RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 SLC18B1Q6NT16 456 aa14.45□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 GKN2Q86XP6 184 aa14.45□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 ADGRG3Q86Y34 549 aa14.45□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 MUC20Q8N307 709 aaPredicted RBP14.45□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 CLEC1AQ8NC01 280 aa14.45□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 OR1J4Q8NGS1 313 aa14.45□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 THRSPQ92748 146 aa14.45□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 REG4Q9BYZ8 158 aa14.45□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 CHST6Q9GZX3 395 aa14.45□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 SLC17A5Q9NRA2 495 aa14.45□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 DCAF16Q9NXF7 216 aa14.45□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 TMED7-TICAM2A0A0A6YYA0 188 aa14.44□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 TCRBV16S1A1N1A0A5B0 115 aa14.44□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 NUDT14O95848 222 aa14.44□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 CD3DP04234 171 aa14.44□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 RLN1P04808 185 aa14.44□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 FCER2P06734 321 aa14.44□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 SP9P0CG40 484 aa14.44□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 CD37P11049 281 aa14.44□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 GP1BBP13224 206 aa14.44□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 PGCP20142 388 aa14.44□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 PRSS3P35030 304 aa14.44□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 MAP2K6P52564 334 aa14.44□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 SEC61A1P61619 476 aaKnown RBP14.44□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 DCAF7P61962 342 aa14.44□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 OC90Q02509 493 aaPredicted RBP14.44□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 HLXQ14774 488 aaPredicted RBP14.44□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 TMEM225Q6GV28 225 aa14.44□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 PLPP7Q8NBV4 271 aa14.44□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 OR2AK2Q8NG84 335 aa14.44□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 GPX8Q8TED1 209 aa14.44□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 ASB5Q8WWX0 329 aa14.44□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 DVL3Q92997 716 aaPredicted RBP14.44□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 INTS12Q96CB8 462 aaKnown RBP14.44□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 SLC6A15Q9H2J7 730 aa14.44□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 TXNIPQ9H3M7 391 aa14.44□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 IFT46Q9NQC8 304 aa14.44□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 FAM86C1Q9NVL1 165 aa14.44□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 TMED7Q9Y3B3 224 aa14.44□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 FREM3P0C091 2139 aa14.44□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 A0A1W2PR77 199 aa14.43□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 SLC22A23A1A5C7 686 aa14.43□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 IGFBP3P17936 291 aaPredicted RBP14.43□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 DCAF12L2Q5VW00 463 aa14.43□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 NDUFAF7Q7L592 441 aa14.43□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 CATSPERDQ86XM0 798 aa14.43□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 OR2I1PQ8NGU4 316 aa14.43□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 RBPMSQ93062 196 aaKnown RBP14.43□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 ABHD6Q9BV23 337 aa14.43□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 ASXL3Q9C0F0 2248 aa14.43□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 UBE2QL1A1L167 161 aa14.43□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 HMSDA8MTL9 139 aa14.43□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 METTL12A8MUP2 240 aa14.43□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 PLPP3O14495 311 aa14.43□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 SRSF10O75494 262 aaKnown RBP14.43□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 SLC25A12O75746 678 aa14.43□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 ZNF35P13682 527 aa14.43□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 DEFB133Q30KQ1 61 aa14.43□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 VWA2Q5GFL6 755 aa14.43□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 ARHGAP40Q5TG30 622 aa14.43□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 TMEM81Q6P7N7 255 aa14.43□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 CORO6Q6QEF8 472 aa14.43□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 ZNF704Q6ZNC4 412 aaPredicted RBP14.43□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 DBX2Q6ZNG2 339 aa14.43□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 KRT77Q7Z794 578 aa14.43□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 SLC22A8Q8TCC7 542 aa14.43□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 RELTQ969Z4 430 aa14.43□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 TBL1XR1Q9BZK7 514 aa14.43□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 WWTR1Q9GZV5 400 aa14.43□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 ATG5Q9H1Y0 275 aa14.43□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 APMAPQ9HDC9 416 aa14.43□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 ZNF224Q9NZL3 707 aa14.43□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 CDV3Q9UKY7 258 aaKnown RBP14.43□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 GTF2A1LQ9UNN4 478 aa14.43□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 DHDHQ9UQ10 334 aa14.43□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 KIF26BQ2KJY2 2108 aa14.43□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 ARID1BQ8NFD5 2236 aaPredicted RBP14.43□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 ZNF292O60281 2723 aa14.42□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 PRSS44E7EML9 344 aa14.42□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 ADAM10O14672 748 aa14.42□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 FADS1O60427 444 aa14.42□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 SDC3O75056 442 aa14.42□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 SNAPC5O75971 98 aa14.42□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 OR6A2O95222 327 aa14.42□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 MPZL1O95297 269 aa14.42□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 IGHMP01871 453 aa14.42□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 ACSM4P0C7M7 580 aa14.42□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 ABCD3P28288 659 aa14.42□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 POLR2HP52434 150 aaKnown RBP14.42□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 ADAM8P78325 824 aa14.42□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 PLCXD2Q0VAA5 305 aa14.42□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 TOMM20Q15388 145 aa14.42□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 C1orf140Q5VVS0 124 aa14.42□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 STEAP1BQ6NZ63 245 aa14.42□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 TMUB2Q71RG4 321 aa14.42□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 OR8S1Q8NH09 359 aa14.42□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 FAM174AQ8TBP5 190 aa14.42□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 GPR119Q8TDV5 335 aa14.42□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 SEH1LQ96EE3 360 aa14.42□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 RAB33BQ9H082 229 aa14.42□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms