RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 SLC26A1Q9H2B4 701 aa9.26□□□□□ -0.93
VPS39-214ENST00000614932 PLEKHA2Q9HB19 425 aa9.26□□□□□ -0.93
VPS39-214ENST00000614932 TRIM36Q9NQ86 728 aa9.26□□□□□ -0.93
VPS39-214ENST00000614932 CYTL1Q9NRR1 136 aa9.26□□□□□ -0.93
VPS39-214ENST00000614932 TM7SF3Q9NS93 570 aa9.26□□□□□ -0.93
VPS39-214ENST00000614932 SHPKQ9UHJ6 478 aa9.26□□□□□ -0.93
VPS39-214ENST00000614932 H0YIV9 168 aa9.26□□□□□ -0.93
VPS39-214ENST00000614932 SPINT1O43278 529 aa9.26□□□□□ -0.93
VPS39-214ENST00000614932 ZNF432O94892 652 aa9.26□□□□□ -0.93
VPS39-214ENST00000614932 ZFPL1O95159 310 aa9.26□□□□□ -0.93
VPS39-214ENST00000614932 TGFB1P01137 390 aa9.26□□□□□ -0.93
VPS39-214ENST00000614932 EPHX1P07099 455 aa9.26□□□□□ -0.93
VPS39-214ENST00000614932 IL6RP08887 468 aaPredicted RBP9.26□□□□□ -0.93
VPS39-214ENST00000614932 TRGC1P0CF51 173 aa9.26□□□□□ -0.93
VPS39-214ENST00000614932 AMD1P17707 334 aa9.26□□□□□ -0.93
VPS39-214ENST00000614932 ITPKBP27987 946 aa9.26□□□□□ -0.93
VPS39-214ENST00000614932 IMPA1P29218 277 aa9.26□□□□□ -0.93
VPS39-214ENST00000614932 SELENOTP62341 195 aa9.26□□□□□ -0.93
VPS39-214ENST00000614932 GRHL2Q6ISB3 625 aa9.26□□□□□ -0.93
VPS39-214ENST00000614932 ZNF740Q8NDX6 193 aa9.26□□□□□ -0.93
VPS39-214ENST00000614932 OR4C16Q8NGL9 310 aa9.26□□□□□ -0.93
VPS39-214ENST00000614932 OR14K1Q8NGZ2 314 aa9.26□□□□□ -0.93
VPS39-214ENST00000614932 C1orf216Q8TAB5 229 aa9.26□□□□□ -0.93
VPS39-214ENST00000614932 CSGALNACT1Q8TDX6 532 aa9.26□□□□□ -0.93
VPS39-214ENST00000614932 NUDT11Q96G61 164 aa9.26□□□□□ -0.93
VPS39-214ENST00000614932 SHDQ96IW2 340 aa9.26□□□□□ -0.93
VPS39-214ENST00000614932 SEC22AQ96IW7 307 aa9.26□□□□□ -0.93
VPS39-214ENST00000614932 TMEM121BQ9BXQ6 578 aaPredicted RBP9.26□□□□□ -0.93
VPS39-214ENST00000614932 ACTRT3Q9BYD9 372 aa9.26□□□□□ -0.93
VPS39-214ENST00000614932 SRMSQ9H3Y6 488 aa9.26□□□□□ -0.93
VPS39-214ENST00000614932 SLC23A2Q9UGH3 650 aa9.26□□□□□ -0.93
VPS39-214ENST00000614932 UMAD1C9J7I0 102 aa9.25□□□□□ -0.93
VPS39-214ENST00000614932 ZNF208O43345 1280 aa9.25□□□□□ -0.93
VPS39-214ENST00000614932 SYT7O43581 403 aa9.25□□□□□ -0.93
VPS39-214ENST00000614932 TRGC2P03986 189 aa9.25□□□□□ -0.93
VPS39-214ENST00000614932 SELEP16581 610 aa9.25□□□□□ -0.93
VPS39-214ENST00000614932 PRPH2P23942 346 aa9.25□□□□□ -0.93
VPS39-214ENST00000614932 RPL29P47914 159 aaKnown RBP9.25□□□□□ -0.93
VPS39-214ENST00000614932 KLF3P57682 345 aaPredicted RBP9.25□□□□□ -0.93
VPS39-214ENST00000614932 RASGEF1BQ0VAM2 473 aa9.25□□□□□ -0.93
VPS39-214ENST00000614932 ACSM3Q53FZ2 586 aa9.25□□□□□ -0.93
VPS39-214ENST00000614932 TMEM69Q5SWH9 247 aa9.25□□□□□ -0.93
VPS39-214ENST00000614932 C9orf50Q5SZB4 431 aa9.25□□□□□ -0.93
VPS39-214ENST00000614932 FAHD2BQ6P2I3 314 aaPredicted RBP9.25□□□□□ -0.93
VPS39-214ENST00000614932 LCTLQ6UWM7 567 aa9.25□□□□□ -0.93
VPS39-214ENST00000614932 OR4K17Q8NGC6 315 aa9.25□□□□□ -0.93
VPS39-214ENST00000614932 FAHD2AQ96GK7 314 aa9.25□□□□□ -0.93
VPS39-214ENST00000614932 MTCL1Q9Y4B5 1905 aaKnown RBP9.25□□□□□ -0.93
VPS39-214ENST00000614932 TRBV11-1A0A0K0K1C0 115 aa9.25□□□□□ -0.93
VPS39-214ENST00000614932 GXYLT2A0PJZ3 443 aa9.25□□□□□ -0.93
VPS39-214ENST00000614932 PLRG1O43660 514 aaKnown RBP9.25□□□□□ -0.93
VPS39-214ENST00000614932 PLPP2O43688 288 aa9.25□□□□□ -0.93
VPS39-214ENST00000614932 RPP14O95059 124 aaKnown RBP9.25□□□□□ -0.93
VPS39-214ENST00000614932 PPP1R3DO95685 299 aa9.25□□□□□ -0.93
VPS39-214ENST00000614932 STATHP02808 62 aa9.25□□□□□ -0.93
VPS39-214ENST00000614932 APODP05090 189 aa9.25□□□□□ -0.93
VPS39-214ENST00000614932 S100A7P31151 101 aa9.25□□□□□ -0.93
VPS39-214ENST00000614932 PBX2P40425 430 aa9.25□□□□□ -0.93
VPS39-214ENST00000614932 OPRD1P41143 372 aa9.25□□□□□ -0.93
VPS39-214ENST00000614932 RPS13P62277 151 aaKnown RBP9.25□□□□□ -0.93
VPS39-214ENST00000614932 MC1RQ01726 317 aa9.25□□□□□ -0.93
VPS39-214ENST00000614932 ACSM2AQ08AH3 577 aa9.25□□□□□ -0.93
VPS39-214ENST00000614932 ATP6V1FQ16864 119 aa9.25□□□□□ -0.93
VPS39-214ENST00000614932 PRRT3Q5FWE3 981 aa9.25□□□□□ -0.93
VPS39-214ENST00000614932 ACSM2BQ68CK6 577 aa9.25□□□□□ -0.93
VPS39-214ENST00000614932 OR8G2PQ6IF36 304 aa9.25□□□□□ -0.93
VPS39-214ENST00000614932 KIRREL2Q6UWL6 708 aa9.25□□□□□ -0.93
VPS39-214ENST00000614932 FRRS1Q6ZNA5 592 aa9.25□□□□□ -0.93
VPS39-214ENST00000614932 TMPPEQ6ZT21 453 aa9.25□□□□□ -0.93
VPS39-214ENST00000614932 C11orf42Q8N5U0 333 aa9.25□□□□□ -0.93
VPS39-214ENST00000614932 SLC35G3Q8N808 338 aa9.25□□□□□ -0.93
VPS39-214ENST00000614932 OR4S1Q8NGB4 309 aa9.25□□□□□ -0.93
VPS39-214ENST00000614932 OR4K1Q8NGD4 311 aa9.25□□□□□ -0.93
VPS39-214ENST00000614932 C15orf40Q8WUR7 153 aa9.25□□□□□ -0.93
VPS39-214ENST00000614932 S100A16Q96FQ6 103 aaKnown RBP9.25□□□□□ -0.93
VPS39-214ENST00000614932 FCRL4Q96PJ5 515 aa9.25□□□□□ -0.93
VPS39-214ENST00000614932 SF3B5Q9BWJ5 86 aaKnown RBP9.25□□□□□ -0.93
VPS39-214ENST00000614932 TMEM38AQ9H6F2 299 aa9.25□□□□□ -0.93
VPS39-214ENST00000614932 DEC1Q9P2X7 70 aa9.25□□□□□ -0.93
VPS39-214ENST00000614932 CKAP5Q14008 2032 aa9.25□□□□□ -0.93
VPS39-214ENST00000614932 TCF20Q9UGU0 1960 aaKnown RBP9.24□□□□□ -0.93
VPS39-214ENST00000614932 PRICKLE3O43900 615 aaPredicted RBP9.24□□□□□ -0.93
VPS39-214ENST00000614932 SLCO2B1O94956 709 aa9.24□□□□□ -0.93
VPS39-214ENST00000614932 AIFM1O95831 613 aa9.24□□□□□ -0.93
VPS39-214ENST00000614932 CST2P09228 141 aa9.24□□□□□ -0.93
VPS39-214ENST00000614932 MPC1LP0DKB6 136 aa9.24□□□□□ -0.93
VPS39-214ENST00000614932 PTHLHP12272 177 aa9.24□□□□□ -0.93
VPS39-214ENST00000614932 ACP5P13686 325 aa9.24□□□□□ -0.93
VPS39-214ENST00000614932 MMP11P24347 488 aa9.24□□□□□ -0.93
VPS39-214ENST00000614932 IGFALSP35858 605 aa9.24□□□□□ -0.93
VPS39-214ENST00000614932 AQP2P41181 271 aa9.24□□□□□ -0.93
VPS39-214ENST00000614932 RGS8P57771 180 aaPredicted RBP9.24□□□□□ -0.93
VPS39-214ENST00000614932 SMIM11AP58511 58 aa9.24□□□□□ -0.93
VPS39-214ENST00000614932 BTNL3Q6UXE8 466 aa9.24□□□□□ -0.93
VPS39-214ENST00000614932 MRGPREQ86SM8 312 aa9.24□□□□□ -0.93
VPS39-214ENST00000614932 SYT9Q86SS6 491 aa9.24□□□□□ -0.93
VPS39-214ENST00000614932 ZNF480Q8WV37 535 aa9.24□□□□□ -0.93
VPS39-214ENST00000614932 SMPDL3BQ92485 455 aa9.24□□□□□ -0.93
VPS39-214ENST00000614932 FGF13Q92913 245 aa9.24□□□□□ -0.93
VPS39-214ENST00000614932 ZNF845Q96IR2 970 aaPredicted RBP9.24□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms