RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 TLX2O43763 284 aaPredicted RBP6.96□□□□□ -1.3
VPS53-214ENST00000572607 CD5LO43866 347 aa6.96□□□□□ -1.3
VPS53-214ENST00000572607 SLC16A7O60669 478 aa6.96□□□□□ -1.3
VPS53-214ENST00000572607 CCNB2O95067 398 aa6.96□□□□□ -1.3
VPS53-214ENST00000572607 PPP1R3DO95685 299 aa6.96□□□□□ -1.3
VPS53-214ENST00000572607 ATP6V1B2P21281 511 aa6.96□□□□□ -1.3
VPS53-214ENST00000572607 APEX1P27695 318 aaKnown RBP6.96□□□□□ -1.3
VPS53-214ENST00000572607 CRABP1P29762 137 aa6.96□□□□□ -1.3
VPS53-214ENST00000572607 ALDH3B1P43353 468 aa6.96□□□□□ -1.3
VPS53-214ENST00000572607 UCP2P55851 309 aa6.96□□□□□ -1.3
VPS53-214ENST00000572607 KLF3P57682 345 aaPredicted RBP6.96□□□□□ -1.3
VPS53-214ENST00000572607 PSG4Q00888 419 aa6.96□□□□□ -1.3
VPS53-214ENST00000572607 AQP6Q13520 282 aa6.96□□□□□ -1.3
VPS53-214ENST00000572607 FHL1Q13642 323 aa6.96□□□□□ -1.3
VPS53-214ENST00000572607 TMEM249Q2WGJ8 235 aa6.96□□□□□ -1.3
VPS53-214ENST00000572607 DNAL1Q4LDG9 190 aa6.96□□□□□ -1.3
VPS53-214ENST00000572607 RPL13AP3Q6NVV1 102 aa6.96□□□□□ -1.3
VPS53-214ENST00000572607 PGM2L1Q6PCE3 622 aa6.96□□□□□ -1.3
VPS53-214ENST00000572607 RINLQ6ZS11 566 aa6.96□□□□□ -1.3
VPS53-214ENST00000572607 FOXL2NBQ6ZUU3 175 aa6.96□□□□□ -1.3
VPS53-214ENST00000572607 TRPM8Q7Z2W7 1104 aa6.96□□□□□ -1.3
VPS53-214ENST00000572607 FAM122BQ7Z309 247 aa6.96□□□□□ -1.3
VPS53-214ENST00000572607 ZER1Q7Z7L7 766 aa6.96□□□□□ -1.3
VPS53-214ENST00000572607 GLB1L2Q8IW92 636 aa6.96□□□□□ -1.3
VPS53-214ENST00000572607 OR1J1Q8NGS3 322 aa6.96□□□□□ -1.3
VPS53-214ENST00000572607 AKR7LQ8NHP1 331 aa6.96□□□□□ -1.3
VPS53-214ENST00000572607 SPATA3Q8NHX4 192 aa6.96□□□□□ -1.3
VPS53-214ENST00000572607 UBASH3BQ8TF42 649 aa6.96□□□□□ -1.3
VPS53-214ENST00000572607 CCDC124Q96CT7 223 aaKnown RBP6.96□□□□□ -1.3
VPS53-214ENST00000572607 ASB9Q96DX5 294 aa6.96□□□□□ -1.3
VPS53-214ENST00000572607 THTPAQ9BU02 230 aa6.96□□□□□ -1.3
VPS53-214ENST00000572607 ZNF416Q9BWM5 594 aa6.96□□□□□ -1.3
VPS53-214ENST00000572607 OR2H1Q9GZK4 316 aa6.96□□□□□ -1.3
VPS53-214ENST00000572607 C1orf21Q9H246 121 aa6.96□□□□□ -1.3
VPS53-214ENST00000572607 OR52D1Q9H346 318 aa6.96□□□□□ -1.3
VPS53-214ENST00000572607 REEP1Q9H902 201 aa6.96□□□□□ -1.3
VPS53-214ENST00000572607 ELOVL3Q9HB03 270 aa6.96□□□□□ -1.3
VPS53-214ENST00000572607 EMC7Q9NPA0 242 aa6.96□□□□□ -1.3
VPS53-214ENST00000572607 YAE1D1Q9NRH1 226 aa6.96□□□□□ -1.3
VPS53-214ENST00000572607 VSX1Q9NZR4 365 aaPredicted RBP6.96□□□□□ -1.3
VPS53-214ENST00000572607 TAAR3PQ9P1P4 343 aa6.96□□□□□ -1.3
VPS53-214ENST00000572607 FZR1Q9UM11 496 aa6.96□□□□□ -1.3
VPS53-214ENST00000572607 SONP18583 2426 aaKnown RBP6.95□□□□□ -1.3
VPS53-214ENST00000572607 A8MV72 311 aaPredicted RBP6.95□□□□□ -1.3
VPS53-214ENST00000572607 ARPC3O15145 178 aa6.95□□□□□ -1.3
VPS53-214ENST00000572607 GYG2O15488 501 aa6.95□□□□□ -1.3
VPS53-214ENST00000572607 TPD52L2O43399 206 aaKnown RBP6.95□□□□□ -1.3
VPS53-214ENST00000572607 SGCEO43556 437 aa6.95□□□□□ -1.3
VPS53-214ENST00000572607 IDH3BO43837 385 aa6.95□□□□□ -1.3
VPS53-214ENST00000572607 DOK2O60496 412 aa6.95□□□□□ -1.3
VPS53-214ENST00000572607 TXNDC12O95881 172 aa6.95□□□□□ -1.3
VPS53-214ENST00000572607 COX5BP10606 129 aa6.95□□□□□ -1.3
VPS53-214ENST00000572607 CTLA4P16410 223 aa6.95□□□□□ -1.3
VPS53-214ENST00000572607 ZNF26P17031 533 aaPredicted RBP6.95□□□□□ -1.3
VPS53-214ENST00000572607 NR4A2P43354 598 aa6.95□□□□□ -1.3
VPS53-214ENST00000572607 MAGEA2P43356 314 aa6.95□□□□□ -1.3
VPS53-214ENST00000572607 HTR5AP47898 357 aa6.95□□□□□ -1.3
VPS53-214ENST00000572607 GSSP48637 474 aa6.95□□□□□ -1.3
VPS53-214ENST00000572607 GZMKP49863 264 aa6.95□□□□□ -1.3
VPS53-214ENST00000572607 TSPAN31Q12999 210 aa6.95□□□□□ -1.3
VPS53-214ENST00000572607 ENDOGQ14249 297 aaKnown RBP6.95□□□□□ -1.3
VPS53-214ENST00000572607 GK3PQ14409 553 aa6.95□□□□□ -1.3
VPS53-214ENST00000572607 MAD2L1BPQ15013 274 aaPredicted RBP6.95□□□□□ -1.3
VPS53-214ENST00000572607 PCGF3Q3KNV8 242 aa6.95□□□□□ -1.3
VPS53-214ENST00000572607 ALKBH6Q3KRA9 238 aa6.95□□□□□ -1.3
VPS53-214ENST00000572607 ZNF718Q3SXZ3 478 aa6.95□□□□□ -1.3
VPS53-214ENST00000572607 SLC36A3Q495N2 470 aa6.95□□□□□ -1.3
VPS53-214ENST00000572607 CYB5R2Q6BCY4 276 aa6.95□□□□□ -1.3
VPS53-214ENST00000572607 ZNF774Q6NX45 483 aa6.95□□□□□ -1.3
VPS53-214ENST00000572607 C1orf94Q6P1W5 598 aa6.95□□□□□ -1.3
VPS53-214ENST00000572607 PGBD2Q6P3X8 592 aa6.95□□□□□ -1.3
VPS53-214ENST00000572607 LEG1Q6P5S2 330 aa6.95□□□□□ -1.3
VPS53-214ENST00000572607 TMEM154Q6P9G4 183 aa6.95□□□□□ -1.3
VPS53-214ENST00000572607 LRP11Q86VZ4 500 aa6.95□□□□□ -1.3
VPS53-214ENST00000572607 ZNF786Q8N393 782 aa6.95□□□□□ -1.3
VPS53-214ENST00000572607 PAQR4Q8N4S7 273 aaPredicted RBP6.95□□□□□ -1.3
VPS53-214ENST00000572607 NPEPL1Q8NDH3 523 aa6.95□□□□□ -1.3
VPS53-214ENST00000572607 CPEB3Q8NE35 698 aaKnown RBP6.95□□□□□ -1.3
VPS53-214ENST00000572607 ABHD4Q8TB40 342 aa6.95□□□□□ -1.3
VPS53-214ENST00000572607 POM121L2Q96KW2 1035 aa6.95□□□□□ -1.3
VPS53-214ENST00000572607 SAMD8Q96LT4 415 aa6.95□□□□□ -1.3
VPS53-214ENST00000572607 COG8Q96MW5 612 aa6.95□□□□□ -1.3
VPS53-214ENST00000572607 FOXN4Q96NZ1 517 aa6.95□□□□□ -1.3
VPS53-214ENST00000572607 FUZQ9BT04 418 aa6.95□□□□□ -1.3
VPS53-214ENST00000572607 WNT5BQ9H1J7 359 aa6.95□□□□□ -1.3
VPS53-214ENST00000572607 HINT3Q9NQE9 182 aaKnown RBP6.95□□□□□ -1.3
VPS53-214ENST00000572607 TBC1D23Q9NUY8 699 aa6.95□□□□□ -1.3
VPS53-214ENST00000572607 FRRS1LQ9P0K9 344 aa6.95□□□□□ -1.3
VPS53-214ENST00000572607 ASH2LQ9UBL3 628 aa6.95□□□□□ -1.3
VPS53-214ENST00000572607 COA3Q9Y2R0 106 aaPredicted RBP6.95□□□□□ -1.3
VPS53-214ENST00000572607 LYVE1Q9Y5Y7 322 aa6.95□□□□□ -1.3
VPS53-214ENST00000572607 CDH10Q9Y6N8 788 aa6.95□□□□□ -1.3
VPS53-214ENST00000572607 PLCE1Q9P212 2302 aa6.95□□□□□ -1.3
VPS53-214ENST00000572607 HIVEP2P31629 2446 aa6.95□□□□□ -1.3
VPS53-214ENST00000572607 IGLV3-9A0A075B6K5 115 aa6.94□□□□□ -1.3
VPS53-214ENST00000572607 TCRBV5S2A0A599 114 aa6.94□□□□□ -1.3
VPS53-214ENST00000572607 PLSCR5A0PG75 271 aa6.94□□□□□ -1.3
VPS53-214ENST00000572607 C17orf100A8MU93 164 aa6.94□□□□□ -1.3
VPS53-214ENST00000572607 H3BSA7 217 aa6.94□□□□□ -1.3
VPS53-214ENST00000572607 GNGT2O14610 69 aa6.94□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms