RNA–Protein interactions for RNA: ENST00000536218.5

LIG1-203, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,179 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-203ENST00000536218 UBE2ZQ9H832 354 aaPredicted RBP12.64□□□□□ -0.39
LIG1-203ENST00000536218 SEC61A2Q9H9S3 476 aa12.64□□□□□ -0.39
LIG1-203ENST00000536218 OR2S2Q9NQN1 319 aa12.64□□□□□ -0.39
LIG1-203ENST00000536218 SLC7A7Q9UM01 511 aa12.64□□□□□ -0.39
LIG1-203ENST00000536218 CACNA1IQ9P0X4 2223 aa12.64□□□□□ -0.39
LIG1-203ENST00000536218 IFITM5A6NNB3 132 aa12.63□□□□□ -0.39
LIG1-203ENST00000536218 IFNA2P01563 188 aa12.63□□□□□ -0.39
LIG1-203ENST00000536218 PSMB10P40306 273 aa12.63□□□□□ -0.39
LIG1-203ENST00000536218 GAMTQ14353 236 aa12.63□□□□□ -0.39
LIG1-203ENST00000536218 RSU1Q15404 277 aa12.63□□□□□ -0.39
LIG1-203ENST00000536218 DCST2Q5T1A1 773 aa12.63□□□□□ -0.39
LIG1-203ENST00000536218 PRAMEF17Q5VTA0 474 aa12.63□□□□□ -0.39
LIG1-203ENST00000536218 ARL14Q8N4G2 192 aa12.63□□□□□ -0.39
LIG1-203ENST00000536218 SLC41A3Q96GZ6 507 aa12.63□□□□□ -0.39
LIG1-203ENST00000536218 ARHGDIGQ99819 225 aa12.63□□□□□ -0.39
LIG1-203ENST00000536218 OCSTAMPQ9BR26 566 aa12.63□□□□□ -0.39
LIG1-203ENST00000536218 NRIP3Q9NQ35 241 aa12.63□□□□□ -0.39
LIG1-203ENST00000536218 C19orf53Q9UNZ5 99 aaPredicted RBP12.63□□□□□ -0.39
LIG1-203ENST00000536218 TRBV2A0A0J9YWF9 115 aa12.63□□□□□ -0.39
LIG1-203ENST00000536218 J3QRE1 110 aa12.63□□□□□ -0.39
LIG1-203ENST00000536218 THY1P04216 161 aa12.63□□□□□ -0.39
LIG1-203ENST00000536218 OR4E1P0C645 316 aa12.63□□□□□ -0.39
LIG1-203ENST00000536218 GLP1RP43220 463 aa12.63□□□□□ -0.39
LIG1-203ENST00000536218 PRKXP51817 358 aa12.63□□□□□ -0.39
LIG1-203ENST00000536218 CXADRP78310 365 aa12.63□□□□□ -0.39
LIG1-203ENST00000536218 KIAA0141Q14154 515 aaPredicted RBP12.63□□□□□ -0.39
LIG1-203ENST00000536218 INPP5JQ15735 1006 aaPredicted RBP12.63□□□□□ -0.39
LIG1-203ENST00000536218 NKAIN2Q5VXU1 208 aa12.63□□□□□ -0.39
LIG1-203ENST00000536218 DMKNQ6E0U4 476 aaPredicted RBP12.63□□□□□ -0.39
LIG1-203ENST00000536218 RNF44Q7L0R7 432 aa12.63□□□□□ -0.39
LIG1-203ENST00000536218 GDF7Q7Z4P5 450 aa12.63□□□□□ -0.39
LIG1-203ENST00000536218 ZAR1Q86SH2 424 aa12.63□□□□□ -0.39
LIG1-203ENST00000536218 EID2Q8N6I1 236 aa12.63□□□□□ -0.39
LIG1-203ENST00000536218 UBAC2Q8NBM4 344 aa12.63□□□□□ -0.39
LIG1-203ENST00000536218 MICU1Q9BPX6 476 aa12.63□□□□□ -0.39
LIG1-203ENST00000536218 SULT4A1Q9BR01 284 aa12.63□□□□□ -0.39
LIG1-203ENST00000536218 EGLN1Q9GZT9 426 aa12.63□□□□□ -0.39
LIG1-203ENST00000536218 SEMA6CQ9H3T2 930 aa12.63□□□□□ -0.39
LIG1-203ENST00000536218 FN3KRPQ9HA64 309 aa12.63□□□□□ -0.39
LIG1-203ENST00000536218 LYRM4Q9HD34 91 aa12.63□□□□□ -0.39
LIG1-203ENST00000536218 SOHLH2Q9NX45 425 aa12.63□□□□□ -0.39
LIG1-203ENST00000536218 NPIPB9F8W1W9 429 aa12.63□□□□□ -0.39
LIG1-203ENST00000536218 HRKO00198 91 aa12.63□□□□□ -0.39
LIG1-203ENST00000536218 HEXBP07686 556 aa12.63□□□□□ -0.39
LIG1-203ENST00000536218 SRMP19623 302 aa12.63□□□□□ -0.39
LIG1-203ENST00000536218 OMPP47874 163 aa12.63□□□□□ -0.39
LIG1-203ENST00000536218 CSNK1EP49674 416 aaKnown RBP12.63□□□□□ -0.39
LIG1-203ENST00000536218 MECP2P51608 486 aaKnown RBP12.63□□□□□ -0.39
LIG1-203ENST00000536218 ARHGAP11BQ3KRB8 267 aa12.63□□□□□ -0.39
LIG1-203ENST00000536218 PAPD4Q6PIY7 484 aaKnown RBP12.63□□□□□ -0.39
LIG1-203ENST00000536218 PPP1R3BQ86XI6 285 aa12.63□□□□□ -0.39
LIG1-203ENST00000536218 C19orf47Q8N9M1 422 aaKnown RBP12.63□□□□□ -0.39
LIG1-203ENST00000536218 OR52R1Q8NGF1 315 aa12.63□□□□□ -0.39
LIG1-203ENST00000536218 IP6K3Q96PC2 410 aa12.63□□□□□ -0.39
LIG1-203ENST00000536218 FBXL4Q9UKA2 621 aa12.63□□□□□ -0.39
LIG1-203ENST00000536218 CBY1Q9Y3M2 126 aa12.63□□□□□ -0.39
LIG1-203ENST00000536218 H3BSH0 61 aa12.62□□□□□ -0.39
LIG1-203ENST00000536218 TPT1P13693 172 aaKnown RBP12.62□□□□□ -0.39
LIG1-203ENST00000536218 PGAM2P15259 253 aa12.62□□□□□ -0.39
LIG1-203ENST00000536218 EDNRAP25101 427 aa12.62□□□□□ -0.39
LIG1-203ENST00000536218 CD38P28907 300 aa12.62□□□□□ -0.39
LIG1-203ENST00000536218 GFERP55789 205 aa12.62□□□□□ -0.39
LIG1-203ENST00000536218 MRPL2Q5T653 305 aaKnown RBP12.62□□□□□ -0.39
LIG1-203ENST00000536218 TTLL10Q6ZVT0 673 aa12.62□□□□□ -0.39
LIG1-203ENST00000536218 RHOUQ7L0Q8 258 aa12.62□□□□□ -0.39
LIG1-203ENST00000536218 OR4N2Q8NGD1 307 aa12.62□□□□□ -0.39
LIG1-203ENST00000536218 OR5AP2Q8NGF4 316 aa12.62□□□□□ -0.39
LIG1-203ENST00000536218 OR2G2Q8NGZ5 317 aa12.62□□□□□ -0.39
LIG1-203ENST00000536218 MAFIPQ8WZ33 124 aa12.62□□□□□ -0.39
LIG1-203ENST00000536218 PRDM13Q9H4Q3 707 aa12.62□□□□□ -0.39
LIG1-203ENST00000536218 PPP1R14DQ9NXH3 145 aa12.62□□□□□ -0.39
LIG1-203ENST00000536218 GAR1Q9NY12 217 aaKnown RBP12.62□□□□□ -0.39
LIG1-203ENST00000536218 OR5V1Q9UGF6 321 aa12.62□□□□□ -0.39
LIG1-203ENST00000536218 KCNE5Q9UJ90 142 aa12.62□□□□□ -0.39
LIG1-203ENST00000536218 EEF1E1-BLOC1S5C9J1V9 151 aa12.62□□□□□ -0.39
LIG1-203ENST00000536218 CLDN4O14493 209 aa12.62□□□□□ -0.39
LIG1-203ENST00000536218 CDC42EP2O14613 210 aa12.62□□□□□ -0.39
LIG1-203ENST00000536218 FGF16O43320 207 aa12.62□□□□□ -0.39
LIG1-203ENST00000536218 CD3DP04234 171 aa12.62□□□□□ -0.39
LIG1-203ENST00000536218 CSN2P05814 226 aa12.62□□□□□ -0.39
LIG1-203ENST00000536218 DPP4P27487 766 aa12.62□□□□□ -0.39
LIG1-203ENST00000536218 CD34P28906 385 aa12.62□□□□□ -0.39
LIG1-203ENST00000536218 BTG2P78543 158 aa12.62□□□□□ -0.39
LIG1-203ENST00000536218 SMAD4Q13485 552 aaKnown RBP12.62□□□□□ -0.39
LIG1-203ENST00000536218 ZNF345Q14585 488 aa12.62□□□□□ -0.39
LIG1-203ENST00000536218 PRICKLE4Q2TBC4 344 aa12.62□□□□□ -0.39
LIG1-203ENST00000536218 PRAMEF8Q5VWM4 474 aa12.62□□□□□ -0.39
LIG1-203ENST00000536218 PRAMEF7Q5VXH5 474 aa12.62□□□□□ -0.39
LIG1-203ENST00000536218 ZNF620Q6ZNG0 422 aa12.62□□□□□ -0.39
LIG1-203ENST00000536218 OR6N1Q8NGY5 312 aa12.62□□□□□ -0.39
LIG1-203ENST00000536218 ANKRD9Q96BM1 317 aaPredicted RBP12.62□□□□□ -0.39
LIG1-203ENST00000536218 ATG101Q9BSB4 218 aa12.62□□□□□ -0.39
LIG1-203ENST00000536218 SMOC1Q9H4F8 434 aa12.62□□□□□ -0.39
LIG1-203ENST00000536218 FBXL21Q9UKT6 434 aa12.62□□□□□ -0.39
LIG1-203ENST00000536218 UNC13CQ8NB66 2214 aa12.62□□□□□ -0.39
LIG1-203ENST00000536218 TSTD3H0UI37 97 aa12.61□□□□□ -0.39
LIG1-203ENST00000536218 ZNF85Q03923 595 aa12.61□□□□□ -0.39
LIG1-203ENST00000536218 ACTBL2Q562R1 376 aa12.61□□□□□ -0.39
LIG1-203ENST00000536218 PWWP2BQ6NUJ5 590 aa12.61□□□□□ -0.39
LIG1-203ENST00000536218 OR51L1Q8NGJ5 315 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms