RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 UBA52P62987 128 aaKnown RBP11.88□□□□□ -0.51
CLN3-210ENST00000563874 IGLV3-21P80748 117 aaPredicted RBP11.88□□□□□ -0.51
CLN3-210ENST00000563874 INSM1Q01101 510 aaPredicted RBP11.88□□□□□ -0.51
CLN3-210ENST00000563874 PMPCAQ10713 525 aa11.88□□□□□ -0.51
CLN3-210ENST00000563874 SLC18B1Q6NT16 456 aa11.88□□□□□ -0.51
CLN3-210ENST00000563874 TMEM92Q6UXU6 159 aa11.88□□□□□ -0.51
CLN3-210ENST00000563874 OR5M8Q8NGP6 311 aa11.88□□□□□ -0.51
CLN3-210ENST00000563874 OR13C8Q8NGS7 320 aa11.88□□□□□ -0.51
CLN3-210ENST00000563874 PPP1R1CQ8WVI7 109 aa11.88□□□□□ -0.51
CLN3-210ENST00000563874 ZNF416Q9BWM5 594 aa11.88□□□□□ -0.51
CLN3-210ENST00000563874 ALX4Q9H161 411 aaPredicted RBP11.88□□□□□ -0.51
CLN3-210ENST00000563874 GMEB2Q9UKD1 530 aa11.88□□□□□ -0.51
CLN3-210ENST00000563874 EMC9Q9Y3B6 208 aa11.88□□□□□ -0.51
CLN3-210ENST00000563874 OR5K4A6NMS3 321 aa11.87□□□□□ -0.51
CLN3-210ENST00000563874 EIF2B1Q14232 305 aaKnown RBP11.87□□□□□ -0.51
CLN3-210ENST00000563874 C21orf62-AS1Q17RA5 79 aa11.87□□□□□ -0.51
CLN3-210ENST00000563874 OR52W1Q6IF63 320 aa11.87□□□□□ -0.51
CLN3-210ENST00000563874 GVQW1Q8N7I0 195 aa11.87□□□□□ -0.51
CLN3-210ENST00000563874 RNF128Q8TEB7 428 aa11.87□□□□□ -0.51
CLN3-210ENST00000563874 CASTOR1Q8WTX7 329 aa11.87□□□□□ -0.51
CLN3-210ENST00000563874 ASB12Q8WXK4 309 aa11.87□□□□□ -0.51
CLN3-210ENST00000563874 WNT2BQ93097 391 aa11.87□□□□□ -0.51
CLN3-210ENST00000563874 FAM46BQ96A09 425 aa11.87□□□□□ -0.51
CLN3-210ENST00000563874 ABHD6Q9BV23 337 aa11.87□□□□□ -0.51
CLN3-210ENST00000563874 BARX1Q9HBU1 254 aaPredicted RBP11.87□□□□□ -0.51
CLN3-210ENST00000563874 COMMD9Q9P000 198 aa11.87□□□□□ -0.51
CLN3-210ENST00000563874 LRP12Q9Y561 859 aa11.87□□□□□ -0.51
CLN3-210ENST00000563874 KIF26BQ2KJY2 2108 aa11.87□□□□□ -0.51
CLN3-210ENST00000563874 RP1P56715 2156 aa11.87□□□□□ -0.51
CLN3-210ENST00000563874 A0A1W2PPC1 479 aa11.87□□□□□ -0.51
CLN3-210ENST00000563874 CCDC85CA6NKD9 419 aa11.87□□□□□ -0.51
CLN3-210ENST00000563874 CD2P06729 351 aa11.87□□□□□ -0.51
CLN3-210ENST00000563874 ZNF735P0CB33 412 aa11.87□□□□□ -0.51
CLN3-210ENST00000563874 CTSEP14091 401 aa11.87□□□□□ -0.51
CLN3-210ENST00000563874 AVPR2P30518 371 aa11.87□□□□□ -0.51
CLN3-210ENST00000563874 DLSTP36957 453 aa11.87□□□□□ -0.51
CLN3-210ENST00000563874 SKP1P63208 163 aa11.87□□□□□ -0.51
CLN3-210ENST00000563874 ZNF169Q14929 603 aaPredicted RBP11.87□□□□□ -0.51
CLN3-210ENST00000563874 CDNFQ49AH0 187 aa11.87□□□□□ -0.51
CLN3-210ENST00000563874 UNQ6126/PRO20091Q6UXV3 157 aa11.87□□□□□ -0.51
CLN3-210ENST00000563874 OR2W3Q7Z3T1 314 aa11.87□□□□□ -0.51
CLN3-210ENST00000563874 TMEM229BQ8NBD8 167 aa11.87□□□□□ -0.51
CLN3-210ENST00000563874 ZBTB8AQ96BR9 441 aa11.87□□□□□ -0.51
CLN3-210ENST00000563874 NPAS1Q99742 590 aa11.87□□□□□ -0.51
CLN3-210ENST00000563874 SLC25A21Q9BQT8 299 aaPredicted RBP11.87□□□□□ -0.51
CLN3-210ENST00000563874 PRMT8Q9NR22 394 aaPredicted RBP11.87□□□□□ -0.51
CLN3-210ENST00000563874 PRODH2Q9UF12 536 aa11.87□□□□□ -0.51
CLN3-210ENST00000563874 GPN3Q9UHW5 284 aaPredicted RBP11.87□□□□□ -0.51
CLN3-210ENST00000563874 VSIG4Q9Y279 399 aa11.87□□□□□ -0.51
CLN3-210ENST00000563874 SLCO1B1Q9Y6L6 691 aa11.87□□□□□ -0.51
CLN3-210ENST00000563874 LOC101059948A0A1B0GTJ6 334 aa11.86□□□□□ -0.51
CLN3-210ENST00000563874 PRSS37A4D1T9 235 aa11.86□□□□□ -0.51
CLN3-210ENST00000563874 DCNP07585 359 aaKnown RBP11.86□□□□□ -0.51
CLN3-210ENST00000563874 AGTR1P30556 359 aa11.86□□□□□ -0.51
CLN3-210ENST00000563874 CXADRP78310 365 aa11.86□□□□□ -0.51
CLN3-210ENST00000563874 C11orf87Q6NUJ2 197 aa11.86□□□□□ -0.51
CLN3-210ENST00000563874 OR13C3Q8NGS6 347 aa11.86□□□□□ -0.51
CLN3-210ENST00000563874 PTPMT1Q8WUK0 201 aaPredicted RBP11.86□□□□□ -0.51
CLN3-210ENST00000563874 TSLPQ969D9 159 aa11.86□□□□□ -0.51
CLN3-210ENST00000563874 OR11A1Q9GZK7 315 aa11.86□□□□□ -0.51
CLN3-210ENST00000563874 PCDHB16Q9NRJ7 776 aa11.86□□□□□ -0.51
CLN3-210ENST00000563874 TNFSF18Q9UNG2 199 aa11.86□□□□□ -0.51
CLN3-210ENST00000563874 TMED7Q9Y3B3 224 aa11.86□□□□□ -0.51
CLN3-210ENST00000563874 PCNX3Q9H6A9 2034 aa11.86□□□□□ -0.51
CLN3-210ENST00000563874 A0A0D9SG52 128 aa11.86□□□□□ -0.51
CLN3-210ENST00000563874 KIR2DS5A0A0G2JLQ3 304 aa11.86□□□□□ -0.51
CLN3-210ENST00000563874 A0A0G2JNG1 304 aa11.86□□□□□ -0.51
CLN3-210ENST00000563874 FAM221BA6H8Z2 402 aa11.86□□□□□ -0.51
CLN3-210ENST00000563874 RNF222A6NCQ9 220 aa11.86□□□□□ -0.51
CLN3-210ENST00000563874 KIR2DS3K7RE56 304 aa11.86□□□□□ -0.51
CLN3-210ENST00000563874 PHYHO14832 338 aa11.86□□□□□ -0.51
CLN3-210ENST00000563874 IL33O95760 270 aa11.86□□□□□ -0.51
CLN3-210ENST00000563874 BGLAPP02818 100 aa11.86□□□□□ -0.51
CLN3-210ENST00000563874 CNR1P21554 472 aa11.86□□□□□ -0.51
CLN3-210ENST00000563874 DNASE1L1P49184 302 aa11.86□□□□□ -0.51
CLN3-210ENST00000563874 RIDAP52758 137 aaKnown RBP11.86□□□□□ -0.51
CLN3-210ENST00000563874 SLC37A1P57057 533 aa11.86□□□□□ -0.51
CLN3-210ENST00000563874 KIR2DS5Q14953 304 aa11.86□□□□□ -0.51
CLN3-210ENST00000563874 PRAMEF17Q5VTA0 474 aa11.86□□□□□ -0.51
CLN3-210ENST00000563874 TMEM88Q6PEY1 159 aa11.86□□□□□ -0.51
CLN3-210ENST00000563874 KCTD9Q7L273 389 aa11.86□□□□□ -0.51
CLN3-210ENST00000563874 LINC00346Q8IVM7 164 aa11.86□□□□□ -0.51
CLN3-210ENST00000563874 KCNRGQ8N5I3 272 aa11.86□□□□□ -0.51
CLN3-210ENST00000563874 CST11Q9H112 138 aa11.86□□□□□ -0.51
CLN3-210ENST00000563874 SLC25A12O75746 678 aa11.85□□□□□ -0.51
CLN3-210ENST00000563874 VAMP1P23763 118 aa11.85□□□□□ -0.51
CLN3-210ENST00000563874 PPP1R1AQ13522 171 aa11.85□□□□□ -0.51
CLN3-210ENST00000563874 TEX30Q5JUR7 227 aa11.85□□□□□ -0.51
CLN3-210ENST00000563874 PAPD4Q6PIY7 484 aaKnown RBP11.85□□□□□ -0.51
CLN3-210ENST00000563874 MOB3CQ70IA8 216 aa11.85□□□□□ -0.51
CLN3-210ENST00000563874 RTN4RL2Q86UN3 420 aa11.85□□□□□ -0.51
CLN3-210ENST00000563874 ZNF584Q8IVC4 421 aa11.85□□□□□ -0.51
CLN3-210ENST00000563874 PRSS58Q8IYP2 241 aa11.85□□□□□ -0.51
CLN3-210ENST00000563874 CHST4Q8NCG5 386 aa11.85□□□□□ -0.51
CLN3-210ENST00000563874 OR4D6Q8NGJ1 314 aa11.85□□□□□ -0.51
CLN3-210ENST00000563874 PHOSPHO2Q8TCD6 241 aa11.85□□□□□ -0.51
CLN3-210ENST00000563874 C8orf44Q96CB5 159 aa11.85□□□□□ -0.51
CLN3-210ENST00000563874 PELOQ9BRX2 385 aaKnown RBP11.85□□□□□ -0.51
CLN3-210ENST00000563874 ADAT1Q9BUB4 502 aaKnown RBP11.85□□□□□ -0.51
CLN3-210ENST00000563874 SAV1Q9H4B6 383 aaPredicted RBP11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms