RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 UGT2A1Q9Y4X1 527 aa11.97□□□□□ -0.49
CLN3-249ENST00000636685 SLC2A10O95528 541 aa11.96□□□□□ -0.49
CLN3-249ENST00000636685 MT-ATP6P00846 226 aa11.96□□□□□ -0.49
CLN3-249ENST00000636685 LIPFP07098 398 aa11.96□□□□□ -0.49
CLN3-249ENST00000636685 VSIG10L2P0DP72 767 aa11.96□□□□□ -0.49
CLN3-249ENST00000636685 PSMB10P40306 273 aa11.96□□□□□ -0.49
CLN3-249ENST00000636685 PMELP40967 661 aa11.96□□□□□ -0.49
CLN3-249ENST00000636685 ARF6P62330 175 aa11.96□□□□□ -0.49
CLN3-249ENST00000636685 MRPS34P82930 218 aaKnown RBP11.96□□□□□ -0.49
CLN3-249ENST00000636685 OR1Q1Q15612 314 aa11.96□□□□□ -0.49
CLN3-249ENST00000636685 SGCAQ16586 387 aa11.96□□□□□ -0.49
CLN3-249ENST00000636685 CD276Q5ZPR3 534 aa11.96□□□□□ -0.49
CLN3-249ENST00000636685 PGBD2Q6P3X8 592 aa11.96□□□□□ -0.49
CLN3-249ENST00000636685 OR5AS1Q8N127 324 aa11.96□□□□□ -0.49
CLN3-249ENST00000636685 NOXO1Q8NFA2 376 aa11.96□□□□□ -0.49
CLN3-249ENST00000636685 OR52E6Q96RD3 313 aa11.96□□□□□ -0.49
CLN3-249ENST00000636685 LYSTQ99698 3801 aa11.96□□□□□ -0.49
CLN3-249ENST00000636685 MKS1Q9NXB0 559 aa11.96□□□□□ -0.49
CLN3-249ENST00000636685 GAR1Q9NY12 217 aaKnown RBP11.96□□□□□ -0.49
CLN3-249ENST00000636685 CTSZQ9UBR2 303 aa11.96□□□□□ -0.49
CLN3-249ENST00000636685 PCDHGB5Q9Y5G0 923 aa11.96□□□□□ -0.49
CLN3-249ENST00000636685 A0A0B4J2E0 115 aa11.95□□□□□ -0.5
CLN3-249ENST00000636685 A0A1B0GX12 115 aa11.95□□□□□ -0.5
CLN3-249ENST00000636685 C3orf84H3BNL1 204 aa11.95□□□□□ -0.5
CLN3-249ENST00000636685 FSTL3O95633 263 aa11.95□□□□□ -0.5
CLN3-249ENST00000636685 ABHD16AO95870 558 aa11.95□□□□□ -0.5
CLN3-249ENST00000636685 FBP1P09467 338 aa11.95□□□□□ -0.5
CLN3-249ENST00000636685 NUDT7P0C024 238 aa11.95□□□□□ -0.5
CLN3-249ENST00000636685 IL12AP29459 219 aa11.95□□□□□ -0.5
CLN3-249ENST00000636685 MSX2P35548 267 aaPredicted RBP11.95□□□□□ -0.5
CLN3-249ENST00000636685 CDH12P55289 794 aa11.95□□□□□ -0.5
CLN3-249ENST00000636685 KRTAP10-11P60412 298 aa11.95□□□□□ -0.5
CLN3-249ENST00000636685 UFM1P61960 85 aa11.95□□□□□ -0.5
CLN3-249ENST00000636685 VSNL1P62760 191 aa11.95□□□□□ -0.5
CLN3-249ENST00000636685 EMX1Q04741 257 aaPredicted RBP11.95□□□□□ -0.5
CLN3-249ENST00000636685 C10orf128Q5T292 105 aa11.95□□□□□ -0.5
CLN3-249ENST00000636685 NUDCD3Q8IVD9 361 aa11.95□□□□□ -0.5
CLN3-249ENST00000636685 TMEM43Q9BTV4 400 aa11.95□□□□□ -0.5
CLN3-249ENST00000636685 MRPL13Q9BYD1 178 aaKnown RBP11.95□□□□□ -0.5
CLN3-249ENST00000636685 VIPAS39Q9H9C1 493 aa11.95□□□□□ -0.5
CLN3-249ENST00000636685 TMEM27Q9HBJ8 222 aa11.95□□□□□ -0.5
CLN3-249ENST00000636685 TMCC3Q9ULS5 477 aa11.95□□□□□ -0.5
CLN3-249ENST00000636685 STAB2Q8WWQ8 2551 aa11.95□□□□□ -0.5
CLN3-249ENST00000636685 IGKV1D-43A0A0B4J1Z2 117 aa11.94□□□□□ -0.5
CLN3-249ENST00000636685 TMEM247A6NEH6 219 aa11.94□□□□□ -0.5
CLN3-249ENST00000636685 SMIM23A6NLE4 172 aa11.94□□□□□ -0.5
CLN3-249ENST00000636685 LRRC30A6NM36 301 aa11.94□□□□□ -0.5
CLN3-249ENST00000636685 CH25HO95992 272 aa11.94□□□□□ -0.5
CLN3-249ENST00000636685 CD28P10747 220 aa11.94□□□□□ -0.5
CLN3-249ENST00000636685 CD33P20138 364 aa11.94□□□□□ -0.5
CLN3-249ENST00000636685 KIR2DS4P43632 304 aa11.94□□□□□ -0.5
CLN3-249ENST00000636685 NPY4RP50391 375 aa11.94□□□□□ -0.5
CLN3-249ENST00000636685 ZNF133P52736 654 aaPredicted RBP11.94□□□□□ -0.5
CLN3-249ENST00000636685 HOXA4Q00056 320 aaPredicted RBP11.94□□□□□ -0.5
CLN3-249ENST00000636685 DOC2BQ14184 412 aa11.94□□□□□ -0.5
CLN3-249ENST00000636685 ZNF181Q2M3W8 571 aa11.94□□□□□ -0.5
CLN3-249ENST00000636685 C11orf88Q6PI97 169 aa11.94□□□□□ -0.5
CLN3-249ENST00000636685 ALDH16A1Q8IZ83 802 aa11.94□□□□□ -0.5
CLN3-249ENST00000636685 C1orf87Q8N0U7 546 aa11.94□□□□□ -0.5
CLN3-249ENST00000636685 PNLDC1Q8NA58 520 aaKnown RBP11.94□□□□□ -0.5
CLN3-249ENST00000636685 NPEPL1Q8NDH3 523 aa11.94□□□□□ -0.5
CLN3-249ENST00000636685 OR4F17Q8NGA8 305 aa11.94□□□□□ -0.5
CLN3-249ENST00000636685 NSMAFQ92636 917 aa11.94□□□□□ -0.5
CLN3-249ENST00000636685 MAL2Q969L2 176 aa11.94□□□□□ -0.5
CLN3-249ENST00000636685 HAVCR1Q96D42 359 aa11.94□□□□□ -0.5
CLN3-249ENST00000636685 OR4F4Q96R69 305 aa11.94□□□□□ -0.5
CLN3-249ENST00000636685 WFDC6Q9BQY6 131 aa11.94□□□□□ -0.5
CLN3-249ENST00000636685 MMADHCQ9H3L0 296 aaPredicted RBP11.94□□□□□ -0.5
CLN3-249ENST00000636685 BCL2L10Q9HD36 194 aa11.94□□□□□ -0.5
CLN3-249ENST00000636685 STARD10Q9Y365 291 aa11.94□□□□□ -0.5
CLN3-249ENST00000636685 ADARB2-AS1A8MUL3 147 aa11.93□□□□□ -0.5
CLN3-249ENST00000636685 RFXANKO14593 260 aa11.93□□□□□ -0.5
CLN3-249ENST00000636685 TPST1O60507 370 aa11.93□□□□□ -0.5
CLN3-249ENST00000636685 TPST2O60704 377 aa11.93□□□□□ -0.5
CLN3-249ENST00000636685 FBXO24O75426 580 aa11.93□□□□□ -0.5
CLN3-249ENST00000636685 TRMUO75648 421 aaKnown RBP11.93□□□□□ -0.5
CLN3-249ENST00000636685 OPN1SWP03999 348 aa11.93□□□□□ -0.5
CLN3-249ENST00000636685 PRKAR1BP31321 381 aa11.93□□□□□ -0.5
CLN3-249ENST00000636685 SERPINB5P36952 375 aa11.93□□□□□ -0.5
CLN3-249ENST00000636685 ETV4P43268 484 aa11.93□□□□□ -0.5
CLN3-249ENST00000636685 SRP9P49458 86 aaKnown RBP11.93□□□□□ -0.5
CLN3-249ENST00000636685 NCALDP61601 193 aa11.93□□□□□ -0.5
CLN3-249ENST00000636685 PRB3Q04118 309 aaPredicted RBP11.93□□□□□ -0.5
CLN3-249ENST00000636685 FMODQ06828 376 aa11.93□□□□□ -0.5
CLN3-249ENST00000636685 ZNF74Q16587 644 aa11.93□□□□□ -0.5
CLN3-249ENST00000636685 GTDC1Q4AE62 458 aa11.93□□□□□ -0.5
CLN3-249ENST00000636685 ARL9Q6T311 187 aa11.93□□□□□ -0.5
CLN3-249ENST00000636685 VMO1Q7Z5L0 202 aa11.93□□□□□ -0.5
CLN3-249ENST00000636685 CALHM3Q86XJ0 350 aa11.93□□□□□ -0.5
CLN3-249ENST00000636685 SPERTQ8NA61 448 aa11.93□□□□□ -0.5
CLN3-249ENST00000636685 ZIM3Q96PE6 472 aa11.93□□□□□ -0.5
CLN3-249ENST00000636685 SEPHS2Q99611 448 aa11.93□□□□□ -0.5
CLN3-249ENST00000636685 MEAF6Q9HAF1 191 aa11.93□□□□□ -0.5
CLN3-249ENST00000636685 TPT1P8Q9HAU6 139 aa11.93□□□□□ -0.5
CLN3-249ENST00000636685 SMURF1Q9HCE7 757 aa11.93□□□□□ -0.5
CLN3-249ENST00000636685 SLC17A7Q9P2U7 560 aa11.93□□□□□ -0.5
CLN3-249ENST00000636685 ERVK-18Q9QC07 812 aa11.93□□□□□ -0.5
CLN3-249ENST00000636685 HUWE1Q7Z6Z7 4374 aaKnown RBP11.92□□□□□ -0.5
CLN3-249ENST00000636685 A0A1W2PRD5 423 aa11.92□□□□□ -0.5
CLN3-249ENST00000636685 A0A1W2PRF3 423 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms