RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 HSF2Q03933 536 aa13.75□□□□□ -0.21
VIM-208ENST00000497849 CDK5R2Q13319 367 aa13.75□□□□□ -0.21
VIM-208ENST00000497849 MELKQ14680 651 aa13.75□□□□□ -0.21
VIM-208ENST00000497849 FAM189A2Q15884 450 aa13.75□□□□□ -0.21
VIM-208ENST00000497849 C2orf68Q2NKX9 166 aa13.75□□□□□ -0.21
VIM-208ENST00000497849 RUSC1-AS1Q66K80 236 aa13.75□□□□□ -0.21
VIM-208ENST00000497849 C10orf53Q8N6V4 93 aa13.75□□□□□ -0.21
VIM-208ENST00000497849 OR5J2Q8NH18 312 aa13.75□□□□□ -0.21
VIM-208ENST00000497849 OR10A6Q8NH74 314 aa13.75□□□□□ -0.21
VIM-208ENST00000497849 SAMD8Q96LT4 415 aa13.75□□□□□ -0.21
VIM-208ENST00000497849 POMT1Q9Y6A1 747 aa13.75□□□□□ -0.21
VIM-208ENST00000497849 TENM3Q9P273 2699 aa13.75□□□□□ -0.21
VIM-208ENST00000497849 A0A0B4J2E0 115 aa13.74□□□□□ -0.21
VIM-208ENST00000497849 A0A1B0GX12 115 aa13.74□□□□□ -0.21
VIM-208ENST00000497849 C5orf49A4QMS7 147 aa13.74□□□□□ -0.21
VIM-208ENST00000497849 PPIBP23284 216 aaKnown RBP13.74□□□□□ -0.21
VIM-208ENST00000497849 HIST3H3Q16695 136 aa13.74□□□□□ -0.21
VIM-208ENST00000497849 ZMAT1Q5H9K5 638 aa13.74□□□□□ -0.21
VIM-208ENST00000497849 MTX3Q5HYI7 312 aa13.74□□□□□ -0.21
VIM-208ENST00000497849 GCNT6Q5T4J0 391 aa13.74□□□□□ -0.21
VIM-208ENST00000497849 C8orf82Q6P1X6 216 aaPredicted RBP13.74□□□□□ -0.21
VIM-208ENST00000497849 REC114Q7Z4M0 266 aa13.74□□□□□ -0.21
VIM-208ENST00000497849 PTOV1Q86YD1 416 aa13.74□□□□□ -0.21
VIM-208ENST00000497849 SLC15A3Q8IY34 581 aa13.74□□□□□ -0.21
VIM-208ENST00000497849 HIPK4Q8NE63 616 aa13.74□□□□□ -0.21
VIM-208ENST00000497849 NFKBIDQ8NI38 313 aa13.74□□□□□ -0.21
VIM-208ENST00000497849 ABHD4Q8TB40 342 aa13.74□□□□□ -0.21
VIM-208ENST00000497849 DYRK2Q92630 601 aa13.74□□□□□ -0.21
VIM-208ENST00000497849 MCHR2Q969V1 340 aa13.74□□□□□ -0.21
VIM-208ENST00000497849 SLC7A6OSQ96CW6 309 aaPredicted RBP13.74□□□□□ -0.21
VIM-208ENST00000497849 FAM71F1Q96KD3 344 aaPredicted RBP13.74□□□□□ -0.21
VIM-208ENST00000497849 SLC19A3Q9BZV2 496 aa13.74□□□□□ -0.21
VIM-208ENST00000497849 RAD21L1Q9H4I0 556 aa13.74□□□□□ -0.21
VIM-208ENST00000497849 KAT8Q9H7Z6 458 aaKnown RBP13.74□□□□□ -0.21
VIM-208ENST00000497849 TAS2R5Q9NYW4 299 aa13.74□□□□□ -0.21
VIM-208ENST00000497849 EIF3KQ9UBQ5 218 aaKnown RBP13.74□□□□□ -0.21
VIM-208ENST00000497849 GMEB1Q9Y692 573 aa13.74□□□□□ -0.21
VIM-208ENST00000497849 NOTCH3Q9UM47 2321 aa13.74□□□□□ -0.21
VIM-208ENST00000497849 COL7A1Q02388 2944 aa13.74□□□□□ -0.21
VIM-208ENST00000497849 TMEM178BH3BS89 294 aa13.73□□□□□ -0.21
VIM-208ENST00000497849 MGRN1O60291 552 aa13.73□□□□□ -0.21
VIM-208ENST00000497849 GPR137BO60478 399 aa13.73□□□□□ -0.21
VIM-208ENST00000497849 TPST1O60507 370 aa13.73□□□□□ -0.21
VIM-208ENST00000497849 TPST2O60704 377 aa13.73□□□□□ -0.21
VIM-208ENST00000497849 NPPAP01160 153 aa13.73□□□□□ -0.21
VIM-208ENST00000497849 BMP2P12643 396 aa13.73□□□□□ -0.21
VIM-208ENST00000497849 ZNF32P17041 273 aa13.73□□□□□ -0.21
VIM-208ENST00000497849 TNFRSF1AP19438 455 aa13.73□□□□□ -0.21
VIM-208ENST00000497849 PRKAR1BP31321 381 aa13.73□□□□□ -0.21
VIM-208ENST00000497849 SLC7A2P52569 658 aa13.73□□□□□ -0.21
VIM-208ENST00000497849 BPIFB3P59826 476 aa13.73□□□□□ -0.21
VIM-208ENST00000497849 PPP1CBP62140 327 aa13.73□□□□□ -0.21
VIM-208ENST00000497849 PSG7Q13046 419 aa13.73□□□□□ -0.21
VIM-208ENST00000497849 FADDQ13158 208 aa13.73□□□□□ -0.21
VIM-208ENST00000497849 GPR157Q5UAW9 335 aa13.73□□□□□ -0.21
VIM-208ENST00000497849 HACD2Q6Y1H2 254 aa13.73□□□□□ -0.21
VIM-208ENST00000497849 Q6ZR03 302 aa13.73□□□□□ -0.21
VIM-208ENST00000497849 KLBQ86Z14 1044 aa13.73□□□□□ -0.21
VIM-208ENST00000497849 MUC20Q8N307 709 aaPredicted RBP13.73□□□□□ -0.21
VIM-208ENST00000497849 OR8J3Q8NGG0 315 aa13.73□□□□□ -0.21
VIM-208ENST00000497849 MRAPQ8TCY5 172 aa13.73□□□□□ -0.21
VIM-208ENST00000497849 ZNF583Q96ND8 569 aa13.73□□□□□ -0.21
VIM-208ENST00000497849 ZNF347Q96SE7 839 aa13.73□□□□□ -0.21
VIM-208ENST00000497849 ECSITQ9BQ95 431 aa13.73□□□□□ -0.21
VIM-208ENST00000497849 WFDC6Q9BQY6 131 aa13.73□□□□□ -0.21
VIM-208ENST00000497849 BTBD10Q9BSF8 475 aa13.73□□□□□ -0.21
VIM-208ENST00000497849 TMEM43Q9BTV4 400 aa13.73□□□□□ -0.21
VIM-208ENST00000497849 TMEM165Q9HC07 324 aa13.73□□□□□ -0.21
VIM-208ENST00000497849 PPP1R3CQ9UQK1 317 aa13.73□□□□□ -0.21
VIM-208ENST00000497849 NME4O00746 187 aa13.72□□□□□ -0.21
VIM-208ENST00000497849 TNFRSF13BO14836 293 aaPredicted RBP13.72□□□□□ -0.21
VIM-208ENST00000497849 GYG2O15488 501 aa13.72□□□□□ -0.21
VIM-208ENST00000497849 ICMTO60725 284 aa13.72□□□□□ -0.21
VIM-208ENST00000497849 OR6A2O95222 327 aa13.72□□□□□ -0.21
VIM-208ENST00000497849 MT-ATP6P00846 226 aa13.72□□□□□ -0.21
VIM-208ENST00000497849 CSF1P09603 554 aa13.72□□□□□ -0.21
VIM-208ENST00000497849 VSIG8P0DPA2 414 aa13.72□□□□□ -0.21
VIM-208ENST00000497849 RPS2P15880 293 aaKnown RBP13.72□□□□□ -0.21
VIM-208ENST00000497849 FGF12P61328 243 aa13.72□□□□□ -0.21
VIM-208ENST00000497849 GNB2P62879 340 aa13.72□□□□□ -0.21
VIM-208ENST00000497849 CDK6Q00534 326 aa13.72□□□□□ -0.21
VIM-208ENST00000497849 LIPEQ05469 1076 aa13.72□□□□□ -0.21
VIM-208ENST00000497849 OR1Q1Q15612 314 aa13.72□□□□□ -0.21
VIM-208ENST00000497849 CYP51A1Q16850 503 aa13.72□□□□□ -0.21
VIM-208ENST00000497849 Q6ZSV7 163 aa13.72□□□□□ -0.21
VIM-208ENST00000497849 CALHM3Q86XJ0 350 aa13.72□□□□□ -0.21
VIM-208ENST00000497849 AKR7LQ8NHP1 331 aa13.72□□□□□ -0.21
VIM-208ENST00000497849 BBS10Q8TAM1 723 aa13.72□□□□□ -0.21
VIM-208ENST00000497849 ITLN1Q8WWA0 313 aa13.72□□□□□ -0.21
VIM-208ENST00000497849 SSMEM1Q8WWF3 244 aa13.72□□□□□ -0.21
VIM-208ENST00000497849 HOPXQ9BPY8 73 aaPredicted RBP13.72□□□□□ -0.21
VIM-208ENST00000497849 NUDT16L1Q9BRJ7 211 aaKnown RBP13.72□□□□□ -0.21
VIM-208ENST00000497849 C1orf21Q9H246 121 aa13.72□□□□□ -0.21
VIM-208ENST00000497849 A4GALTQ9NPC4 353 aa13.72□□□□□ -0.21
VIM-208ENST00000497849 THUMPD1Q9NXG2 353 aaKnown RBP13.72□□□□□ -0.21
VIM-208ENST00000497849 TAS2R1Q9NYW7 299 aa13.72□□□□□ -0.21
VIM-208ENST00000497849 CORO2BQ9UQ03 480 aa13.72□□□□□ -0.21
VIM-208ENST00000497849 TMEM247A6NEH6 219 aa13.71□□□□□ -0.21
VIM-208ENST00000497849 H3BSA7 217 aa13.71□□□□□ -0.21
VIM-208ENST00000497849 TIMM8AO60220 97 aaPredicted RBP13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms