RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 KCTD4Q8WVF5 259 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 SHC3Q92529 594 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 SLC7A6Q92536 515 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 POP5Q969H6 163 aaKnown RBP2.27□□□□□ -2.05
VPS13C-208ENST00000559119 ROPN1LQ96C74 230 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 DCPSQ96C86 337 aaKnown RBP2.27□□□□□ -2.05
VPS13C-208ENST00000559119 SGTBQ96EQ0 304 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 ARL5BQ96KC2 179 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 HYLS1Q96M11 299 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 NSMCE2Q96MF7 247 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 GPR137Q96N19 417 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 MBOAT7Q96N66 472 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 ACCSQ96QU6 501 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 CYP2S1Q96SQ9 504 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 PLIN2Q99541 437 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 HOPXQ9BPY8 73 aaPredicted RBP2.27□□□□□ -2.05
VPS13C-208ENST00000559119 KCTD14Q9BQ13 255 aaPredicted RBP2.27□□□□□ -2.05
VPS13C-208ENST00000559119 FEM1AQ9BSK4 669 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 TEKT3Q9BXF9 490 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 SLC19A3Q9BZV2 496 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 ROGDIQ9GZN7 287 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 ABCG4Q9H172 646 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 SPNS1Q9H2V7 528 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 TMEM245Q9H330 911 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 COG4Q9H9E3 785 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 ACP6Q9NPH0 428 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 RGS18Q9NS28 235 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 COA4Q9NYJ1 87 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 EHFQ9NZC4 300 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 OPTCQ9UBM4 332 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 NARFQ9UHQ1 456 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 NDUFAF1Q9Y375 327 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 STRAPQ9Y3F4 350 aaKnown RBP2.27□□□□□ -2.05
VPS13C-208ENST00000559119 GMPPBQ9Y5P6 360 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 TEX264Q9Y6I9 313 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 LAMB1P07942 1786 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 ANKRD36CQ5JPF3 1778 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 BCORQ6W2J9 1755 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 TJP1Q07157 1748 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 SIGLEC1Q9BZZ2 1709 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 TRPM3Q9HCF6 1732 aaPredicted RBP2.27□□□□□ -2.05
VPS13C-208ENST00000559119 PLCH1Q4KWH8 1693 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 RICTORQ6R327 1708 aa2.26□□□□□ -2.05
VPS13C-208ENST00000559119 UBR1Q8IWV7 1749 aa2.26□□□□□ -2.05
VPS13C-208ENST00000559119 hCG_1818297A0A087WSY0 165 aa2.26□□□□□ -2.05
VPS13C-208ENST00000559119 IGHV7-81A0A0B4J1V7 117 aa2.26□□□□□ -2.05
VPS13C-208ENST00000559119 A0A1B0GWJ7 208 aa2.26□□□□□ -2.05
VPS13C-208ENST00000559119 LRIT2A6NDA9 550 aa2.26□□□□□ -2.05
VPS13C-208ENST00000559119 BBIP1A8MTZ0 92 aa2.26□□□□□ -2.05
VPS13C-208ENST00000559119 C19orf81C9J6K1 198 aa2.26□□□□□ -2.05
VPS13C-208ENST00000559119 KRBOX1C9JBD0 128 aa2.26□□□□□ -2.05
VPS13C-208ENST00000559119 AIM2O14862 343 aa2.26□□□□□ -2.05
VPS13C-208ENST00000559119 PRKAB2O43741 272 aa2.26□□□□□ -2.05
VPS13C-208ENST00000559119 SDC3O75056 442 aa2.26□□□□□ -2.05
VPS13C-208ENST00000559119 OR2B3O76000 313 aa2.26□□□□□ -2.05
VPS13C-208ENST00000559119 IFNA4P05014 189 aa2.26□□□□□ -2.05
VPS13C-208ENST00000559119 SFTPBP07988 381 aa2.26□□□□□ -2.05
VPS13C-208ENST00000559119 SERPINF2P08697 491 aa2.26□□□□□ -2.05
VPS13C-208ENST00000559119 GNAO1P09471 354 aa2.26□□□□□ -2.05
VPS13C-208ENST00000559119 RRASP10301 218 aa2.26□□□□□ -2.05
VPS13C-208ENST00000559119 ALPPL2P10696 532 aa2.26□□□□□ -2.05
VPS13C-208ENST00000559119 AREGP15514 252 aa2.26□□□□□ -2.05
VPS13C-208ENST00000559119 NELFEP18615 380 aaKnown RBP2.26□□□□□ -2.05
VPS13C-208ENST00000559119 TNNI3P19429 210 aa2.26□□□□□ -2.05
VPS13C-208ENST00000559119 VDAC1P21796 283 aa2.26□□□□□ -2.05
VPS13C-208ENST00000559119 CPN2P22792 545 aa2.26□□□□□ -2.05
VPS13C-208ENST00000559119 AHCYP23526 432 aa2.26□□□□□ -2.05
VPS13C-208ENST00000559119 EPHX2P34913 555 aa2.26□□□□□ -2.05
VPS13C-208ENST00000559119 RFC2P35250 354 aa2.26□□□□□ -2.05
VPS13C-208ENST00000559119 GRIA1P42261 906 aa2.26□□□□□ -2.05
VPS13C-208ENST00000559119 MAGEA12P43365 314 aa2.26□□□□□ -2.05
VPS13C-208ENST00000559119 CSNK1DP48730 415 aa2.26□□□□□ -2.05
VPS13C-208ENST00000559119 STARP49675 285 aa2.26□□□□□ -2.05
VPS13C-208ENST00000559119 STK19P49842 368 aaPredicted RBP2.26□□□□□ -2.05
VPS13C-208ENST00000559119 GDI2P50395 445 aaKnown RBP2.26□□□□□ -2.05
VPS13C-208ENST00000559119 PSMD4P55036 377 aaKnown RBP2.26□□□□□ -2.05
VPS13C-208ENST00000559119 STARD6P59095 220 aa2.26□□□□□ -2.05
VPS13C-208ENST00000559119 RAB14P61106 215 aa2.26□□□□□ -2.05
VPS13C-208ENST00000559119 IL1RL1Q01638 556 aa2.26□□□□□ -2.05
VPS13C-208ENST00000559119 C17orf67Q0P5P2 114 aa2.26□□□□□ -2.05
VPS13C-208ENST00000559119 MOBPQ13875 183 aa2.26□□□□□ -2.05
VPS13C-208ENST00000559119 GAMTQ14353 236 aa2.26□□□□□ -2.05
VPS13C-208ENST00000559119 RAB35Q15286 201 aa2.26□□□□□ -2.05
VPS13C-208ENST00000559119 SYPL1Q16563 259 aa2.26□□□□□ -2.05
VPS13C-208ENST00000559119 AANATQ16613 207 aa2.26□□□□□ -2.05
VPS13C-208ENST00000559119 ADPRMQ3LIE5 342 aa2.26□□□□□ -2.05
VPS13C-208ENST00000559119 EPC2Q52LR7 807 aa2.26□□□□□ -2.05
VPS13C-208ENST00000559119 COQ5Q5HYK3 327 aa2.26□□□□□ -2.05
VPS13C-208ENST00000559119 LDLRAP1Q5SW96 308 aa2.26□□□□□ -2.05
VPS13C-208ENST00000559119 LIN9Q5TKA1 542 aa2.26□□□□□ -2.05
VPS13C-208ENST00000559119 ATF7IP2Q5U623 682 aa2.26□□□□□ -2.05
VPS13C-208ENST00000559119 STEAP4Q687X5 459 aa2.26□□□□□ -2.05
VPS13C-208ENST00000559119 ELP2Q6IA86 826 aa2.26□□□□□ -2.05
VPS13C-208ENST00000559119 ISLR2Q6UXK2 745 aa2.26□□□□□ -2.05
VPS13C-208ENST00000559119 GALNT10Q86SR1 603 aa2.26□□□□□ -2.05
VPS13C-208ENST00000559119 STX12Q86Y82 276 aa2.26□□□□□ -2.05
VPS13C-208ENST00000559119 CNTN4Q8IWV2 1026 aa2.26□□□□□ -2.05
VPS13C-208ENST00000559119 BBS7Q8IWZ6 715 aa2.26□□□□□ -2.05
VPS13C-208ENST00000559119 C8orf59Q8N0T1 100 aaPredicted RBP2.26□□□□□ -2.05
VPS13C-208ENST00000559119 STX19Q8N4C7 294 aa2.26□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms