RNA–Protein interactions for RNA: ENST00000599322.5

LIG1-218, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-218ENST00000599322 DECR2Q9NUI1 292 aa12.15□□□□□ -0.46
LIG1-218ENST00000599322 SAMHD1Q9Y3Z3 626 aaKnown RBP12.15□□□□□ -0.46
LIG1-218ENST00000599322 A8MV72 311 aaPredicted RBP12.14□□□□□ -0.47
LIG1-218ENST00000599322 INAFM1C9JVW0 142 aa12.14□□□□□ -0.47
LIG1-218ENST00000599322 H3BSA7 217 aa12.14□□□□□ -0.47
LIG1-218ENST00000599322 HLA-DQA2P01906 255 aa12.14□□□□□ -0.47
LIG1-218ENST00000599322 T-ENOLP0DO92 83 aa12.14□□□□□ -0.47
LIG1-218ENST00000599322 CTLA4P16410 223 aa12.14□□□□□ -0.47
LIG1-218ENST00000599322 GSSP48637 474 aa12.14□□□□□ -0.47
LIG1-218ENST00000599322 CHN2P52757 468 aa12.14□□□□□ -0.47
LIG1-218ENST00000599322 FAM209AQ5JX71 171 aa12.14□□□□□ -0.47
LIG1-218ENST00000599322 ZNF774Q6NX45 483 aa12.14□□□□□ -0.47
LIG1-218ENST00000599322 LRP11Q86VZ4 500 aa12.14□□□□□ -0.47
LIG1-218ENST00000599322 PAQR4Q8N4S7 273 aaPredicted RBP12.14□□□□□ -0.47
LIG1-218ENST00000599322 NPEPL1Q8NDH3 523 aa12.14□□□□□ -0.47
LIG1-218ENST00000599322 GJC3Q8NFK1 279 aa12.14□□□□□ -0.47
LIG1-218ENST00000599322 OR5L1Q8NGL2 311 aa12.14□□□□□ -0.47
LIG1-218ENST00000599322 OR2AJ1Q8NGZ0 328 aa12.14□□□□□ -0.47
LIG1-218ENST00000599322 OR4K13Q8NH42 304 aa12.14□□□□□ -0.47
LIG1-218ENST00000599322 IPCEF1Q8WWN9 437 aaPredicted RBP12.14□□□□□ -0.47
LIG1-218ENST00000599322 C4orf45Q96LM5 186 aa12.14□□□□□ -0.47
LIG1-218ENST00000599322 SNX18Q96RF0 628 aa12.14□□□□□ -0.47
LIG1-218ENST00000599322 MDFIQ99750 246 aa12.14□□□□□ -0.47
LIG1-218ENST00000599322 WNT5BQ9H1J7 359 aa12.14□□□□□ -0.47
LIG1-218ENST00000599322 CGGBP1Q9UFW8 167 aaPredicted RBP12.14□□□□□ -0.47
LIG1-218ENST00000599322 BAIAP2Q9UQB8 552 aa12.14□□□□□ -0.47
LIG1-218ENST00000599322 LYVE1Q9Y5Y7 322 aa12.14□□□□□ -0.47
LIG1-218ENST00000599322 CDH10Q9Y6N8 788 aa12.14□□□□□ -0.47
LIG1-218ENST00000599322 AQP12BA6NM10 295 aa12.13□□□□□ -0.47
LIG1-218ENST00000599322 C17orf100A8MU93 164 aa12.13□□□□□ -0.47
LIG1-218ENST00000599322 CST1P01037 141 aa12.13□□□□□ -0.47
LIG1-218ENST00000599322 NAT2P11245 290 aa12.13□□□□□ -0.47
LIG1-218ENST00000599322 ZNF823P16415 610 aa12.13□□□□□ -0.47
LIG1-218ENST00000599322 ZNF26P17031 533 aaPredicted RBP12.13□□□□□ -0.47
LIG1-218ENST00000599322 CDKN2AP42771 156 aaKnown RBP12.13□□□□□ -0.47
LIG1-218ENST00000599322 MAGEA2P43356 314 aa12.13□□□□□ -0.47
LIG1-218ENST00000599322 PPP1CBP62140 327 aa12.13□□□□□ -0.47
LIG1-218ENST00000599322 ENDOGQ14249 297 aaKnown RBP12.13□□□□□ -0.47
LIG1-218ENST00000599322 MAD2L1BPQ15013 274 aaPredicted RBP12.13□□□□□ -0.47
LIG1-218ENST00000599322 MICAQ29983 383 aa12.13□□□□□ -0.47
LIG1-218ENST00000599322 ALKBH6Q3KRA9 238 aa12.13□□□□□ -0.47
LIG1-218ENST00000599322 PGBD2Q6P3X8 592 aa12.13□□□□□ -0.47
LIG1-218ENST00000599322 ZNF620Q6ZNG0 422 aa12.13□□□□□ -0.47
LIG1-218ENST00000599322 ZSCAN2Q7Z7L9 614 aaPredicted RBP12.13□□□□□ -0.47
LIG1-218ENST00000599322 SPATA24Q86W54 205 aa12.13□□□□□ -0.47
LIG1-218ENST00000599322 AQP12AQ8IXF9 295 aa12.13□□□□□ -0.47
LIG1-218ENST00000599322 AQP11Q8NBQ7 271 aa12.13□□□□□ -0.47
LIG1-218ENST00000599322 OR52E2Q8NGJ4 325 aa12.13□□□□□ -0.47
LIG1-218ENST00000599322 NMNAT3Q96T66 252 aa12.13□□□□□ -0.47
LIG1-218ENST00000599322 GPA33Q99795 319 aa12.13□□□□□ -0.47
LIG1-218ENST00000599322 EGLN1Q9GZT9 426 aa12.13□□□□□ -0.47
LIG1-218ENST00000599322 CHODLQ9H9P2 273 aa12.13□□□□□ -0.47
LIG1-218ENST00000599322 TBC1D23Q9NUY8 699 aa12.13□□□□□ -0.47
LIG1-218ENST00000599322 ASH2LQ9UBL3 628 aa12.13□□□□□ -0.47
LIG1-218ENST00000599322 GRIP1Q9Y3R0 1128 aa12.13□□□□□ -0.47
LIG1-218ENST00000599322 IGLV3-9A0A075B6K5 115 aa12.12□□□□□ -0.47
LIG1-218ENST00000599322 LOC100509620A0A075B734 347 aa12.12□□□□□ -0.47
LIG1-218ENST00000599322 TCRBV5S2A0A599 114 aa12.12□□□□□ -0.47
LIG1-218ENST00000599322 OR6C6A6NF89 314 aa12.12□□□□□ -0.47
LIG1-218ENST00000599322 VWC2LB2RUY7 222 aa12.12□□□□□ -0.47
LIG1-218ENST00000599322 E2F6O75461 281 aa12.12□□□□□ -0.47
LIG1-218ENST00000599322 UBOX5O94941 541 aa12.12□□□□□ -0.47
LIG1-218ENST00000599322 CLPTM1O96005 669 aa12.12□□□□□ -0.47
LIG1-218ENST00000599322 IFNGP01579 166 aa12.12□□□□□ -0.47
LIG1-218ENST00000599322 IGHV3-13P01766 116 aa12.12□□□□□ -0.47
LIG1-218ENST00000599322 HIST1H1CP16403 213 aaKnown RBP12.12□□□□□ -0.47
LIG1-218ENST00000599322 ZNF23P17027 643 aa12.12□□□□□ -0.47
LIG1-218ENST00000599322 ACHEP22303 614 aa12.12□□□□□ -0.47
LIG1-218ENST00000599322 GIFP27352 417 aa12.12□□□□□ -0.47
LIG1-218ENST00000599322 GPR6P46095 362 aaPredicted RBP12.12□□□□□ -0.47
LIG1-218ENST00000599322 RGS6P49758 472 aa12.12□□□□□ -0.47
LIG1-218ENST00000599322 ZNF81P51508 661 aa12.12□□□□□ -0.47
LIG1-218ENST00000599322 TMEM33P57088 247 aa12.12□□□□□ -0.47
LIG1-218ENST00000599322 MRPS11P82912 194 aaKnown RBP12.12□□□□□ -0.47
LIG1-218ENST00000599322 MS4A2Q01362 244 aa12.12□□□□□ -0.47
LIG1-218ENST00000599322 FLOT2Q14254 428 aa12.12□□□□□ -0.47
LIG1-218ENST00000599322 CLEC12AQ5QGZ9 265 aa12.12□□□□□ -0.47
LIG1-218ENST00000599322 RASSF6Q6ZTQ3 369 aa12.12□□□□□ -0.47
LIG1-218ENST00000599322 PTCHD4Q6ZW05 846 aa12.12□□□□□ -0.47
LIG1-218ENST00000599322 OR2T4Q8NH00 348 aa12.12□□□□□ -0.47
LIG1-218ENST00000599322 SLC25A40Q8TBP6 338 aa12.12□□□□□ -0.47
LIG1-218ENST00000599322 DCLRE1CQ96SD1 692 aaKnown RBP12.12□□□□□ -0.47
LIG1-218ENST00000599322 DIRC2Q96SL1 478 aa12.12□□□□□ -0.47
LIG1-218ENST00000599322 BTBD10Q9BSF8 475 aa12.12□□□□□ -0.47
LIG1-218ENST00000599322 CHID1Q9BWS9 393 aa12.12□□□□□ -0.47
LIG1-218ENST00000599322 BPESC1Q9GZL8 116 aa12.12□□□□□ -0.47
LIG1-218ENST00000599322 RACGAP1Q9H0H5 632 aa12.12□□□□□ -0.47
LIG1-218ENST00000599322 ZNF556Q9HAH1 456 aa12.12□□□□□ -0.47
LIG1-218ENST00000599322 RPRD1BQ9NQG5 326 aaKnown RBP12.12□□□□□ -0.47
LIG1-218ENST00000599322 TBCCD1Q9NVR7 557 aa12.12□□□□□ -0.47
LIG1-218ENST00000599322 FAM53CQ9NYF3 392 aa12.12□□□□□ -0.47
LIG1-218ENST00000599322 NKIRAS2Q9NYR9 191 aa12.12□□□□□ -0.47
LIG1-218ENST00000599322 KCNS2Q9ULS6 477 aa12.12□□□□□ -0.47
LIG1-218ENST00000599322 B9D1Q9UPM9 204 aa12.12□□□□□ -0.47
LIG1-218ENST00000599322 U3KQV3 271 aa12.12□□□□□ -0.47
LIG1-218ENST00000599322 ARFGEF3Q5TH69 2177 aa12.12□□□□□ -0.47
LIG1-218ENST00000599322 DHRS12A0PJE2 317 aa12.11□□□□□ -0.47
LIG1-218ENST00000599322 TIMM8AO60220 97 aaPredicted RBP12.11□□□□□ -0.47
LIG1-218ENST00000599322 CRLF1O75462 422 aa12.11□□□□□ -0.47
LIG1-218ENST00000599322 DNAJC8O75937 253 aaPredicted RBP12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms