RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 BDKRB1P46663 353 aa3.95□□□□□ -1.78
CD44-220ENST00000525688 GNPDA1P46926 289 aa3.95□□□□□ -1.78
CD44-220ENST00000525688 ALDH3B2P48448 385 aa3.95□□□□□ -1.78
CD44-220ENST00000525688 XGP55808 180 aa3.95□□□□□ -1.78
CD44-220ENST00000525688 NTHL1P78549 312 aa3.95□□□□□ -1.78
CD44-220ENST00000525688 TMEM249Q2WGJ8 235 aa3.95□□□□□ -1.78
CD44-220ENST00000525688 ZNF876PQ49A33 203 aa3.95□□□□□ -1.78
CD44-220ENST00000525688 SPANXN4Q5MJ08 99 aa3.95□□□□□ -1.78
CD44-220ENST00000525688 CEP85LQ5SZL2 805 aa3.95□□□□□ -1.78
CD44-220ENST00000525688 LRRC31Q6UY01 552 aa3.95□□□□□ -1.78
CD44-220ENST00000525688 LINC00336Q6ZUF6 198 aa3.95□□□□□ -1.78
CD44-220ENST00000525688 RFPL4BQ6ZWI9 263 aa3.95□□□□□ -1.78
CD44-220ENST00000525688 OR2W3Q7Z3T1 314 aa3.95□□□□□ -1.78
CD44-220ENST00000525688 PTAR1Q7Z6K3 402 aaPredicted RBP3.95□□□□□ -1.78
CD44-220ENST00000525688 NR2C2APQ86WQ0 139 aa3.95□□□□□ -1.78
CD44-220ENST00000525688 HOGA1Q86XE5 327 aa3.95□□□□□ -1.78
CD44-220ENST00000525688 TMEM25Q86YD3 366 aa3.95□□□□□ -1.78
CD44-220ENST00000525688 FBXO16Q8IX29 292 aaPredicted RBP3.95□□□□□ -1.78
CD44-220ENST00000525688 SLC22A15Q8IZD6 547 aa3.95□□□□□ -1.78
CD44-220ENST00000525688 LINC00518Q8N0U6 118 aa3.95□□□□□ -1.78
CD44-220ENST00000525688 CCDC71LQ8N9Z2 235 aa3.95□□□□□ -1.78
CD44-220ENST00000525688 ZNF738Q8NE65 137 aa3.95□□□□□ -1.78
CD44-220ENST00000525688 OR6Q1Q8NGQ2 317 aa3.95□□□□□ -1.78
CD44-220ENST00000525688 OR1B1Q8NGR6 318 aa3.95□□□□□ -1.78
CD44-220ENST00000525688 ACTL9Q8TC94 416 aa3.95□□□□□ -1.78
CD44-220ENST00000525688 MRGPRDQ8TDS7 321 aa3.95□□□□□ -1.78
CD44-220ENST00000525688 GPR148Q8TDV2 347 aa3.95□□□□□ -1.78
CD44-220ENST00000525688 PHF10Q8WUB8 498 aaKnown RBP3.95□□□□□ -1.78
CD44-220ENST00000525688 UBE2E3Q969T4 207 aa3.95□□□□□ -1.78
CD44-220ENST00000525688 APH1AQ96BI3 265 aa3.95□□□□□ -1.78
CD44-220ENST00000525688 GMPPAQ96IJ6 420 aaPredicted RBP3.95□□□□□ -1.78
CD44-220ENST00000525688 KCNA7Q96RP8 456 aa3.95□□□□□ -1.78
CD44-220ENST00000525688 TIMM29Q9BSF4 260 aa3.95□□□□□ -1.78
CD44-220ENST00000525688 FEM1AQ9BSK4 669 aa3.95□□□□□ -1.78
CD44-220ENST00000525688 HOXD1Q9GZZ0 328 aa3.95□□□□□ -1.78
CD44-220ENST00000525688 COMMD4Q9H0A8 199 aa3.95□□□□□ -1.78
CD44-220ENST00000525688 PPA2Q9H2U2 334 aa3.95□□□□□ -1.78
CD44-220ENST00000525688 ALG9Q9H6U8 611 aa3.95□□□□□ -1.78
CD44-220ENST00000525688 HRASLSQ9HDD0 168 aa3.95□□□□□ -1.78
CD44-220ENST00000525688 PLEKHJ1Q9NW61 149 aa3.95□□□□□ -1.78
CD44-220ENST00000525688 C1orf109Q9NX04 203 aa3.95□□□□□ -1.78
CD44-220ENST00000525688 MRPS28Q9Y2Q9 187 aaKnown RBP3.95□□□□□ -1.78
CD44-220ENST00000525688 Q9Y3F1 56 aa3.95□□□□□ -1.78
CD44-220ENST00000525688 MYH6P13533 1939 aa3.95□□□□□ -1.78
CD44-220ENST00000525688 A0A0C4DFX4 3053 aa3.94□□□□□ -1.78
CD44-220ENST00000525688 CHD7Q9P2D1 2997 aa3.94□□□□□ -1.78
CD44-220ENST00000525688 NSG1A0A0A6YYJ2 146 aa3.94□□□□□ -1.78
CD44-220ENST00000525688 A0A1W2PQL4 384 aaPredicted RBP3.94□□□□□ -1.78
CD44-220ENST00000525688 MEIOCA2RUB1 952 aa3.94□□□□□ -1.78
CD44-220ENST00000525688 SLC22A20A6NK97 555 aa3.94□□□□□ -1.78
CD44-220ENST00000525688 KRTAP29-1A8MX34 341 aaPredicted RBP3.94□□□□□ -1.78
CD44-220ENST00000525688 TMEM238C9JI98 176 aa3.94□□□□□ -1.78
CD44-220ENST00000525688 G3V4G9 280 aa3.94□□□□□ -1.78
CD44-220ENST00000525688 ZNF195O14628 629 aa3.94□□□□□ -1.78
CD44-220ENST00000525688 TNFSF11O14788 317 aa3.94□□□□□ -1.78
CD44-220ENST00000525688 SURF4O15260 269 aa3.94□□□□□ -1.78
CD44-220ENST00000525688 SGCEO43556 437 aa3.94□□□□□ -1.78
CD44-220ENST00000525688 RCBTB2O95199 551 aa3.94□□□□□ -1.78
CD44-220ENST00000525688 PSMG1O95456 288 aa3.94□□□□□ -1.78
CD44-220ENST00000525688 FGF19O95750 216 aa3.94□□□□□ -1.78
CD44-220ENST00000525688 CD160O95971 181 aa3.94□□□□□ -1.78
CD44-220ENST00000525688 MBL2P11226 248 aaPredicted RBP3.94□□□□□ -1.78
CD44-220ENST00000525688 IDO1P14902 403 aa3.94□□□□□ -1.78
CD44-220ENST00000525688 GATA1P15976 413 aaPredicted RBP3.94□□□□□ -1.78
CD44-220ENST00000525688 HLA-GP17693 338 aa3.94□□□□□ -1.78
CD44-220ENST00000525688 PSMC3P17980 439 aa3.94□□□□□ -1.78
CD44-220ENST00000525688 XRCC1P18887 633 aaPredicted RBP3.94□□□□□ -1.78
CD44-220ENST00000525688 IDSP22304 550 aa3.94□□□□□ -1.78
CD44-220ENST00000525688 IFNA8P32881 189 aa3.94□□□□□ -1.78
CD44-220ENST00000525688 TNFSF9P41273 254 aa3.94□□□□□ -1.78
CD44-220ENST00000525688 NSG1P42857 185 aa3.94□□□□□ -1.78
CD44-220ENST00000525688 SLC1A1P43005 524 aa3.94□□□□□ -1.78
CD44-220ENST00000525688 QARSP47897 775 aaKnown RBP3.94□□□□□ -1.78
CD44-220ENST00000525688 CSNK1A1P48729 337 aa3.94□□□□□ -1.78
CD44-220ENST00000525688 PRLHRP49683 370 aa3.94□□□□□ -1.78
CD44-220ENST00000525688 NKX2-5P52952 324 aaPredicted RBP3.94□□□□□ -1.78
CD44-220ENST00000525688 RAB4BP61018 213 aa3.94□□□□□ -1.78
CD44-220ENST00000525688 RPS15AP62244 130 aaKnown RBP3.94□□□□□ -1.78
CD44-220ENST00000525688 ZNF33AQ06730 810 aa3.94□□□□□ -1.78
CD44-220ENST00000525688 SCRN3Q0VDG4 424 aa3.94□□□□□ -1.78
CD44-220ENST00000525688 TMED2Q15363 201 aa3.94□□□□□ -1.78
CD44-220ENST00000525688 LRRC26Q2I0M4 334 aa3.94□□□□□ -1.78
CD44-220ENST00000525688 ISXQ2M1V0 245 aa3.94□□□□□ -1.78
CD44-220ENST00000525688 RPEL1Q2QD12 228 aa3.94□□□□□ -1.78
CD44-220ENST00000525688 YIF1BQ5BJH7 314 aa3.94□□□□□ -1.78
CD44-220ENST00000525688 DMRTC1Q5HYR2 192 aa3.94□□□□□ -1.78
CD44-220ENST00000525688 SOHLH1Q5JUK2 328 aa3.94□□□□□ -1.78
CD44-220ENST00000525688 BEND6Q5SZJ8 279 aaPredicted RBP3.94□□□□□ -1.78
CD44-220ENST00000525688 ADAMTSL4-AS1Q5T5F5 129 aa3.94□□□□□ -1.78
CD44-220ENST00000525688 IDNKQ5T6J7 187 aa3.94□□□□□ -1.78
CD44-220ENST00000525688 C1orf189Q5VU69 101 aa3.94□□□□□ -1.78
CD44-220ENST00000525688 SPOPLQ6IQ16 392 aa3.94□□□□□ -1.78
CD44-220ENST00000525688 ACSM5Q6NUN0 579 aa3.94□□□□□ -1.78
CD44-220ENST00000525688 CERS6Q6ZMG9 384 aa3.94□□□□□ -1.78
CD44-220ENST00000525688 TIPARPQ7Z3E1 657 aaKnown RBP3.94□□□□□ -1.78
CD44-220ENST00000525688 SLC35F2Q8IXU6 374 aa3.94□□□□□ -1.78
CD44-220ENST00000525688 C10orf67Q8IYJ2 551 aa3.94□□□□□ -1.78
CD44-220ENST00000525688 CYP4Z2PQ8N1L4 340 aa3.94□□□□□ -1.78
CD44-220ENST00000525688 SLC39A11Q8N1S5 342 aa3.94□□□□□ -1.78
CD44-220ENST00000525688 RAB42Q8N4Z0 105 aa3.94□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms