RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 CLUP10909 449 aa13.09□□□□□ -0.31
LIG1-219ENST00000600055 GRK5P34947 590 aa13.09□□□□□ -0.31
LIG1-219ENST00000600055 UCP2P55851 309 aa13.09□□□□□ -0.31
LIG1-219ENST00000600055 SNRPD2P62316 118 aaKnown RBP13.09□□□□□ -0.31
LIG1-219ENST00000600055 TEKQ02763 1124 aa13.09□□□□□ -0.31
LIG1-219ENST00000600055 GLO1Q04760 184 aa13.09□□□□□ -0.31
LIG1-219ENST00000600055 SCRN3Q0VDG4 424 aa13.09□□□□□ -0.31
LIG1-219ENST00000600055 AQP6Q13520 282 aa13.09□□□□□ -0.31
LIG1-219ENST00000600055 RAB35Q15286 201 aa13.09□□□□□ -0.31
LIG1-219ENST00000600055 CCDC92Q53HC0 331 aaPredicted RBP13.09□□□□□ -0.31
LIG1-219ENST00000600055 TMEM236Q5W0B7 351 aa13.09□□□□□ -0.31
LIG1-219ENST00000600055 FAHD1Q6P587 224 aa13.09□□□□□ -0.31
LIG1-219ENST00000600055 CORO6Q6QEF8 472 aa13.09□□□□□ -0.31
LIG1-219ENST00000600055 VASH1Q7L8A9 365 aaPredicted RBP13.09□□□□□ -0.31
LIG1-219ENST00000600055 ALDH16A1Q8IZ83 802 aa13.09□□□□□ -0.31
LIG1-219ENST00000600055 ICA1LQ8NDH6 482 aa13.09□□□□□ -0.31
LIG1-219ENST00000600055 PROKR2Q8NFJ6 384 aa13.09□□□□□ -0.31
LIG1-219ENST00000600055 SLC7A6Q92536 515 aa13.09□□□□□ -0.31
LIG1-219ENST00000600055 MRPL24Q96A35 216 aaKnown RBP13.09□□□□□ -0.31
LIG1-219ENST00000600055 DOK1Q99704 481 aa13.09□□□□□ -0.31
LIG1-219ENST00000600055 SYT3Q9BQG1 590 aa13.09□□□□□ -0.31
LIG1-219ENST00000600055 BDH2Q9BUT1 245 aa13.09□□□□□ -0.31
LIG1-219ENST00000600055 RBM4Q9BWF3 364 aaKnown RBP13.09□□□□□ -0.31
LIG1-219ENST00000600055 MED20Q9H944 212 aa13.09□□□□□ -0.31
LIG1-219ENST00000600055 MRPL22Q9NWU5 206 aaKnown RBP13.09□□□□□ -0.31
LIG1-219ENST00000600055 PLEK2Q9NYT0 353 aa13.09□□□□□ -0.31
LIG1-219ENST00000600055 KIF17Q9P2E2 1029 aa13.09□□□□□ -0.31
LIG1-219ENST00000600055 MYEF2Q9P2K5 600 aaKnown RBP13.09□□□□□ -0.31
LIG1-219ENST00000600055 LHFPL6Q9Y693 200 aa13.09□□□□□ -0.31
LIG1-219ENST00000600055 PMF1-BGLAPU3KQ54 211 aa13.09□□□□□ -0.31
LIG1-219ENST00000600055 VPS13CQ709C8 3753 aa13.09□□□□□ -0.31
LIG1-219ENST00000600055 CELSR1Q9NYQ6 3014 aa13.09□□□□□ -0.31
LIG1-219ENST00000600055 TVP23AA6NH52 213 aa13.08□□□□□ -0.32
LIG1-219ENST00000600055 FAM183AA6NL82 134 aa13.08□□□□□ -0.32
LIG1-219ENST00000600055 RIIAD1A6NNX1 92 aa13.08□□□□□ -0.32
LIG1-219ENST00000600055 VSTM5A8MXK1 200 aa13.08□□□□□ -0.32
LIG1-219ENST00000600055 G3V2T6 193 aa13.08□□□□□ -0.32
LIG1-219ENST00000600055 SSX4O60224 188 aa13.08□□□□□ -0.32
LIG1-219ENST00000600055 MITFO75030 526 aaPredicted RBP13.08□□□□□ -0.32
LIG1-219ENST00000600055 LY6HO94772 140 aa13.08□□□□□ -0.32
LIG1-219ENST00000600055 IFNGP01579 166 aa13.08□□□□□ -0.32
LIG1-219ENST00000600055 LCKP06239 509 aa13.08□□□□□ -0.32
LIG1-219ENST00000600055 FCGR1AP12314 374 aa13.08□□□□□ -0.32
LIG1-219ENST00000600055 CD99P14209 185 aa13.08□□□□□ -0.32
LIG1-219ENST00000600055 ZNF23P17027 643 aa13.08□□□□□ -0.32
LIG1-219ENST00000600055 PCSK6P29122 969 aa13.08□□□□□ -0.32
LIG1-219ENST00000600055 HTR5AP47898 357 aa13.08□□□□□ -0.32
LIG1-219ENST00000600055 RPS23P62266 143 aaKnown RBP13.08□□□□□ -0.32
LIG1-219ENST00000600055 RGS7BPQ6MZT1 257 aaPredicted RBP13.08□□□□□ -0.32
LIG1-219ENST00000600055 SLC27A4Q6P1M0 643 aa13.08□□□□□ -0.32
LIG1-219ENST00000600055 HIPK1Q86Z02 1210 aa13.08□□□□□ -0.32
LIG1-219ENST00000600055 LINC00346Q8IVM7 164 aa13.08□□□□□ -0.32
LIG1-219ENST00000600055 ZNF101Q8IZC7 436 aa13.08□□□□□ -0.32
LIG1-219ENST00000600055 ZCCHC24Q8N2G6 241 aaKnown RBP13.08□□□□□ -0.32
LIG1-219ENST00000600055 OR10H5Q8NGA6 315 aa13.08□□□□□ -0.32
LIG1-219ENST00000600055 OR2T4Q8NH00 348 aa13.08□□□□□ -0.32
LIG1-219ENST00000600055 SORCS2Q96PQ0 1159 aa13.08□□□□□ -0.32
LIG1-219ENST00000600055 VRK1Q99986 396 aaPredicted RBP13.08□□□□□ -0.32
LIG1-219ENST00000600055 WACQ9BTA9 647 aa13.08□□□□□ -0.32
LIG1-219ENST00000600055 HCAR1Q9BXC0 346 aa13.08□□□□□ -0.32
LIG1-219ENST00000600055 NMNAT2Q9BZQ4 307 aa13.08□□□□□ -0.32
LIG1-219ENST00000600055 PAPOLBQ9NRJ5 636 aaKnown RBP13.08□□□□□ -0.32
LIG1-219ENST00000600055 CMC2Q9NRP2 79 aa13.08□□□□□ -0.32
LIG1-219ENST00000600055 PLCE1Q9P212 2302 aa13.07□□□□□ -0.32
LIG1-219ENST00000600055 ERICH4A6NGS2 130 aa13.07□□□□□ -0.32
LIG1-219ENST00000600055 H3BNX3 289 aa13.07□□□□□ -0.32
LIG1-219ENST00000600055 SYNGR3O43761 229 aa13.07□□□□□ -0.32
LIG1-219ENST00000600055 CLPTM1O96005 669 aa13.07□□□□□ -0.32
LIG1-219ENST00000600055 NGFP01138 241 aa13.07□□□□□ -0.32
LIG1-219ENST00000600055 COX5BP10606 129 aa13.07□□□□□ -0.32
LIG1-219ENST00000600055 PSKH1P11801 424 aa13.07□□□□□ -0.32
LIG1-219ENST00000600055 BMP4P12644 408 aa13.07□□□□□ -0.32
LIG1-219ENST00000600055 ZNF3P17036 446 aa13.07□□□□□ -0.32
LIG1-219ENST00000600055 SPI1P17947 270 aa13.07□□□□□ -0.32
LIG1-219ENST00000600055 GGT2P36268 569 aa13.07□□□□□ -0.32
LIG1-219ENST00000600055 RPS27P42677 84 aaKnown RBP13.07□□□□□ -0.32
LIG1-219ENST00000600055 RAD52P43351 418 aa13.07□□□□□ -0.32
LIG1-219ENST00000600055 SLC25A1P53007 311 aa13.07□□□□□ -0.32
LIG1-219ENST00000600055 HIST1H3AP68431 136 aa13.07□□□□□ -0.32
LIG1-219ENST00000600055 CDK5Q00535 292 aa13.07□□□□□ -0.32
LIG1-219ENST00000600055 MAD2L1BPQ15013 274 aaPredicted RBP13.07□□□□□ -0.32
LIG1-219ENST00000600055 CLEC12BQ2HXU8 276 aa13.07□□□□□ -0.32
LIG1-219ENST00000600055 SPATA46Q5T0L3 261 aa13.07□□□□□ -0.32
LIG1-219ENST00000600055 HIST2H3PS2Q5TEC6 136 aa13.07□□□□□ -0.32
LIG1-219ENST00000600055 CFAP77Q6ZQR2 320 aa13.07□□□□□ -0.32
LIG1-219ENST00000600055 RFPL4BQ6ZWI9 263 aa13.07□□□□□ -0.32
LIG1-219ENST00000600055 HIST2H3AQ71DI3 136 aa13.07□□□□□ -0.32
LIG1-219ENST00000600055 ZNF771Q7L3S4 317 aaPredicted RBP13.07□□□□□ -0.32
LIG1-219ENST00000600055 CIARTQ8N365 385 aaPredicted RBP13.07□□□□□ -0.32
LIG1-219ENST00000600055 ZNF511Q8NB15 262 aa13.07□□□□□ -0.32
LIG1-219ENST00000600055 OR1J1Q8NGS3 322 aa13.07□□□□□ -0.32
LIG1-219ENST00000600055 OR1F12Q8NHA8 337 aa13.07□□□□□ -0.32
LIG1-219ENST00000600055 OTULINQ96BN8 352 aa13.07□□□□□ -0.32
LIG1-219ENST00000600055 PKP2Q99959 881 aa13.07□□□□□ -0.32
LIG1-219ENST00000600055 BCL2L14Q9BZR8 327 aa13.07□□□□□ -0.32
LIG1-219ENST00000600055 EIF3KQ9UBQ5 218 aaKnown RBP13.07□□□□□ -0.32
LIG1-219ENST00000600055 DUSP13Q9UII6 198 aa13.07□□□□□ -0.32
LIG1-219ENST00000600055 OR6C6A6NF89 314 aa13.06□□□□□ -0.32
LIG1-219ENST00000600055 SAC3D1A6NKF1 404 aa13.06□□□□□ -0.32
LIG1-219ENST00000600055 ADRA2AP08913 450 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms