RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 RNASE2P10153 161 aaKnown RBP1.37□□□□□ -2.19
CPSF3-205ENST00000489629 TROVE2P10155 538 aaKnown RBP eCLIP1.37□□□□□ -2.19
CPSF3-205ENST00000489629 FOXN2P32314 431 aa1.37□□□□□ -2.19
CPSF3-205ENST00000489629 NAA10P41227 235 aaPredicted RBP1.37□□□□□ -2.19
CPSF3-205ENST00000489629 TNNT2P45379 298 aaPredicted RBP1.37□□□□□ -2.19
CPSF3-205ENST00000489629 MXD1Q05195 221 aa1.37□□□□□ -2.19
CPSF3-205ENST00000489629 LIPEQ05469 1076 aa1.37□□□□□ -2.19
CPSF3-205ENST00000489629 MERTKQ12866 999 aa1.37□□□□□ -2.19
CPSF3-205ENST00000489629 ECH1Q13011 328 aa1.37□□□□□ -2.19
CPSF3-205ENST00000489629 CLINT1Q14677 625 aa1.37□□□□□ -2.19
CPSF3-205ENST00000489629 POU2AF1Q16633 256 aa1.37□□□□□ -2.19
CPSF3-205ENST00000489629 PPM1LQ5SGD2 360 aa1.37□□□□□ -2.19
CPSF3-205ENST00000489629 ANKRD22Q5VYY1 191 aa1.37□□□□□ -2.19
CPSF3-205ENST00000489629 TMEM53Q6P2H8 277 aa1.37□□□□□ -2.19
CPSF3-205ENST00000489629 CERS6Q6ZMG9 384 aa1.37□□□□□ -2.19
CPSF3-205ENST00000489629 TEX43Q6ZNM6 134 aa1.37□□□□□ -2.19
CPSF3-205ENST00000489629 FAM92BQ6ZTR7 304 aa1.37□□□□□ -2.19
CPSF3-205ENST00000489629 BZW1Q7L1Q6 419 aaKnown RBP1.37□□□□□ -2.19
CPSF3-205ENST00000489629 SLC16A14Q7RTX9 510 aa1.37□□□□□ -2.19
CPSF3-205ENST00000489629 SCD5Q86SK9 330 aa1.37□□□□□ -2.19
CPSF3-205ENST00000489629 KATNAL2Q8IYT4 538 aa1.37□□□□□ -2.19
CPSF3-205ENST00000489629 LIX1Q8N485 282 aa1.37□□□□□ -2.19
CPSF3-205ENST00000489629 ARRDC1Q8N5I2 433 aa1.37□□□□□ -2.19
CPSF3-205ENST00000489629 PQLC3Q8N755 202 aa1.37□□□□□ -2.19
CPSF3-205ENST00000489629 C15orf56Q8N910 161 aa1.37□□□□□ -2.19
CPSF3-205ENST00000489629 BPIFCQ8NFQ6 507 aa1.37□□□□□ -2.19
CPSF3-205ENST00000489629 OR4A4PQ8NGN8 299 aa1.37□□□□□ -2.19
CPSF3-205ENST00000489629 OR10J6PQ8NGY7 276 aa1.37□□□□□ -2.19
CPSF3-205ENST00000489629 FAM81AQ8TBF8 368 aa1.37□□□□□ -2.19
CPSF3-205ENST00000489629 SLC7A13Q8TCU3 470 aa1.37□□□□□ -2.19
CPSF3-205ENST00000489629 LKAAEAR1Q8TD35 194 aa1.37□□□□□ -2.19
CPSF3-205ENST00000489629 FAM3DQ96BQ1 224 aa1.37□□□□□ -2.19
CPSF3-205ENST00000489629 CCDC126Q96EE4 140 aa1.37□□□□□ -2.19
CPSF3-205ENST00000489629 PKNOX2Q96KN3 472 aa1.37□□□□□ -2.19
CPSF3-205ENST00000489629 BMFQ96LC9 184 aa1.37□□□□□ -2.19
CPSF3-205ENST00000489629 OR5B12Q96R08 314 aa1.37□□□□□ -2.19
CPSF3-205ENST00000489629 CHAC1Q9BUX1 264 aa1.37□□□□□ -2.19
CPSF3-205ENST00000489629 BEX1Q9HBH7 125 aa1.37□□□□□ -2.19
CPSF3-205ENST00000489629 ST3GAL6Q9Y274 331 aa1.37□□□□□ -2.19
CPSF3-205ENST00000489629 GPR179Q6PRD1 2367 aa1.36□□□□□ -2.19
CPSF3-205ENST00000489629 TRBV9A0A0B4J1U6 114 aa1.36□□□□□ -2.19
CPSF3-205ENST00000489629 IGHV3-74A0A0B4J1X5 117 aa1.36□□□□□ -2.19
CPSF3-205ENST00000489629 TRAV25A0A0B4J276 109 aa1.36□□□□□ -2.19
CPSF3-205ENST00000489629 GLYATL1P3A0A0U1RQE8 302 aa1.36□□□□□ -2.19
CPSF3-205ENST00000489629 ZNF816-ZNF321PA0A0X1KG74 233 aa1.36□□□□□ -2.19
CPSF3-205ENST00000489629 A0A1B0GW55 424 aa1.36□□□□□ -2.19
CPSF3-205ENST00000489629 LRRIQ3A6PVS8 624 aaPredicted RBP1.36□□□□□ -2.19
CPSF3-205ENST00000489629 BET1O15155 118 aa1.36□□□□□ -2.19
CPSF3-205ENST00000489629 EIF4E2O60573 245 aaKnown RBP1.36□□□□□ -2.19
CPSF3-205ENST00000489629 DPM1O60762 260 aa1.36□□□□□ -2.19
CPSF3-205ENST00000489629 WBP4O75554 376 aaKnown RBP1.36□□□□□ -2.19
CPSF3-205ENST00000489629 SRP72O76094 671 aaKnown RBP1.36□□□□□ -2.19
CPSF3-205ENST00000489629 SERPINA5P05154 406 aa1.36□□□□□ -2.19
CPSF3-205ENST00000489629 FABP3P05413 133 aa1.36□□□□□ -2.19
CPSF3-205ENST00000489629 ERCC1P07992 297 aaPredicted RBP1.36□□□□□ -2.19
CPSF3-205ENST00000489629 ACSM4P0C7M7 580 aa1.36□□□□□ -2.19
CPSF3-205ENST00000489629 DUX4L2P0CJ85 424 aa1.36□□□□□ -2.19
CPSF3-205ENST00000489629 DUX4L3P0CJ86 424 aa1.36□□□□□ -2.19
CPSF3-205ENST00000489629 DUX4L5P0CJ88 424 aa1.36□□□□□ -2.19
CPSF3-205ENST00000489629 DUX4L6P0CJ89 424 aa1.36□□□□□ -2.19
CPSF3-205ENST00000489629 DUX4L7P0CJ90 424 aa1.36□□□□□ -2.19
CPSF3-205ENST00000489629 CALM1P0DP23 149 aa1.36□□□□□ -2.19
CPSF3-205ENST00000489629 CALM2P0DP24 149 aa1.36□□□□□ -2.19
CPSF3-205ENST00000489629 CALM3P0DP25 149 aa1.36□□□□□ -2.19
CPSF3-205ENST00000489629 ZNF24P17028 368 aa1.36□□□□□ -2.19
CPSF3-205ENST00000489629 BCKDHBP21953 392 aa1.36□□□□□ -2.19
CPSF3-205ENST00000489629 STOMP27105 288 aa1.36□□□□□ -2.19
CPSF3-205ENST00000489629 MAS1LP35410 378 aa1.36□□□□□ -2.19
CPSF3-205ENST00000489629 GPX4P36969 197 aaPredicted RBP1.36□□□□□ -2.19
CPSF3-205ENST00000489629 BRCA1P38398 1863 aaKnown RBP1.36□□□□□ -2.19
CPSF3-205ENST00000489629 NBL1P41271 181 aa1.36□□□□□ -2.19
CPSF3-205ENST00000489629 NAMPTP43490 491 aa1.36□□□□□ -2.19
CPSF3-205ENST00000489629 CYB561P49447 251 aa1.36□□□□□ -2.19
CPSF3-205ENST00000489629 RND2P52198 227 aa1.36□□□□□ -2.19
CPSF3-205ENST00000489629 ZNF138P52744 262 aa1.36□□□□□ -2.19
CPSF3-205ENST00000489629 RAB10P61026 200 aa1.36□□□□□ -2.19
CPSF3-205ENST00000489629 UBE2MP61081 183 aaKnown RBP1.36□□□□□ -2.19
CPSF3-205ENST00000489629 ADARB1P78563 741 aaKnown RBP1.36□□□□□ -2.19
CPSF3-205ENST00000489629 PRPSAP1Q14558 356 aa1.36□□□□□ -2.19
CPSF3-205ENST00000489629 ZNF726P1Q15940 193 aa1.36□□□□□ -2.19
CPSF3-205ENST00000489629 ZSCAN26Q16670 478 aa1.36□□□□□ -2.19
CPSF3-205ENST00000489629 HES5Q5TA89 166 aa1.36□□□□□ -2.19
CPSF3-205ENST00000489629 C22orf42Q6IC83 251 aa1.36□□□□□ -2.19
CPSF3-205ENST00000489629 REEP3Q6NUK4 255 aa1.36□□□□□ -2.19
CPSF3-205ENST00000489629 NCCRP1Q6ZVX7 275 aaPredicted RBP1.36□□□□□ -2.19
CPSF3-205ENST00000489629 ABHD13Q7L211 337 aa1.36□□□□□ -2.19
CPSF3-205ENST00000489629 HDDC2Q7Z4H3 204 aa1.36□□□□□ -2.19
CPSF3-205ENST00000489629 CMTM1Q8IZ96 169 aa1.36□□□□□ -2.19
CPSF3-205ENST00000489629 IQCKQ8N0W5 287 aa1.36□□□□□ -2.19
CPSF3-205ENST00000489629 FAM86B1Q8N7N1 296 aa1.36□□□□□ -2.19
CPSF3-205ENST00000489629 PRELID2Q8N945 189 aa1.36□□□□□ -2.19
CPSF3-205ENST00000489629 NOXO1Q8NFA2 376 aa1.36□□□□□ -2.19
CPSF3-205ENST00000489629 OR52E5Q8NH55 327 aa1.36□□□□□ -2.19
CPSF3-205ENST00000489629 ZNF502Q8TBZ5 544 aa1.36□□□□□ -2.19
CPSF3-205ENST00000489629 PEX13Q92968 403 aa1.36□□□□□ -2.19
CPSF3-205ENST00000489629 MCUR1Q96AQ8 359 aa1.36□□□□□ -2.19
CPSF3-205ENST00000489629 CREB3L1Q96BA8 519 aa1.36□□□□□ -2.19
CPSF3-205ENST00000489629 SERPINB12Q96P63 405 aa1.36□□□□□ -2.19
CPSF3-205ENST00000489629 OR2A5Q96R48 311 aa1.36□□□□□ -2.19
CPSF3-205ENST00000489629 ANP32EQ9BTT0 268 aa1.36□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms