RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 FOSL2P15408 326 aa17.05■□□□□ 0.32
VIM-203ENST00000469543 CRABP1P29762 137 aa17.05■□□□□ 0.32
VIM-203ENST00000469543 MYBPHQ13203 477 aa17.05■□□□□ 0.32
VIM-203ENST00000469543 RTN4RL2Q86UN3 420 aa17.05■□□□□ 0.32
VIM-203ENST00000469543 TEX51A0A1B0GUA7 166 aa17.04■□□□□ 0.32
VIM-203ENST00000469543 SLC2A1P11166 492 aa17.04■□□□□ 0.32
VIM-203ENST00000469543 SFTPDP35247 375 aa17.04■□□□□ 0.32
VIM-203ENST00000469543 DCDP81605 110 aaKnown RBP17.04■□□□□ 0.32
VIM-203ENST00000469543 C1QTNF12Q5T7M4 302 aa17.04■□□□□ 0.32
VIM-203ENST00000469543 CARFQ8N187 725 aa17.04■□□□□ 0.32
VIM-203ENST00000469543 FAM46BQ96A09 425 aa17.04■□□□□ 0.32
VIM-203ENST00000469543 PRMT8Q9NR22 394 aaPredicted RBP17.04■□□□□ 0.32
VIM-203ENST00000469543 DIABLOQ9NR28 239 aa17.04■□□□□ 0.32
VIM-203ENST00000469543 B3GAT1Q9P2W7 334 aa17.04■□□□□ 0.32
VIM-203ENST00000469543 MYOTQ9UBF9 498 aa17.04■□□□□ 0.32
VIM-203ENST00000469543 IGLV3-12A0A075B6K2 115 aa17.04■□□□□ 0.32
VIM-203ENST00000469543 LOC100289279A0A1B0GTE1 492 aa17.04■□□□□ 0.32
VIM-203ENST00000469543 HTR2CP28335 458 aa17.04■□□□□ 0.32
VIM-203ENST00000469543 OLFML2AQ68BL7 652 aa17.04■□□□□ 0.32
VIM-203ENST00000469543 FAM166AQ6J272 317 aa17.04■□□□□ 0.32
VIM-203ENST00000469543 KMT5CQ86Y97 462 aa17.04■□□□□ 0.32
VIM-203ENST00000469543 OR4D6Q8NGJ1 314 aa17.04■□□□□ 0.32
VIM-203ENST00000469543 CMBLQ96DG6 245 aa17.04■□□□□ 0.32
VIM-203ENST00000469543 SPACA5Q96QH8 159 aa17.04■□□□□ 0.32
VIM-203ENST00000469543 SPSB2Q99619 263 aa17.04■□□□□ 0.32
VIM-203ENST00000469543 SLX1AQ9BQ83 275 aa17.04■□□□□ 0.32
VIM-203ENST00000469543 CRB3Q9BUF7 120 aa17.04■□□□□ 0.32
VIM-203ENST00000469543 SEC61A2Q9H9S3 476 aa17.04■□□□□ 0.32
VIM-203ENST00000469543 SCP2D1Q9UJQ7 156 aa17.04■□□□□ 0.32
VIM-203ENST00000469543 OR52A1Q9UKL2 312 aa17.04■□□□□ 0.32
VIM-203ENST00000469543 TMA7Q9Y2S6 64 aaKnown RBP17.04■□□□□ 0.32
VIM-203ENST00000469543 A0A1B0GUH1 482 aa17.04■□□□□ 0.32
VIM-203ENST00000469543 A0A1B0GVI7 797 aa17.04■□□□□ 0.32
VIM-203ENST00000469543 M0QYG6 137 aa17.04■□□□□ 0.32
VIM-203ENST00000469543 ELFN2Q5R3F8 820 aa17.04■□□□□ 0.32
VIM-203ENST00000469543 METTL11BQ5VVY1 283 aa17.04■□□□□ 0.32
VIM-203ENST00000469543 DNM1P46Q6ZS02 220 aa17.04■□□□□ 0.32
VIM-203ENST00000469543 POC1BQ8TC44 478 aa17.04■□□□□ 0.32
VIM-203ENST00000469543 CCDC74BQ96LY2 380 aa17.04■□□□□ 0.32
VIM-203ENST00000469543 PTGES2Q9H7Z7 377 aa17.04■□□□□ 0.32
VIM-203ENST00000469543 PRDM6Q9NQX0 595 aa17.04■□□□□ 0.32
VIM-203ENST00000469543 SERINC1Q9NRX5 453 aa17.04■□□□□ 0.32
VIM-203ENST00000469543 PPP4R1LQ9P1A2 415 aa17.04■□□□□ 0.32
VIM-203ENST00000469543 SRPK3Q9UPE1 567 aa17.04■□□□□ 0.32
VIM-203ENST00000469543 SIT1Q9Y3P8 196 aa17.04■□□□□ 0.32
VIM-203ENST00000469543 VSTM2BA6NLU5 285 aa17.03■□□□□ 0.32
VIM-203ENST00000469543 ZNF28P17035 718 aa17.03■□□□□ 0.32
VIM-203ENST00000469543 PTGDSP41222 190 aa17.03■□□□□ 0.32
VIM-203ENST00000469543 OR3A3P47888 321 aa17.03■□□□□ 0.32
VIM-203ENST00000469543 MAP2K6P52564 334 aa17.03■□□□□ 0.32
VIM-203ENST00000469543 H2BFSP57053 126 aa17.03■□□□□ 0.32
VIM-203ENST00000469543 TSPAN5P62079 268 aa17.03■□□□□ 0.32
VIM-203ENST00000469543 ANGPT1Q15389 498 aa17.03■□□□□ 0.32
VIM-203ENST00000469543 PHF19Q5T6S3 580 aa17.03■□□□□ 0.32
VIM-203ENST00000469543 ZNF767PQ75MW2 155 aa17.03■□□□□ 0.32
VIM-203ENST00000469543 EID2Q8N6I1 236 aa17.03■□□□□ 0.32
VIM-203ENST00000469543 C11orf40Q8WZ69 217 aa17.03■□□□□ 0.32
VIM-203ENST00000469543 FGGYQ96C11 551 aa17.03■□□□□ 0.32
VIM-203ENST00000469543 SHDQ96IW2 340 aa17.03■□□□□ 0.32
VIM-203ENST00000469543 SORCS2Q96PQ0 1159 aa17.03■□□□□ 0.32
VIM-203ENST00000469543 MRI1Q9BV20 369 aa17.03■□□□□ 0.32
VIM-203ENST00000469543 B3GNT4Q9C0J1 378 aa17.03■□□□□ 0.32
VIM-203ENST00000469543 METTL7AQ9H8H3 244 aa17.03■□□□□ 0.32
VIM-203ENST00000469543 RPH3AQ9Y2J0 694 aaPredicted RBP17.03■□□□□ 0.32
VIM-203ENST00000469543 EXPH5Q8NEV8 1989 aa17.03■□□□□ 0.32
VIM-203ENST00000469543 NCOR1O75376 2440 aa17.03■□□□□ 0.32
VIM-203ENST00000469543 A0A1W2PQ72 361 aa17.03■□□□□ 0.32
VIM-203ENST00000469543 NAP1L6A6NFF2 107 aa17.03■□□□□ 0.32
VIM-203ENST00000469543 LIPT2A6NK58 231 aa17.03■□□□□ 0.32
VIM-203ENST00000469543 IGHMP01871 453 aa17.03■□□□□ 0.32
VIM-203ENST00000469543 CSN2P05814 226 aa17.03■□□□□ 0.32
VIM-203ENST00000469543 TPOP07202 933 aa17.03■□□□□ 0.32
VIM-203ENST00000469543 PRSS3P35030 304 aa17.03■□□□□ 0.32
VIM-203ENST00000469543 PTGS2P35354 604 aa17.03■□□□□ 0.32
VIM-203ENST00000469543 PSMA6P60900 246 aaKnown RBP17.03■□□□□ 0.32
VIM-203ENST00000469543 GRK1Q15835 563 aa17.03■□□□□ 0.32
VIM-203ENST00000469543 Q7L0L9 218 aa17.03■□□□□ 0.32
VIM-203ENST00000469543 CPEB2Q7Z5Q1 589 aaKnown RBP17.03■□□□□ 0.32
VIM-203ENST00000469543 HIST2H2ABQ8IUE6 130 aaPredicted RBP17.03■□□□□ 0.32
VIM-203ENST00000469543 OR4S1Q8NGB4 309 aa17.03■□□□□ 0.32
VIM-203ENST00000469543 OR10S1Q8NGN2 331 aa17.03■□□□□ 0.32
VIM-203ENST00000469543 MFSD8Q8NHS3 518 aa17.03■□□□□ 0.32
VIM-203ENST00000469543 CHST11Q9NPF2 352 aa17.03■□□□□ 0.32
VIM-203ENST00000469543 RARRES3Q9UL19 164 aa17.03■□□□□ 0.32
VIM-203ENST00000469543 R4GMQ9 66 aa17.03■□□□□ 0.32
VIM-203ENST00000469543 ADAMTS9Q9P2N4 1935 aa17.03■□□□□ 0.32
VIM-203ENST00000469543 LOC400499M0QZD8 3231 aa17.03■□□□□ 0.32
VIM-203ENST00000469543 LEUTXA8MZ59 168 aa17.02■□□□□ 0.32
VIM-203ENST00000469543 SLC22A5O76082 557 aa17.02■□□□□ 0.32
VIM-203ENST00000469543 PDGFBP01127 241 aaPredicted RBP17.02■□□□□ 0.32
VIM-203ENST00000469543 APOBEC1P41238 236 aaKnown RBP17.02■□□□□ 0.32
VIM-203ENST00000469543 DNASE1L1P49184 302 aa17.02■□□□□ 0.32
VIM-203ENST00000469543 SLC22A6Q4U2R8 563 aa17.02■□□□□ 0.32
VIM-203ENST00000469543 RABEPKQ7Z6M1 372 aa17.02■□□□□ 0.32
VIM-203ENST00000469543 ACBD4Q8NC06 268 aa17.02■□□□□ 0.32
VIM-203ENST00000469543 CKLFQ9UBR5 152 aa17.02■□□□□ 0.32
VIM-203ENST00000469543 NPTNQ9Y639 398 aa17.02■□□□□ 0.32
VIM-203ENST00000469543 A0A1B0GTQ1 180 aa17.02■□□□□ 0.31
VIM-203ENST00000469543 PATE3B3GLJ2 98 aa17.02■□□□□ 0.31
VIM-203ENST00000469543 G3V3Y1 287 aa17.02■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 108.6 ms