RNA–Protein interactions for RNA: ENST00000581021.5

SS18-218, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 588 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-218ENST00000581021 VRK1Q99986 396 aaPredicted RBP17.27■□□□□ 0.36
SS18-218ENST00000581021 PDP1Q9P0J1 537 aaPredicted RBP17.27■□□□□ 0.36
SS18-218ENST00000581021 F12P00748 615 aaPredicted RBP17.26■□□□□ 0.35
SS18-218ENST00000581021 RENP00797 406 aa17.26■□□□□ 0.35
SS18-218ENST00000581021 ADRA2AP08913 450 aa17.26■□□□□ 0.35
SS18-218ENST00000581021 GSTM3P21266 225 aa17.26■□□□□ 0.35
SS18-218ENST00000581021 PRKACGP22612 351 aa17.26■□□□□ 0.35
SS18-218ENST00000581021 CRABP1P29762 137 aa17.26■□□□□ 0.35
SS18-218ENST00000581021 ALDH3B1P43353 468 aa17.26■□□□□ 0.35
SS18-218ENST00000581021 GDI2P50395 445 aaKnown RBP17.26■□□□□ 0.35
SS18-218ENST00000581021 RASSF2P50749 326 aa17.26■□□□□ 0.35
SS18-218ENST00000581021 RPS23P62266 143 aaKnown RBP17.26■□□□□ 0.35
SS18-218ENST00000581021 LSM6P62312 80 aaKnown RBP17.26■□□□□ 0.35
SS18-218ENST00000581021 KRTAP1-1Q07627 177 aa17.26■□□□□ 0.35
SS18-218ENST00000581021 AQP6Q13520 282 aa17.26■□□□□ 0.35
SS18-218ENST00000581021 SLC36A3Q495N2 470 aa17.26■□□□□ 0.35
SS18-218ENST00000581021 CCDC92Q53HC0 331 aaPredicted RBP17.26■□□□□ 0.35
SS18-218ENST00000581021 LYPD4Q6UWN0 246 aa17.26■□□□□ 0.35
SS18-218ENST00000581021 SLC37A3Q8NCC5 494 aa17.26■□□□□ 0.35
SS18-218ENST00000581021 SLC7A6Q92536 515 aa17.26■□□□□ 0.35
SS18-218ENST00000581021 MRPL22Q9NWU5 206 aaKnown RBP17.26■□□□□ 0.35
SS18-218ENST00000581021 DNAJB9Q9UBS3 223 aa17.26■□□□□ 0.35
SS18-218ENST00000581021 CR1P17927 2039 aa17.26■□□□□ 0.35
SS18-218ENST00000581021 OR6C6A6NF89 314 aa17.25■□□□□ 0.35
SS18-218ENST00000581021 GNGT2O14610 69 aa17.25■□□□□ 0.35
SS18-218ENST00000581021 RER1O15258 196 aa17.25■□□□□ 0.35
SS18-218ENST00000581021 SGCEO43556 437 aa17.25■□□□□ 0.35
SS18-218ENST00000581021 SYNGR3O43761 229 aa17.25■□□□□ 0.35
SS18-218ENST00000581021 DOK2O60496 412 aa17.25■□□□□ 0.35
SS18-218ENST00000581021 ICMTO60725 284 aa17.25■□□□□ 0.35
SS18-218ENST00000581021 NGFP01138 241 aa17.25■□□□□ 0.35
SS18-218ENST00000581021 PSKH1P11801 424 aa17.25■□□□□ 0.35
SS18-218ENST00000581021 ZNF250P15622 560 aa17.25■□□□□ 0.35
SS18-218ENST00000581021 HOXB6P17509 224 aaKnown RBP17.25■□□□□ 0.35
SS18-218ENST00000581021 PYCR1P32322 319 aa17.25■□□□□ 0.35
SS18-218ENST00000581021 CENPAP49450 140 aa17.25■□□□□ 0.35
SS18-218ENST00000581021 EVX1P49640 407 aa17.25■□□□□ 0.35
SS18-218ENST00000581021 SCRN3Q0VDG4 424 aa17.25■□□□□ 0.35
SS18-218ENST00000581021 CRMP1Q14194 572 aa17.25■□□□□ 0.35
SS18-218ENST00000581021 SPATA46Q5T0L3 261 aa17.25■□□□□ 0.35
SS18-218ENST00000581021 RGS7BPQ6MZT1 257 aaPredicted RBP17.25■□□□□ 0.35
SS18-218ENST00000581021 DNM1P34Q6PK57 102 aa17.25■□□□□ 0.35
SS18-218ENST00000581021 CORO6Q6QEF8 472 aa17.25■□□□□ 0.35
SS18-218ENST00000581021 Q71RC1 249 aaPredicted RBP17.25■□□□□ 0.35
SS18-218ENST00000581021 BIVMQ86UB2 503 aa17.25■□□□□ 0.35
SS18-218ENST00000581021 GTF3AQ92664 365 aaKnown RBP17.25■□□□□ 0.35
SS18-218ENST00000581021 RBM4Q9BWF3 364 aaKnown RBP17.25■□□□□ 0.35
SS18-218ENST00000581021 REG4Q9BYZ8 158 aa17.25■□□□□ 0.35
SS18-218ENST00000581021 TPK1Q9H3S4 243 aa17.25■□□□□ 0.35
SS18-218ENST00000581021 DYNLRB1Q9NP97 96 aa17.25■□□□□ 0.35
SS18-218ENST00000581021 FKBP7Q9Y680 259 aa17.25■□□□□ 0.35
SS18-218ENST00000581021 IGLV3-9A0A075B6K5 115 aa17.24■□□□□ 0.35
SS18-218ENST00000581021 E2F6O75461 281 aa17.24■□□□□ 0.35
SS18-218ENST00000581021 LY6G6DO95868 133 aa17.24■□□□□ 0.35
SS18-218ENST00000581021 LCKP06239 509 aa17.24■□□□□ 0.35
SS18-218ENST00000581021 GGT2P36268 569 aa17.24■□□□□ 0.35
SS18-218ENST00000581021 MPV17P39210 176 aa17.24■□□□□ 0.35
SS18-218ENST00000581021 HTR5AP47898 357 aa17.24■□□□□ 0.35
SS18-218ENST00000581021 HIST1H3AP68431 136 aa17.24■□□□□ 0.35
SS18-218ENST00000581021 ALKBH6Q3KRA9 238 aa17.24■□□□□ 0.35
SS18-218ENST00000581021 HIST2H3PS2Q5TEC6 136 aa17.24■□□□□ 0.35
SS18-218ENST00000581021 C1orf146Q5VVC0 180 aa17.24■□□□□ 0.35
SS18-218ENST00000581021 HIST2H3AQ71DI3 136 aa17.24■□□□□ 0.35
SS18-218ENST00000581021 ICA1LQ8NDH6 482 aa17.24■□□□□ 0.35
SS18-218ENST00000581021 OR2T33Q8NG76 320 aa17.24■□□□□ 0.35
SS18-218ENST00000581021 OR9Q1Q8NGQ5 310 aa17.24■□□□□ 0.35
SS18-218ENST00000581021 OR1J1Q8NGS3 322 aa17.24■□□□□ 0.35
SS18-218ENST00000581021 C10orf105Q8TEF2 133 aa17.24■□□□□ 0.35
SS18-218ENST00000581021 WACQ9BTA9 647 aa17.24■□□□□ 0.35
SS18-218ENST00000581021 NMNAT2Q9BZQ4 307 aa17.24■□□□□ 0.35
SS18-218ENST00000581021 MMADHCQ9H3L0 296 aaPredicted RBP17.24■□□□□ 0.35
SS18-218ENST00000581021 POFUT1Q9H488 388 aa17.24■□□□□ 0.35
SS18-218ENST00000581021 DUSP13Q9UII6 198 aa17.24■□□□□ 0.35
SS18-218ENST00000581021 VSTM5A8MXK1 200 aa17.23■□□□□ 0.35
SS18-218ENST00000581021 M0R233 179 aa17.23■□□□□ 0.35
SS18-218ENST00000581021 DBHP09172 617 aa17.23■□□□□ 0.35
SS18-218ENST00000581021 CLUP10909 449 aa17.23■□□□□ 0.35
SS18-218ENST00000581021 RAD52P43351 418 aa17.23■□□□□ 0.35
SS18-218ENST00000581021 COX10Q12887 443 aa17.23■□□□□ 0.35
SS18-218ENST00000581021 CLEC2AQ6UVW9 174 aa17.23■□□□□ 0.35
SS18-218ENST00000581021 CFAP77Q6ZQR2 320 aa17.23■□□□□ 0.35
SS18-218ENST00000581021 LINC00346Q8IVM7 164 aa17.23■□□□□ 0.35
SS18-218ENST00000581021 ALDH16A1Q8IZ83 802 aa17.23■□□□□ 0.35
SS18-218ENST00000581021 OR51L1Q8NGJ5 315 aa17.23■□□□□ 0.35
SS18-218ENST00000581021 ABHD4Q8TB40 342 aa17.23■□□□□ 0.35
SS18-218ENST00000581021 MARS2Q96GW9 593 aaKnown RBP17.23■□□□□ 0.35
SS18-218ENST00000581021 HCAR1Q9BXC0 346 aa17.23■□□□□ 0.35
SS18-218ENST00000581021 BCL2L14Q9BZR8 327 aa17.23■□□□□ 0.35
SS18-218ENST00000581021 YY1AP1Q9H869 796 aa17.23■□□□□ 0.35
SS18-218ENST00000581021 PLEK2Q9NYT0 353 aa17.23■□□□□ 0.35
SS18-218ENST00000581021 ANK3Q12955 4377 aaKnown RBP17.23■□□□□ 0.35
SS18-218ENST00000581021 FN1P02751 2386 aaKnown RBP17.23■□□□□ 0.35
SS18-218ENST00000581021 GYPBP06028 91 aa17.22■□□□□ 0.35
SS18-218ENST00000581021 COX5BP10606 129 aa17.22■□□□□ 0.35
SS18-218ENST00000581021 NAT2P11245 290 aa17.22■□□□□ 0.35
SS18-218ENST00000581021 TEKQ02763 1124 aa17.22■□□□□ 0.35
SS18-218ENST00000581021 GLO1Q04760 184 aa17.22■□□□□ 0.35
SS18-218ENST00000581021 SLC18B1Q6NT16 456 aa17.22■□□□□ 0.35
SS18-218ENST00000581021 SHQ1Q6PI26 577 aaKnown RBP17.22■□□□□ 0.35
SS18-218ENST00000581021 CLEC9AQ6UXN8 241 aa17.22■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms