaPredicted RBP4.81□□□□□ -1.64
SCN1A-201ENST00000303395 IL2RGP31785 369 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 RAD52P43351 418 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 EFNA3P52797 238 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 B2MP61769 119 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 SNRPEP62304 92 aaKnown RBP4.81□□□□□ -1.64
SCN1A-201ENST00000303395 ERVK-25P63136 954 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 MRPS34P82930 218 aaKnown RBP4.81□□□□□ -1.64
SCN1A-201ENST00000303395 RIPPLY2Q5TAB7 128 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 LRFN4Q6PJG9 635 aa4.81□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms