RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 SHBGP04278 402 aa9.69□□□□□ -0.86
CLK3-222ENST00000568232 IGLL1P15814 213 aa9.69□□□□□ -0.86
CLK3-222ENST00000568232 PMELP40967 661 aa9.69□□□□□ -0.86
CLK3-222ENST00000568232 ARHGDIAP52565 204 aa9.69□□□□□ -0.86
CLK3-222ENST00000568232 EFNB2P52799 333 aa9.69□□□□□ -0.86
CLK3-222ENST00000568232 CLNS1AP54105 237 aaKnown RBP9.69□□□□□ -0.86
CLK3-222ENST00000568232 OR1Q1Q15612 314 aa9.69□□□□□ -0.86
CLK3-222ENST00000568232 SGCAQ16586 387 aa9.69□□□□□ -0.86
CLK3-222ENST00000568232 DPY19L1Q2PZI1 675 aa9.69□□□□□ -0.86
CLK3-222ENST00000568232 GTDC1Q4AE62 458 aa9.69□□□□□ -0.86
CLK3-222ENST00000568232 FAM91A1Q658Y4 838 aa9.69□□□□□ -0.86
CLK3-222ENST00000568232 MOGAT3Q86VF5 341 aa9.69□□□□□ -0.86
CLK3-222ENST00000568232 OR5AS1Q8N127 324 aa9.69□□□□□ -0.86
CLK3-222ENST00000568232 CNPY4Q8N129 248 aa9.69□□□□□ -0.86
CLK3-222ENST00000568232 GALNT4Q8N4A0 578 aa9.69□□□□□ -0.86
CLK3-222ENST00000568232 KLHDC1Q8N7A1 406 aa9.69□□□□□ -0.86
CLK3-222ENST00000568232 PPP1R35Q8TAP8 253 aa9.69□□□□□ -0.86
CLK3-222ENST00000568232 MAL2Q969L2 176 aa9.69□□□□□ -0.86
CLK3-222ENST00000568232 SLC35B4Q969S0 331 aa9.69□□□□□ -0.86
CLK3-222ENST00000568232 MEGF10Q96KG7 1140 aa9.69□□□□□ -0.86
CLK3-222ENST00000568232 TECTBQ96PL2 329 aa9.69□□□□□ -0.86
CLK3-222ENST00000568232 OR2H1Q9GZK4 316 aa9.69□□□□□ -0.86
CLK3-222ENST00000568232 SLC17A7Q9P2U7 560 aa9.69□□□□□ -0.86
CLK3-222ENST00000568232 FAM96BQ9Y3D0 163 aa9.69□□□□□ -0.86
CLK3-222ENST00000568232 UGT2A1Q9Y4X1 527 aa9.69□□□□□ -0.86
CLK3-222ENST00000568232 ICMTO60725 284 aa9.68□□□□□ -0.86
CLK3-222ENST00000568232 CH25HO95992 272 aa9.68□□□□□ -0.86
CLK3-222ENST00000568232 FAM153BP0C7A2 387 aa9.68□□□□□ -0.86
CLK3-222ENST00000568232 KITLGP21583 273 aa9.68□□□□□ -0.86
CLK3-222ENST00000568232 CDH12P55289 794 aa9.68□□□□□ -0.86
CLK3-222ENST00000568232 ARF6P62330 175 aa9.68□□□□□ -0.86
CLK3-222ENST00000568232 MRPS34P82930 218 aaKnown RBP9.68□□□□□ -0.86
CLK3-222ENST00000568232 PRB3Q04118 309 aaPredicted RBP9.68□□□□□ -0.86
CLK3-222ENST00000568232 ZBTB37Q5TC79 503 aa9.68□□□□□ -0.86
CLK3-222ENST00000568232 METTL11BQ5VVY1 283 aa9.68□□□□□ -0.86
CLK3-222ENST00000568232 PTOV1Q86YD1 416 aa9.68□□□□□ -0.86
CLK3-222ENST00000568232 OR4S1Q8NGB4 309 aa9.68□□□□□ -0.86
CLK3-222ENST00000568232 VANGL1Q8TAA9 524 aaPredicted RBP9.68□□□□□ -0.86
CLK3-222ENST00000568232 VPS33AQ96AX1 596 aa9.68□□□□□ -0.86
CLK3-222ENST00000568232 R3HDM4Q96D70 268 aa9.68□□□□□ -0.86
CLK3-222ENST00000568232 MRPL13Q9BYD1 178 aaKnown RBP9.68□□□□□ -0.86
CLK3-222ENST00000568232 ELOVL3Q9HB03 270 aa9.68□□□□□ -0.86
CLK3-222ENST00000568232 GAR1Q9NY12 217 aaKnown RBP9.68□□□□□ -0.86
CLK3-222ENST00000568232 SELENONQ9NZV5 590 aa9.68□□□□□ -0.86
CLK3-222ENST00000568232 ZNRD1Q9P1U0 126 aa9.68□□□□□ -0.86
CLK3-222ENST00000568232 CTSZQ9UBR2 303 aa9.68□□□□□ -0.86
CLK3-222ENST00000568232 BTBD17A6NE02 478 aa9.67□□□□□ -0.86
CLK3-222ENST00000568232 RNASEK-C17orf49H0YIS7 233 aa9.67□□□□□ -0.86
CLK3-222ENST00000568232 IFNL4K9M1U5 179 aa9.67□□□□□ -0.86
CLK3-222ENST00000568232 RFXANKO14593 260 aa9.67□□□□□ -0.86
CLK3-222ENST00000568232 ITM2AO43736 263 aa9.67□□□□□ -0.86
CLK3-222ENST00000568232 MT-ATP6P00846 226 aa9.67□□□□□ -0.86
CLK3-222ENST00000568232 H2AFXP16104 143 aaPredicted RBP9.67□□□□□ -0.86
CLK3-222ENST00000568232 GSTM3P21266 225 aa9.67□□□□□ -0.86
CLK3-222ENST00000568232 EPHA3P29320 983 aa9.67□□□□□ -0.86
CLK3-222ENST00000568232 PSMB10P40306 273 aa9.67□□□□□ -0.86
CLK3-222ENST00000568232 KRTAP10-11P60412 298 aa9.67□□□□□ -0.86
CLK3-222ENST00000568232 FMODQ06828 376 aa9.67□□□□□ -0.86
CLK3-222ENST00000568232 C10orf128Q5T292 105 aa9.67□□□□□ -0.86
CLK3-222ENST00000568232 DCDC5Q6ZRR9 648 aa9.67□□□□□ -0.86
CLK3-222ENST00000568232 NUDCD3Q8IVD9 361 aa9.67□□□□□ -0.86
CLK3-222ENST00000568232 NOXO1Q8NFA2 376 aa9.67□□□□□ -0.86
CLK3-222ENST00000568232 NSMAFQ92636 917 aa9.67□□□□□ -0.86
CLK3-222ENST00000568232 HAVCR1Q96D42 359 aa9.67□□□□□ -0.86
CLK3-222ENST00000568232 TMEM43Q9BTV4 400 aa9.67□□□□□ -0.86
CLK3-222ENST00000568232 MEAF6Q9HAF1 191 aa9.67□□□□□ -0.86
CLK3-222ENST00000568232 TPT1P8Q9HAU6 139 aa9.67□□□□□ -0.86
CLK3-222ENST00000568232 TMEM27Q9HBJ8 222 aa9.67□□□□□ -0.86
CLK3-222ENST00000568232 BCL2L10Q9HD36 194 aa9.67□□□□□ -0.86
CLK3-222ENST00000568232 MKS1Q9NXB0 559 aa9.67□□□□□ -0.86
CLK3-222ENST00000568232 TMCC3Q9ULS5 477 aa9.67□□□□□ -0.86
CLK3-222ENST00000568232 STARD10Q9Y365 291 aa9.67□□□□□ -0.86
CLK3-222ENST00000568232 A0A1W2PRD5 423 aa9.66□□□□□ -0.86
CLK3-222ENST00000568232 A0A1W2PRF3 423 aa9.66□□□□□ -0.86
CLK3-222ENST00000568232 A0A1W2PRM7 423 aa9.66□□□□□ -0.86
CLK3-222ENST00000568232 TMEM247A6NEH6 219 aa9.66□□□□□ -0.86
CLK3-222ENST00000568232 F5H5P2 479 aa9.66□□□□□ -0.86
CLK3-222ENST00000568232 TRMUO75648 421 aaKnown RBP9.66□□□□□ -0.86
CLK3-222ENST00000568232 ABHD16AO95870 558 aa9.66□□□□□ -0.86
CLK3-222ENST00000568232 F13BP05160 661 aa9.66□□□□□ -0.86
CLK3-222ENST00000568232 LIPFP07098 398 aa9.66□□□□□ -0.86
CLK3-222ENST00000568232 ALDOCP09972 364 aaKnown RBP9.66□□□□□ -0.86
CLK3-222ENST00000568232 VSIG10L2P0DP72 767 aa9.66□□□□□ -0.86
CLK3-222ENST00000568232 CD28P10747 220 aa9.66□□□□□ -0.86
CLK3-222ENST00000568232 LAP3P28838 519 aa9.66□□□□□ -0.86
CLK3-222ENST00000568232 PRKAR1BP31321 381 aa9.66□□□□□ -0.86
CLK3-222ENST00000568232 MSX2P35548 267 aaPredicted RBP9.66□□□□□ -0.86
CLK3-222ENST00000568232 ZNF74Q16587 644 aa9.66□□□□□ -0.86
CLK3-222ENST00000568232 CD276Q5ZPR3 534 aa9.66□□□□□ -0.86
CLK3-222ENST00000568232 PGBD2Q6P3X8 592 aa9.66□□□□□ -0.86
CLK3-222ENST00000568232 RANBP3LQ86VV4 465 aaPredicted RBP9.66□□□□□ -0.86
CLK3-222ENST00000568232 ALDH16A1Q8IZ83 802 aa9.66□□□□□ -0.86
CLK3-222ENST00000568232 ZNF781Q8N8C0 355 aa9.66□□□□□ -0.86
CLK3-222ENST00000568232 EPS8L3Q8TE67 593 aaKnown RBP9.66□□□□□ -0.86
CLK3-222ENST00000568232 MAGEB18Q96M61 343 aa9.66□□□□□ -0.86
CLK3-222ENST00000568232 SEPHS2Q99611 448 aa9.66□□□□□ -0.86
CLK3-222ENST00000568232 TXLNGYQ9BZA5 131 aa9.66□□□□□ -0.86
CLK3-222ENST00000568232 MMADHCQ9H3L0 296 aaPredicted RBP9.66□□□□□ -0.86
CLK3-222ENST00000568232 SMURF1Q9HCE7 757 aa9.66□□□□□ -0.86
CLK3-222ENST00000568232 NANSQ9NR45 359 aa9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms