RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 HTRA1Q92743 480 aa9.9□□□□□ -0.83
USP3-218ENST00000560202 AMELYQ99218 206 aa9.9□□□□□ -0.83
USP3-218ENST00000560202 TTYH2Q9BSA4 534 aa9.9□□□□□ -0.83
USP3-218ENST00000560202 GPR35Q9HC97 309 aa9.9□□□□□ -0.83
USP3-218ENST00000560202 EMC7Q9NPA0 242 aa9.9□□□□□ -0.83
USP3-218ENST00000560202 DIABLOQ9NR28 239 aa9.9□□□□□ -0.83
USP3-218ENST00000560202 SLC7A10Q9NS82 523 aa9.9□□□□□ -0.83
USP3-218ENST00000560202 DSPP15924 2871 aaKnown RBP9.89□□□□□ -0.83
USP3-218ENST00000560202 PRRC2CQ9Y520 2896 aaKnown RBP9.89□□□□□ -0.83
USP3-218ENST00000560202 PIEZO2Q9H5I5 2752 aa9.89□□□□□ -0.83
USP3-218ENST00000560202 FIGNL2A6NMB9 653 aa9.89□□□□□ -0.83
USP3-218ENST00000560202 PSMD9O00233 223 aa9.89□□□□□ -0.83
USP3-218ENST00000560202 CCRL2O00421 344 aa9.89□□□□□ -0.83
USP3-218ENST00000560202 UPK1BO75841 260 aa9.89□□□□□ -0.83
USP3-218ENST00000560202 KRT8P05787 483 aa9.89□□□□□ -0.83
USP3-218ENST00000560202 ABOP16442 354 aa9.89□□□□□ -0.83
USP3-218ENST00000560202 CPEP16870 476 aa9.89□□□□□ -0.83
USP3-218ENST00000560202 MSR1P21757 451 aa9.89□□□□□ -0.83
USP3-218ENST00000560202 MRPS34P82930 218 aaKnown RBP9.89□□□□□ -0.83
USP3-218ENST00000560202 BDH1Q02338 343 aa9.89□□□□□ -0.83
USP3-218ENST00000560202 EGR3Q06889 387 aa9.89□□□□□ -0.83
USP3-218ENST00000560202 TPBGQ13641 420 aa9.89□□□□□ -0.83
USP3-218ENST00000560202 SSX1Q16384 188 aa9.89□□□□□ -0.83
USP3-218ENST00000560202 CEACAM16Q2WEN9 425 aa9.89□□□□□ -0.83
USP3-218ENST00000560202 C6orf183Q5T699 404 aa9.89□□□□□ -0.83
USP3-218ENST00000560202 LIPKQ5VXJ0 399 aa9.89□□□□□ -0.83
USP3-218ENST00000560202 OR2A2Q6IF42 318 aa9.89□□□□□ -0.83
USP3-218ENST00000560202 FAM214BQ7L5A3 538 aa9.89□□□□□ -0.83
USP3-218ENST00000560202 DCXRQ7Z4W1 244 aa9.89□□□□□ -0.83
USP3-218ENST00000560202 KCTD20Q7Z5Y7 419 aa9.89□□□□□ -0.83
USP3-218ENST00000560202 CD163Q86VB7 1156 aa9.89□□□□□ -0.83
USP3-218ENST00000560202 LINC00346Q8IVM7 164 aa9.89□□□□□ -0.83
USP3-218ENST00000560202 GRPEL2Q8TAA5 225 aa9.89□□□□□ -0.83
USP3-218ENST00000560202 UFD1Q92890 307 aa9.89□□□□□ -0.83
USP3-218ENST00000560202 NABP1Q96AH0 204 aa9.89□□□□□ -0.83
USP3-218ENST00000560202 DACH2Q96NX9 599 aa9.89□□□□□ -0.83
USP3-218ENST00000560202 TM9SF2Q99805 663 aa9.89□□□□□ -0.83
USP3-218ENST00000560202 ABHD6Q9BV23 337 aa9.89□□□□□ -0.83
USP3-218ENST00000560202 MMP27Q9H306 513 aa9.89□□□□□ -0.83
USP3-218ENST00000560202 NELFAQ9H3P2 528 aa9.89□□□□□ -0.83
USP3-218ENST00000560202 C12orf49Q9H741 205 aa9.89□□□□□ -0.83
USP3-218ENST00000560202 TRIM36Q9NQ86 728 aa9.89□□□□□ -0.83
USP3-218ENST00000560202 ACOXLQ9NUZ1 547 aa9.89□□□□□ -0.83
USP3-218ENST00000560202 CYB5R1Q9UHQ9 305 aa9.89□□□□□ -0.83
USP3-218ENST00000560202 MRM2Q9UI43 246 aaKnown RBP9.89□□□□□ -0.83
USP3-218ENST00000560202 GNG8Q9UK08 70 aa9.89□□□□□ -0.83
USP3-218ENST00000560202 MBD3L4A6NDZ8 208 aaPredicted RBP9.88□□□□□ -0.83
USP3-218ENST00000560202 MBD3L3A6NE82 208 aaPredicted RBP9.88□□□□□ -0.83
USP3-218ENST00000560202 MBD3L5A6NJ08 208 aaPredicted RBP9.88□□□□□ -0.83
USP3-218ENST00000560202 METTL15A6NJ78 407 aa9.88□□□□□ -0.83
USP3-218ENST00000560202 E9PI62 339 aa9.88□□□□□ -0.83
USP3-218ENST00000560202 RPL36A-HNRNPH2H7BZ11 118 aa9.88□□□□□ -0.83
USP3-218ENST00000560202 TACSTD2P09758 323 aa9.88□□□□□ -0.83
USP3-218ENST00000560202 OR8G3PP0DMU2 310 aa9.88□□□□□ -0.83
USP3-218ENST00000560202 NPR2P20594 1047 aa9.88□□□□□ -0.83
USP3-218ENST00000560202 GBX2P52951 348 aaPredicted RBP9.88□□□□□ -0.83
USP3-218ENST00000560202 DEFA1P59665 94 aa9.88□□□□□ -0.83
USP3-218ENST00000560202 DEFA3P59666 94 aa9.88□□□□□ -0.83
USP3-218ENST00000560202 LSM6P62312 80 aaKnown RBP9.88□□□□□ -0.83
USP3-218ENST00000560202 ZNF45Q02386 682 aa9.88□□□□□ -0.83
USP3-218ENST00000560202 ROM1Q03395 351 aa9.88□□□□□ -0.83
USP3-218ENST00000560202 AQP6Q13520 282 aa9.88□□□□□ -0.83
USP3-218ENST00000560202 GUSBP1Q15486 140 aa9.88□□□□□ -0.83
USP3-218ENST00000560202 C1orf185Q5T7R7 199 aa9.88□□□□□ -0.83
USP3-218ENST00000560202 RTL6Q6ICC9 239 aa9.88□□□□□ -0.83
USP3-218ENST00000560202 KCTD18Q6PI47 426 aaPredicted RBP9.88□□□□□ -0.83
USP3-218ENST00000560202 CORO6Q6QEF8 472 aa9.88□□□□□ -0.83
USP3-218ENST00000560202 GFRALQ6UXV0 394 aa9.88□□□□□ -0.83
USP3-218ENST00000560202 FAM220AQ7Z4H9 259 aa9.88□□□□□ -0.83
USP3-218ENST00000560202 P2RY8Q86VZ1 359 aa9.88□□□□□ -0.83
USP3-218ENST00000560202 ATCAYQ86WG3 371 aa9.88□□□□□ -0.83
USP3-218ENST00000560202 PHC2Q8IXK0 858 aa9.88□□□□□ -0.83
USP3-218ENST00000560202 GCNT2Q8N0V5 402 aa9.88□□□□□ -0.83
USP3-218ENST00000560202 ZFP41Q8N8Y5 198 aa9.88□□□□□ -0.83
USP3-218ENST00000560202 OR2AJ1Q8NGZ0 328 aa9.88□□□□□ -0.83
USP3-218ENST00000560202 OR52N5Q8NH56 324 aa9.88□□□□□ -0.83
USP3-218ENST00000560202 MBD3L2Q8NHZ7 208 aaPredicted RBP9.88□□□□□ -0.83
USP3-218ENST00000560202 ST7LQ8TDW4 575 aa9.88□□□□□ -0.83
USP3-218ENST00000560202 PELI1Q96FA3 418 aa9.88□□□□□ -0.83
USP3-218ENST00000560202 OR8B4Q96RC9 309 aa9.88□□□□□ -0.83
USP3-218ENST00000560202 FOXB1Q99853 325 aa9.88□□□□□ -0.83
USP3-218ENST00000560202 TMEM38BQ9NVV0 291 aa9.88□□□□□ -0.83
USP3-218ENST00000560202 SLCO1C1Q9NYB5 712 aa9.88□□□□□ -0.83
USP3-218ENST00000560202 UPB1Q9UBR1 384 aa9.88□□□□□ -0.83
USP3-218ENST00000560202 IKZF2Q9UKS7 526 aa9.88□□□□□ -0.83
USP3-218ENST00000560202 POLR1DQ9Y2S0 133 aa9.88□□□□□ -0.83
USP3-218ENST00000560202 EMC9Q9Y3B6 208 aa9.88□□□□□ -0.83
USP3-218ENST00000560202 LHFPL6Q9Y693 200 aa9.88□□□□□ -0.83
USP3-218ENST00000560202 PNMA8CA0A1B0GUJ8 204 aa9.87□□□□□ -0.83
USP3-218ENST00000560202 TTLL8A6PVC2 850 aa9.87□□□□□ -0.83
USP3-218ENST00000560202 NOTOA8MTQ0 251 aa9.87□□□□□ -0.83
USP3-218ENST00000560202 ZNF587BE7ETH6 402 aa9.87□□□□□ -0.83
USP3-218ENST00000560202 ERVH48-1M5A8F1 160 aa9.87□□□□□ -0.83
USP3-218ENST00000560202 PRRG2O14669 202 aa9.87□□□□□ -0.83
USP3-218ENST00000560202 ALX3O95076 343 aa9.87□□□□□ -0.83
USP3-218ENST00000560202 HOXD4P09016 255 aaPredicted RBP9.87□□□□□ -0.83
USP3-218ENST00000560202 TRAPPC2P0DI81 140 aa9.87□□□□□ -0.83
USP3-218ENST00000560202 TRAPPC2BP0DI82 140 aa9.87□□□□□ -0.83
USP3-218ENST00000560202 BMP4P12644 408 aa9.87□□□□□ -0.83
USP3-218ENST00000560202 CELP19835 753 aa9.87□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms