RNA–Protein interactions for RNA: ENST00000577572.5

SS18-206, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 510 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-206ENST00000577572 OPRL1P41146 370 aa13.41□□□□□ -0.26
SS18-206ENST00000577572 RIDAP52758 137 aaKnown RBP13.41□□□□□ -0.26
SS18-206ENST00000577572 HCCSP53701 268 aa13.41□□□□□ -0.26
SS18-206ENST00000577572 SIRPAP78324 504 aa13.41□□□□□ -0.26
SS18-206ENST00000577572 DBPQ10586 325 aaPredicted RBP13.41□□□□□ -0.26
SS18-206ENST00000577572 FOXF2Q12947 444 aa13.41□□□□□ -0.26
SS18-206ENST00000577572 TRAM1Q15629 374 aa13.41□□□□□ -0.26
SS18-206ENST00000577572 MEP1BQ16820 701 aa13.41□□□□□ -0.26
SS18-206ENST00000577572 TIMM50Q3ZCQ8 353 aa13.41□□□□□ -0.26
SS18-206ENST00000577572 OR2G6Q5TZ20 316 aa13.41□□□□□ -0.26
SS18-206ENST00000577572 RPL22L1Q6P5R6 122 aaKnown RBP13.41□□□□□ -0.26
SS18-206ENST00000577572 SSX8Q7RTT4 187 aa13.41□□□□□ -0.26
SS18-206ENST00000577572 SSX6Q7RTT6 188 aa13.41□□□□□ -0.26
SS18-206ENST00000577572 BTLAQ7Z6A9 289 aa13.41□□□□□ -0.26
SS18-206ENST00000577572 KRT77Q7Z794 578 aa13.41□□□□□ -0.26
SS18-206ENST00000577572 ZNF420Q8TAQ5 688 aaPredicted RBP13.41□□□□□ -0.26
SS18-206ENST00000577572 GATAD2BQ8WXI9 593 aa13.41□□□□□ -0.26
SS18-206ENST00000577572 NANOS1Q8WY41 292 aaKnown RBP13.41□□□□□ -0.26
SS18-206ENST00000577572 RND1Q92730 232 aa13.41□□□□□ -0.26
SS18-206ENST00000577572 UFD1Q92890 307 aa13.41□□□□□ -0.26
SS18-206ENST00000577572 C4orf36Q96KX1 117 aa13.41□□□□□ -0.26
SS18-206ENST00000577572 FOXN4Q96NZ1 517 aa13.41□□□□□ -0.26
SS18-206ENST00000577572 HDHD5Q9BXW7 423 aa13.41□□□□□ -0.26
SS18-206ENST00000577572 HDHD2Q9H0R4 259 aa13.41□□□□□ -0.26
SS18-206ENST00000577572 EMC7Q9NPA0 242 aa13.41□□□□□ -0.26
SS18-206ENST00000577572 OBP2BQ9NPH6 170 aa13.41□□□□□ -0.26
SS18-206ENST00000577572 PRSS50Q9UI38 385 aa13.41□□□□□ -0.26
SS18-206ENST00000577572 TINAGQ9UJW2 476 aa13.41□□□□□ -0.26
SS18-206ENST00000577572 FBXL3Q9UKT7 428 aa13.41□□□□□ -0.26
SS18-206ENST00000577572 KLHDC2Q9Y2U9 406 aa13.41□□□□□ -0.26
SS18-206ENST00000577572 MEMO1Q9Y316 297 aa13.41□□□□□ -0.26
SS18-206ENST00000577572 GTF3C1Q12789 2109 aa13.4□□□□□ -0.26
SS18-206ENST00000577572 OGG1O15527 345 aa13.4□□□□□ -0.26
SS18-206ENST00000577572 UBL3O95164 117 aa13.4□□□□□ -0.26
SS18-206ENST00000577572 IGHV3-9P01782 118 aa13.4□□□□□ -0.26
SS18-206ENST00000577572 COX5BP10606 129 aa13.4□□□□□ -0.26
SS18-206ENST00000577572 EDNRAP25101 427 aa13.4□□□□□ -0.26
SS18-206ENST00000577572 ARR3P36575 388 aa13.4□□□□□ -0.26
SS18-206ENST00000577572 RGS6P49758 472 aa13.4□□□□□ -0.26
SS18-206ENST00000577572 CCR9P51686 369 aa13.4□□□□□ -0.26
SS18-206ENST00000577572 OR12D2P58182 307 aa13.4□□□□□ -0.26
SS18-206ENST00000577572 GRB2P62993 217 aaKnown RBP13.4□□□□□ -0.26
SS18-206ENST00000577572 PMPCAQ10713 525 aa13.4□□□□□ -0.26
SS18-206ENST00000577572 LIPNQ5VXI9 398 aa13.4□□□□□ -0.26
SS18-206ENST00000577572 MTFR2Q6P444 385 aa13.4□□□□□ -0.26
SS18-206ENST00000577572 VWA1Q6PCB0 445 aa13.4□□□□□ -0.26
SS18-206ENST00000577572 GDPGP1Q6ZNW5 385 aa13.4□□□□□ -0.26
SS18-206ENST00000577572 SLC16A14Q7RTX9 510 aa13.4□□□□□ -0.26
SS18-206ENST00000577572 MRGPRGQ86SM5 289 aa13.4□□□□□ -0.26
SS18-206ENST00000577572 HIST2H2ABQ8IUE6 130 aaPredicted RBP13.4□□□□□ -0.26
SS18-206ENST00000577572 GALNT11Q8NCW6 608 aa13.4□□□□□ -0.26
SS18-206ENST00000577572 OR1K1Q8NGR3 316 aa13.4□□□□□ -0.26
SS18-206ENST00000577572 RPS4Y2Q8TD47 263 aa13.4□□□□□ -0.26
SS18-206ENST00000577572 BCL2L2Q92843 193 aaPredicted RBP13.4□□□□□ -0.26
SS18-206ENST00000577572 SLAMF6Q96DU3 332 aa13.4□□□□□ -0.26
SS18-206ENST00000577572 PELI1Q96FA3 418 aa13.4□□□□□ -0.26
SS18-206ENST00000577572 MAP6Q96JE9 813 aa13.4□□□□□ -0.26
SS18-206ENST00000577572 OPALINQ96PE5 141 aa13.4□□□□□ -0.26
SS18-206ENST00000577572 COQ7Q99807 217 aa13.4□□□□□ -0.26
SS18-206ENST00000577572 ISG20L2Q9H9L3 353 aaKnown RBP13.4□□□□□ -0.26
SS18-206ENST00000577572 GALNT8Q9NY28 637 aa13.4□□□□□ -0.26
SS18-206ENST00000577572 MRM2Q9UI43 246 aaKnown RBP13.4□□□□□ -0.26
SS18-206ENST00000577572 GNG8Q9UK08 70 aa13.4□□□□□ -0.26
SS18-206ENST00000577572 IKZF2Q9UKS7 526 aa13.4□□□□□ -0.26
SS18-206ENST00000577572 BSNQ9UPA5 3926 aa13.39□□□□□ -0.27
SS18-206ENST00000577572 DPPA5A6NC42 116 aa13.39□□□□□ -0.27
SS18-206ENST00000577572 DVL2O14641 736 aa13.39□□□□□ -0.27
SS18-206ENST00000577572 PLPP2O43688 288 aa13.39□□□□□ -0.27
SS18-206ENST00000577572 GPRIN2O60269 458 aa13.39□□□□□ -0.27
SS18-206ENST00000577572 ITGA5P08648 1049 aa13.39□□□□□ -0.27
SS18-206ENST00000577572 H2BFMP0C1H6 154 aa13.39□□□□□ -0.27
SS18-206ENST00000577572 HSMCR30P0CW71 290 aa13.39□□□□□ -0.27
SS18-206ENST00000577572 B4GALT1P15291 398 aa13.39□□□□□ -0.27
SS18-206ENST00000577572 MMP16P51512 607 aa13.39□□□□□ -0.27
SS18-206ENST00000577572 TMBIM6P55061 237 aa13.39□□□□□ -0.27
SS18-206ENST00000577572 RAB35Q15286 201 aa13.39□□□□□ -0.27
SS18-206ENST00000577572 ELFN2Q5R3F8 820 aa13.39□□□□□ -0.27
SS18-206ENST00000577572 ZSCAN2Q7Z7L9 614 aaPredicted RBP13.39□□□□□ -0.27
SS18-206ENST00000577572 SATL1Q86VE3 508 aa13.39□□□□□ -0.27
SS18-206ENST00000577572 P2RY8Q86VZ1 359 aa13.39□□□□□ -0.27
SS18-206ENST00000577572 ANKRD13BQ86YJ7 626 aa13.39□□□□□ -0.27
SS18-206ENST00000577572 KLBQ86Z14 1044 aa13.39□□□□□ -0.27
SS18-206ENST00000577572 ALDH16A1Q8IZ83 802 aa13.39□□□□□ -0.27
SS18-206ENST00000577572 MS4A15Q8N5U1 240 aa13.39□□□□□ -0.27
SS18-206ENST00000577572 RFLNBQ8N5W9 214 aa13.39□□□□□ -0.27
SS18-206ENST00000577572 YIPF7Q8N8F6 280 aa13.39□□□□□ -0.27
SS18-206ENST00000577572 NAXEQ8NCW5 288 aa13.39□□□□□ -0.27
SS18-206ENST00000577572 SMAP2Q8WU79 429 aaPredicted RBP13.39□□□□□ -0.27
SS18-206ENST00000577572 YIPF6Q96EC8 236 aa13.39□□□□□ -0.27
SS18-206ENST00000577572 FBXO17Q96EF6 278 aa13.39□□□□□ -0.27
SS18-206ENST00000577572 OR10A4Q9H209 315 aa13.39□□□□□ -0.27
SS18-206ENST00000577572 MOB1AQ9H8S9 216 aa13.39□□□□□ -0.27
SS18-206ENST00000577572 ELOVL3Q9HB03 270 aa13.39□□□□□ -0.27
SS18-206ENST00000577572 NDUFB11Q9NX14 153 aa13.39□□□□□ -0.27
SS18-206ENST00000577572 ELOVL5Q9NYP7 299 aa13.39□□□□□ -0.27
SS18-206ENST00000577572 BOD1L1Q8NFC6 3051 aa13.39□□□□□ -0.27
SS18-206ENST00000577572 TRGV8A0A0C4DH27 118 aa13.38□□□□□ -0.27
SS18-206ENST00000577572 A0A1B0GUH1 482 aa13.38□□□□□ -0.27
SS18-206ENST00000577572 A8MXE2 369 aa13.38□□□□□ -0.27
SS18-206ENST00000577572 MMP7P09237 267 aaPredicted RBP13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms