RNA–Protein interactions for RNA: ENST00000553324.5

SHMT2-204, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-204ENST00000553324 CLEC12AQ5QGZ9 265 aa13.17□□□□□ -0.3
SHMT2-204ENST00000553324 ZNF774Q6NX45 483 aa13.17□□□□□ -0.3
SHMT2-204ENST00000553324 CD300LDQ6UXZ3 194 aa13.17□□□□□ -0.3
SHMT2-204ENST00000553324 ZBTB46Q86UZ6 589 aa13.17□□□□□ -0.3
SHMT2-204ENST00000553324 LRP11Q86VZ4 500 aa13.17□□□□□ -0.3
SHMT2-204ENST00000553324 OR6V1Q8N148 313 aa13.17□□□□□ -0.3
SHMT2-204ENST00000553324 GJC3Q8NFK1 279 aa13.17□□□□□ -0.3
SHMT2-204ENST00000553324 OR52E2Q8NGJ4 325 aa13.17□□□□□ -0.3
SHMT2-204ENST00000553324 UBASH3BQ8TF42 649 aa13.17□□□□□ -0.3
SHMT2-204ENST00000553324 GIPC3Q8TF64 312 aa13.17□□□□□ -0.3
SHMT2-204ENST00000553324 SNX33Q8WV41 574 aa13.17□□□□□ -0.3
SHMT2-204ENST00000553324 IPCEF1Q8WWN9 437 aaPredicted RBP13.17□□□□□ -0.3
SHMT2-204ENST00000553324 COG8Q96MW5 612 aa13.17□□□□□ -0.3
SHMT2-204ENST00000553324 CDADC1Q9BWV3 514 aa13.17□□□□□ -0.3
SHMT2-204ENST00000553324 EGLN3Q9H6Z9 239 aa13.17□□□□□ -0.3
SHMT2-204ENST00000553324 TBCCD1Q9NVR7 557 aa13.17□□□□□ -0.3
SHMT2-204ENST00000553324 PLEK2Q9NYT0 353 aa13.17□□□□□ -0.3
SHMT2-204ENST00000553324 TAAR3PQ9P1P4 343 aa13.17□□□□□ -0.3
SHMT2-204ENST00000553324 FZR1Q9UM11 496 aa13.17□□□□□ -0.3
SHMT2-204ENST00000553324 BHLHE40O14503 412 aa13.16□□□□□ -0.3
SHMT2-204ENST00000553324 LY6HO94772 140 aa13.16□□□□□ -0.3
SHMT2-204ENST00000553324 USF1P22415 310 aaPredicted RBP13.16□□□□□ -0.3
SHMT2-204ENST00000553324 LIPAP38571 399 aa13.16□□□□□ -0.3
SHMT2-204ENST00000553324 KHDRBS1Q07666 443 aaKnown RBP eCLIP13.16□□□□□ -0.3
SHMT2-204ENST00000553324 PPP1R8Q12972 351 aaKnown RBP13.16□□□□□ -0.3
SHMT2-204ENST00000553324 MSMPQ1L6U9 139 aa13.16□□□□□ -0.3
SHMT2-204ENST00000553324 SLC35F1Q5T1Q4 408 aa13.16□□□□□ -0.3
SHMT2-204ENST00000553324 ZCCHC24Q8N2G6 241 aaKnown RBP13.16□□□□□ -0.3
SHMT2-204ENST00000553324 ZNF786Q8N393 782 aa13.16□□□□□ -0.3
SHMT2-204ENST00000553324 LNX2Q8N448 690 aa13.16□□□□□ -0.3
SHMT2-204ENST00000553324 NPEPL1Q8NDH3 523 aa13.16□□□□□ -0.3
SHMT2-204ENST00000553324 ICA1LQ8NDH6 482 aa13.16□□□□□ -0.3
SHMT2-204ENST00000553324 OR2T33Q8NG76 320 aa13.16□□□□□ -0.3
SHMT2-204ENST00000553324 OR10G2Q8NGC3 310 aa13.16□□□□□ -0.3
SHMT2-204ENST00000553324 TSSK2Q96PF2 358 aa13.16□□□□□ -0.3
SHMT2-204ENST00000553324 OR51B6Q9H340 312 aa13.16□□□□□ -0.3
SHMT2-204ENST00000553324 RPRD1BQ9NQG5 326 aaKnown RBP13.16□□□□□ -0.3
SHMT2-204ENST00000553324 ASH2LQ9UBL3 628 aa13.16□□□□□ -0.3
SHMT2-204ENST00000553324 ATPIF1Q9UII2 106 aa13.16□□□□□ -0.3
SHMT2-204ENST00000553324 POLR1DQ9Y2S0 133 aa13.16□□□□□ -0.3
SHMT2-204ENST00000553324 IGLV1-36A0A0B4J1U3 117 aa13.15□□□□□ -0.3
SHMT2-204ENST00000553324 TCRBV3S1A0A5B6 114 aa13.15□□□□□ -0.3
SHMT2-204ENST00000553324 OR6C68A6NDL8 312 aa13.15□□□□□ -0.3
SHMT2-204ENST00000553324 DOK2O60496 412 aa13.15□□□□□ -0.3
SHMT2-204ENST00000553324 MPZL1O95297 269 aa13.15□□□□□ -0.3
SHMT2-204ENST00000553324 ABHD16AO95870 558 aa13.15□□□□□ -0.3
SHMT2-204ENST00000553324 IGHV3-13P01766 116 aa13.15□□□□□ -0.3
SHMT2-204ENST00000553324 WNT5AP41221 380 aa13.15□□□□□ -0.3
SHMT2-204ENST00000553324 ALDH3B1P43353 468 aa13.15□□□□□ -0.3
SHMT2-204ENST00000553324 NR4A2P43354 598 aa13.15□□□□□ -0.3
SHMT2-204ENST00000553324 HTR5AP47898 357 aa13.15□□□□□ -0.3
SHMT2-204ENST00000553324 MRPS11P82912 194 aaKnown RBP13.15□□□□□ -0.3
SHMT2-204ENST00000553324 PPP2R2BQ00005 443 aa13.15□□□□□ -0.3
SHMT2-204ENST00000553324 CARTPTQ16568 116 aa13.15□□□□□ -0.3
SHMT2-204ENST00000553324 PCGF3Q3KNV8 242 aa13.15□□□□□ -0.3
SHMT2-204ENST00000553324 MBNL2Q5VZF2 373 aaKnown RBP13.15□□□□□ -0.3
SHMT2-204ENST00000553324 TMEM154Q6P9G4 183 aa13.15□□□□□ -0.3
SHMT2-204ENST00000553324 Q71RC1 249 aaPredicted RBP13.15□□□□□ -0.3
SHMT2-204ENST00000553324 VASH1Q7L8A9 365 aaPredicted RBP13.15□□□□□ -0.3
SHMT2-204ENST00000553324 MAPK1IP1LQ8NDC0 245 aa13.15□□□□□ -0.3
SHMT2-204ENST00000553324 PAPD5Q8NDF8 572 aaKnown RBP13.15□□□□□ -0.3
SHMT2-204ENST00000553324 OR2T4Q8NH00 348 aa13.15□□□□□ -0.3
SHMT2-204ENST00000553324 MARS2Q96GW9 593 aaKnown RBP13.15□□□□□ -0.3
SHMT2-204ENST00000553324 FOXN4Q96NZ1 517 aa13.15□□□□□ -0.3
SHMT2-204ENST00000553324 DCLRE1CQ96SD1 692 aaKnown RBP13.15□□□□□ -0.3
SHMT2-204ENST00000553324 TSSK6Q9BXA6 273 aa13.15□□□□□ -0.3
SHMT2-204ENST00000553324 CADM1Q9BY67 442 aaKnown RBP13.15□□□□□ -0.3
SHMT2-204ENST00000553324 ZNF556Q9HAH1 456 aa13.15□□□□□ -0.3
SHMT2-204ENST00000553324 HINT3Q9NQE9 182 aaKnown RBP13.15□□□□□ -0.3
SHMT2-204ENST00000553324 CYSLTR2Q9NS75 346 aa13.15□□□□□ -0.3
SHMT2-204ENST00000553324 TBC1D23Q9NUY8 699 aa13.15□□□□□ -0.3
SHMT2-204ENST00000553324 CGGBP1Q9UFW8 167 aaPredicted RBP13.15□□□□□ -0.3
SHMT2-204ENST00000553324 KCNG2Q9UJ96 466 aa13.15□□□□□ -0.3
SHMT2-204ENST00000553324 KLHL21Q9UJP4 597 aa13.15□□□□□ -0.3
SHMT2-204ENST00000553324 ARFGEF3Q5TH69 2177 aa13.14□□□□□ -0.31
SHMT2-204ENST00000553324 OR6C6A6NF89 314 aa13.14□□□□□ -0.31
SHMT2-204ENST00000553324 C17orf100A8MU93 164 aa13.14□□□□□ -0.31
SHMT2-204ENST00000553324 VWC2LB2RUY7 222 aa13.14□□□□□ -0.31
SHMT2-204ENST00000553324 J3QW42 95 aa13.14□□□□□ -0.31
SHMT2-204ENST00000553324 DCTN6O00399 190 aa13.14□□□□□ -0.31
SHMT2-204ENST00000553324 TLX2O43763 284 aaPredicted RBP13.14□□□□□ -0.31
SHMT2-204ENST00000553324 E2F6O75461 281 aa13.14□□□□□ -0.31
SHMT2-204ENST00000553324 CLPTM1O96005 669 aa13.14□□□□□ -0.31
SHMT2-204ENST00000553324 IFNGP01579 166 aa13.14□□□□□ -0.31
SHMT2-204ENST00000553324 HLA-DQA2P01906 255 aa13.14□□□□□ -0.31
SHMT2-204ENST00000553324 IGFBP1P08833 259 aaPredicted RBP13.14□□□□□ -0.31
SHMT2-204ENST00000553324 GAAP10253 952 aa13.14□□□□□ -0.31
SHMT2-204ENST00000553324 GIFP27352 417 aa13.14□□□□□ -0.31
SHMT2-204ENST00000553324 RGS6P49758 472 aa13.14□□□□□ -0.31
SHMT2-204ENST00000553324 PPP1CBP62140 327 aa13.14□□□□□ -0.31
SHMT2-204ENST00000553324 TEKQ02763 1124 aa13.14□□□□□ -0.31
SHMT2-204ENST00000553324 FAM209AQ5JX71 171 aa13.14□□□□□ -0.31
SHMT2-204ENST00000553324 ZNF101Q8IZC7 436 aa13.14□□□□□ -0.31
SHMT2-204ENST00000553324 SDR9C7Q8NEX9 313 aa13.14□□□□□ -0.31
SHMT2-204ENST00000553324 SLC26A10Q8NG04 563 aa13.14□□□□□ -0.31
SHMT2-204ENST00000553324 OR2AJ1Q8NGZ0 328 aa13.14□□□□□ -0.31
SHMT2-204ENST00000553324 OR1F12Q8NHA8 337 aa13.14□□□□□ -0.31
SHMT2-204ENST00000553324 ABHD4Q8TB40 342 aa13.14□□□□□ -0.31
SHMT2-204ENST00000553324 KLF14Q8TD94 323 aaPredicted RBP13.14□□□□□ -0.31
SHMT2-204ENST00000553324 FEVQ99581 238 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms