RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, human

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SS18-223	ENST00000583595	CSTA	P01040	98 aa		4.03	□□□□□ -1.76
SS18-223	ENST00000583595	IFNA7	P01567	189 aa		4.03	□□□□□ -1.76
SS18-223	ENST00000583595	IGHG3	P01860	377 aa		4.03	□□□□□ -1.76
SS18-223	ENST00000583595	S100A8	P05109	93 aa		4.03	□□□□□ -1.76
SS18-223	ENST00000583595	PRSS1	P07477	247 aa		4.03	□□□□□ -1.76
SS18-223	ENST00000583595	RBP1	P09455	135 aa		4.03	□□□□□ -1.76
SS18-223	ENST00000583595	PRSS56	P0CW18	603 aa		4.03	□□□□□ -1.76
SS18-223	ENST00000583595	BCKDHA	P12694	445 aa		4.03	□□□□□ -1.76
SS18-223	ENST00000583595	SRM	P19623	302 aa		4.03	□□□□□ -1.76
SS18-223	ENST00000583595	RAB4A	P20338	218 aa		4.03	□□□□□ -1.76
SS18-223	ENST00000583595	POLR2I	P36954	125 aa	Known RBP	4.03	□□□□□ -1.76
SS18-223	ENST00000583595	NUP62	P37198	522 aa	Predicted RBP	4.03	□□□□□ -1.76
SS18-223	ENST00000583595	ETV6	P41212	452 aa		4.03	□□□□□ -1.76
SS18-223	ENST00000583595	CRYBB2	P43320	205 aa		4.03	□□□□□ -1.76
SS18-223	ENST00000583595	CSRP3	P50461	194 aa		4.03	□□□□□ -1.76
SS18-223	ENST00000583595	NUDT2	P50583	147 aa		4.03	□□□□□ -1.76
SS18-223	ENST00000583595	P2RY4	P51582	365 aa		4.03	□□□□□ -1.76
SS18-223	ENST00000583595	GPX6	P59796	221 aa		4.03	□□□□□ -1.76
SS18-223	ENST00000583595	SNAP25	P60880	206 aa		4.03	□□□□□ -1.76
SS18-223	ENST00000583595	RPL8	P62917	257 aa	Known RBP	4.03	□□□□□ -1.76
SS18-223	ENST00000583595	ADARB1	P78563	741 aa	Known RBP	4.03	□□□□□ -1.76
SS18-223	ENST00000583595	MS4A2	Q01362	244 aa		4.03	□□□□□ -1.76
SS18-223	ENST00000583595	IRF8	Q02556	426 aa		4.03	□□□□□ -1.76
SS18-223	ENST00000583595	ART3	Q13508	389 aa		4.03	□□□□□ -1.76
SS18-223	ENST00000583595	FASTK	Q14296	549 aa	Known RBP	4.03	□□□□□ -1.76
SS18-223	ENST00000583595	GRK1	Q15835	563 aa		4.03	□□□□□ -1.76
SS18-223	ENST00000583595	ZIC1	Q15915	447 aa		4.03	□□□□□ -1.76
SS18-223	ENST00000583595	KCTD19	Q17RG1	926 aa	Predicted RBP	4.03	□□□□□ -1.76
SS18-223	ENST00000583595	ZNF404	Q494X3	552 aa		4.03	□□□□□ -1.76
SS18-223	ENST00000583595	FBXO48	Q5FWF7	155 aa		4.03	□□□□□ -1.76
SS18-223	ENST00000583595	SLC22A10	Q63ZE4	541 aa		4.03	□□□□□ -1.76
SS18-223	ENST00000583595	OR8G2P	Q6IF36	304 aa		4.03	□□□□□ -1.76
SS18-223	ENST00000583595	STX19	Q8N4C7	294 aa		4.03	□□□□□ -1.76
SS18-223	ENST00000583595	C12orf29	Q8N999	325 aa		4.03	□□□□□ -1.76
SS18-223	ENST00000583595	TRPV1	Q8NER1	839 aa		4.03	□□□□□ -1.76
SS18-223	ENST00000583595	PRSS33	Q8NF86	280 aa		4.03	□□□□□ -1.76
SS18-223	ENST00000583595	OR4C5	Q8NGB2	326 aa		4.03	□□□□□ -1.76
SS18-223	ENST00000583595	OR4D9	Q8NGE8	314 aa		4.03	□□□□□ -1.76
SS18-223	ENST00000583595	OR10V1	Q8NGI7	309 aa		4.03	□□□□□ -1.76
SS18-223	ENST00000583595	C11orf45	Q8TAV5	145 aa		4.03	□□□□□ -1.76
SS18-223	ENST00000583595	C1orf54	Q8WWF1	131 aa		4.03	□□□□□ -1.76
SS18-223	ENST00000583595	CYGB	Q8WWM9	190 aa		4.03	□□□□□ -1.76
SS18-223	ENST00000583595	TCEAL3	Q969E4	200 aa		4.03	□□□□□ -1.76
SS18-223	ENST00000583595	SLC38A4	Q969I6	547 aa		4.03	□□□□□ -1.76
SS18-223	ENST00000583595	YIPF6	Q96EC8	236 aa		4.03	□□□□□ -1.76
SS18-223	ENST00000583595	MRPL48	Q96GC5	212 aa	Known RBP	4.03	□□□□□ -1.76
SS18-223	ENST00000583595	PPP1R16A	Q96I34	528 aa		4.03	□□□□□ -1.76
SS18-223	ENST00000583595	HYLS1	Q96M11	299 aa		4.03	□□□□□ -1.76
SS18-223	ENST00000583595	PRRC1	Q96M27	445 aa		4.03	□□□□□ -1.76
SS18-223	ENST00000583595	EBF4	Q9BQW3	602 aa		4.03	□□□□□ -1.76
SS18-223	ENST00000583595	SYT11	Q9BT88	431 aa		4.03	□□□□□ -1.76
SS18-223	ENST00000583595	DGCR6L	Q9BY27	220 aa		4.03	□□□□□ -1.76
SS18-223	ENST00000583595	SLIRP	Q9GZT3	109 aa	Known RBP	4.03	□□□□□ -1.76
SS18-223	ENST00000583595	NXF2	Q9GZY0	626 aa	Known RBP	4.03	□□□□□ -1.76
SS18-223	ENST00000583595	DNTTIP1	Q9H147	329 aa		4.03	□□□□□ -1.76
SS18-223	ENST00000583595	UPF3A	Q9H1J1	476 aa	Known RBP	4.03	□□□□□ -1.76
SS18-223	ENST00000583595	RHBG	Q9H310	441 aa		4.03	□□□□□ -1.76
SS18-223	ENST00000583595	PIGU	Q9H490	435 aa		4.03	□□□□□ -1.76
SS18-223	ENST00000583595	CHRAC1	Q9NRG0	131 aa		4.03	□□□□□ -1.76
SS18-223	ENST00000583595	ZNF275	Q9NSD4	429 aa	Predicted RBP	4.03	□□□□□ -1.76
SS18-223	ENST00000583595	ABCC13	Q9NSE7	274 aa		4.03	□□□□□ -1.76
SS18-223	ENST00000583595	DEPP	Q9NTK1	212 aa		4.03	□□□□□ -1.76
SS18-223	ENST00000583595	MCUB	Q9NWR8	336 aa		4.03	□□□□□ -1.76
SS18-223	ENST00000583595	MRPL22	Q9NWU5	206 aa	Known RBP	4.03	□□□□□ -1.76
SS18-223	ENST00000583595	AHSP	Q9NZD4	102 aa		4.03	□□□□□ -1.76
SS18-223	ENST00000583595	NUDT4	Q9NZJ9	180 aa		4.03	□□□□□ -1.76
SS18-223	ENST00000583595	CD274	Q9NZQ7	290 aa		4.03	□□□□□ -1.76
SS18-223	ENST00000583595	THYN1	Q9P016	225 aa		4.03	□□□□□ -1.76
SS18-223	ENST00000583595	PEF1	Q9UBV8	284 aa	Known RBP	4.03	□□□□□ -1.76
SS18-223	ENST00000583595	CTSF	Q9UBX1	484 aa		4.03	□□□□□ -1.76
SS18-223	ENST00000583595	IKZF2	Q9UKS7	526 aa		4.03	□□□□□ -1.76
SS18-223	ENST00000583595	RHBDD3	Q9Y3P4	386 aa		4.03	□□□□□ -1.76
SS18-223	ENST00000583595	PEX16	Q9Y5Y5	336 aa		4.03	□□□□□ -1.76
SS18-223	ENST00000583595	SLC22A7	Q9Y694	548 aa		4.03	□□□□□ -1.76
SS18-223	ENST00000583595	ANKRD36C	Q5JPF3	1778 aa		4.03	□□□□□ -1.76
SS18-223	ENST00000583595	RREB1	Q92766	1687 aa		4.03	□□□□□ -1.76
SS18-223	ENST00000583595	CCDC88A	Q3V6T2	1871 aa		4.03	□□□□□ -1.77
SS18-223	ENST00000583595	IGSF9B	Q9UPX0	1349 aa		4.02	□□□□□ -1.77
SS18-223	ENST00000583595	NUP188	Q5SRE5	1749 aa		4.02	□□□□□ -1.77
SS18-223	ENST00000583595	ZNF559-ZNF177	A0A0A6YYI6	481 aa	Predicted RBP	4.02	□□□□□ -1.77
SS18-223	ENST00000583595	IGHV3-38	A0A0C4DH36	116 aa		4.02	□□□□□ -1.77
SS18-223	ENST00000583595	TRBV7-9	A0A0J9YWB2	115 aa		4.02	□□□□□ -1.77
SS18-223	ENST00000583595	LOC100653049	A0A140TA62	436 aa		4.02	□□□□□ -1.77
SS18-223	ENST00000583595		A0A1W2PPV9	198 aa		4.02	□□□□□ -1.77
SS18-223	ENST00000583595	TRABD2B	A6NFA1	517 aa		4.02	□□□□□ -1.77
SS18-223	ENST00000583595	METTL15	A6NJ78	407 aa		4.02	□□□□□ -1.77
SS18-223	ENST00000583595	CLDN24	A6NM45	220 aa		4.02	□□□□□ -1.77
SS18-223	ENST00000583595	ZNF729	A6NN14	1252 aa	Predicted RBP	4.02	□□□□□ -1.77
SS18-223	ENST00000583595	MPTX1	A8MV57	137 aa		4.02	□□□□□ -1.77
SS18-223	ENST00000583595		E5RI56	91 aa		4.02	□□□□□ -1.77
SS18-223	ENST00000583595		H7C2Y5	167 aa		4.02	□□□□□ -1.77
SS18-223	ENST00000583595	P2RY10	O00398	339 aa		4.02	□□□□□ -1.77
SS18-223	ENST00000583595	AIM2	O14862	343 aa		4.02	□□□□□ -1.77
SS18-223	ENST00000583595	GPAA1	O43292	621 aa		4.02	□□□□□ -1.77
SS18-223	ENST00000583595	SGCE	O43556	437 aa		4.02	□□□□□ -1.77
SS18-223	ENST00000583595	PCDH7	O60245	1069 aa		4.02	□□□□□ -1.77
SS18-223	ENST00000583595	CST8	O60676	142 aa		4.02	□□□□□ -1.77
SS18-223	ENST00000583595	MRPS14	O60783	128 aa	Known RBP	4.02	□□□□□ -1.77
SS18-223	ENST00000583595	KRT34	O76011	436 aa		4.02	□□□□□ -1.77
SS18-223	ENST00000583595	VAPB	O95292	243 aa		4.02	□□□□□ -1.77

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