RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 P2RY4P51582 365 aa11.89□□□□□ -0.51
LIMS1-204ENST00000409441 SIRPAP78324 504 aa11.89□□□□□ -0.51
LIMS1-204ENST00000409441 BAK1Q16611 211 aa11.89□□□□□ -0.51
LIMS1-204ENST00000409441 MS4A18Q3C1V0 323 aa11.89□□□□□ -0.51
LIMS1-204ENST00000409441 TP53I3Q53FA7 332 aa11.89□□□□□ -0.51
LIMS1-204ENST00000409441 ACSM3Q53FZ2 586 aa11.89□□□□□ -0.51
LIMS1-204ENST00000409441 CNIH2Q6PI25 160 aa11.89□□□□□ -0.51
LIMS1-204ENST00000409441 P4HA3Q7Z4N8 544 aa11.89□□□□□ -0.51
LIMS1-204ENST00000409441 KDM8Q8N371 416 aa11.89□□□□□ -0.51
LIMS1-204ENST00000409441 RPRMLQ8N4K4 120 aa11.89□□□□□ -0.51
LIMS1-204ENST00000409441 OR51L1Q8NGJ5 315 aa11.89□□□□□ -0.51
LIMS1-204ENST00000409441 OR6K6Q8NGW6 343 aa11.89□□□□□ -0.51
LIMS1-204ENST00000409441 OR2T4Q8NH00 348 aa11.89□□□□□ -0.51
LIMS1-204ENST00000409441 PRR7Q8TB68 274 aa11.89□□□□□ -0.51
LIMS1-204ENST00000409441 GHSRQ92847 366 aa11.89□□□□□ -0.51
LIMS1-204ENST00000409441 TAS2R5Q9NYW4 299 aa11.89□□□□□ -0.51
LIMS1-204ENST00000409441 SMG1Q96Q15 3661 aaKnown RBP11.89□□□□□ -0.51
LIMS1-204ENST00000409441 A0A1W2PQ09 198 aa11.89□□□□□ -0.51
LIMS1-204ENST00000409441 SELENOFO60613 162 aa11.89□□□□□ -0.51
LIMS1-204ENST00000409441 CYTIPO60759 359 aa11.89□□□□□ -0.51
LIMS1-204ENST00000409441 ARL6IP5O75915 188 aa11.89□□□□□ -0.51
LIMS1-204ENST00000409441 NCR1O76036 304 aa11.89□□□□□ -0.51
LIMS1-204ENST00000409441 HLA-DQB1P01920 261 aa11.89□□□□□ -0.51
LIMS1-204ENST00000409441 CSF3P09919 207 aa11.89□□□□□ -0.51
LIMS1-204ENST00000409441 AHCYP23526 432 aa11.89□□□□□ -0.51
LIMS1-204ENST00000409441 AZGP1P25311 298 aaKnown RBP11.89□□□□□ -0.51
LIMS1-204ENST00000409441 ACVR1BP36896 505 aa11.89□□□□□ -0.51
LIMS1-204ENST00000409441 CA7P43166 264 aa11.89□□□□□ -0.51
LIMS1-204ENST00000409441 PYDC2Q56P42 97 aa11.89□□□□□ -0.51
LIMS1-204ENST00000409441 SEM1Q6ZVN7 128 aa11.89□□□□□ -0.51
LIMS1-204ENST00000409441 RFLNBQ8N5W9 214 aa11.89□□□□□ -0.51
LIMS1-204ENST00000409441 RNF128Q8TEB7 428 aa11.89□□□□□ -0.51
LIMS1-204ENST00000409441 SMAP2Q8WU79 429 aaPredicted RBP11.89□□□□□ -0.51
LIMS1-204ENST00000409441 ZNRF4Q8WWF5 429 aa11.89□□□□□ -0.51
LIMS1-204ENST00000409441 SLC22A4Q9H015 551 aa11.89□□□□□ -0.51
LIMS1-204ENST00000409441 PPP1R3EQ9H7J1 279 aa11.89□□□□□ -0.51
LIMS1-204ENST00000409441 KLHL13Q9P2N7 655 aa11.89□□□□□ -0.51
LIMS1-204ENST00000409441 POLEQ07864 2286 aa11.88□□□□□ -0.51
LIMS1-204ENST00000409441 VAMP5O95183 116 aa11.88□□□□□ -0.51
LIMS1-204ENST00000409441 TACSTD2P09758 323 aa11.88□□□□□ -0.51
LIMS1-204ENST00000409441 GLI4P10075 376 aa11.88□□□□□ -0.51
LIMS1-204ENST00000409441 FCGR2AP12318 317 aa11.88□□□□□ -0.51
LIMS1-204ENST00000409441 UQCRFS1P47985 274 aa11.88□□□□□ -0.51
LIMS1-204ENST00000409441 CENPAP49450 140 aa11.88□□□□□ -0.51
LIMS1-204ENST00000409441 HCCSP53701 268 aa11.88□□□□□ -0.51
LIMS1-204ENST00000409441 RASGEF1BQ0VAM2 473 aa11.88□□□□□ -0.51
LIMS1-204ENST00000409441 DBPQ10586 325 aaPredicted RBP11.88□□□□□ -0.51
LIMS1-204ENST00000409441 PMPCAQ10713 525 aa11.88□□□□□ -0.51
LIMS1-204ENST00000409441 ZNF684Q5T5D7 378 aa11.88□□□□□ -0.51
LIMS1-204ENST00000409441 UNQ9370/PRO34162Q6UXP9 181 aa11.88□□□□□ -0.51
LIMS1-204ENST00000409441 GPAT4Q86UL3 456 aa11.88□□□□□ -0.51
LIMS1-204ENST00000409441 LRRC28Q86X40 367 aaPredicted RBP11.88□□□□□ -0.51
LIMS1-204ENST00000409441 C9orf106Q8NAJ2 232 aa11.88□□□□□ -0.51
LIMS1-204ENST00000409441 ABHD3Q8WU67 409 aa11.88□□□□□ -0.51
LIMS1-204ENST00000409441 OXGR1Q96P68 337 aa11.88□□□□□ -0.51
LIMS1-204ENST00000409441 TSPAN32Q96QS1 320 aa11.88□□□□□ -0.51
LIMS1-204ENST00000409441 RNF122Q9H9V4 155 aa11.88□□□□□ -0.51
LIMS1-204ENST00000409441 RPRD1BQ9NQG5 326 aaKnown RBP11.88□□□□□ -0.51
LIMS1-204ENST00000409441 NPAP1Q9NZP6 1156 aa11.88□□□□□ -0.51
LIMS1-204ENST00000409441 GNG8Q9UK08 70 aa11.88□□□□□ -0.51
LIMS1-204ENST00000409441 COPS3Q9UNS2 423 aa11.88□□□□□ -0.51
LIMS1-204ENST00000409441 RASD1Q9Y272 281 aa11.88□□□□□ -0.51
LIMS1-204ENST00000409441 MEMO1Q9Y316 297 aa11.88□□□□□ -0.51
LIMS1-204ENST00000409441 TRBV2A0A0J9YWF9 115 aa11.87□□□□□ -0.51
LIMS1-204ENST00000409441 LOC102725191A0A1B0GVB3 256 aa11.87□□□□□ -0.51
LIMS1-204ENST00000409441 MBD3L4A6NDZ8 208 aaPredicted RBP11.87□□□□□ -0.51
LIMS1-204ENST00000409441 MBD3L3A6NE82 208 aaPredicted RBP11.87□□□□□ -0.51
LIMS1-204ENST00000409441 MBD3L5A6NJ08 208 aaPredicted RBP11.87□□□□□ -0.51
LIMS1-204ENST00000409441 HSPB2A8KAH6 182 aa11.87□□□□□ -0.51
LIMS1-204ENST00000409441 E9PLN8 166 aa11.87□□□□□ -0.51
LIMS1-204ENST00000409441 C11orf98E9PRG8 122 aa11.87□□□□□ -0.51
LIMS1-204ENST00000409441 CCL21O00585 134 aa11.87□□□□□ -0.51
LIMS1-204ENST00000409441 DVL2O14641 736 aa11.87□□□□□ -0.51
LIMS1-204ENST00000409441 PHYHO14832 338 aa11.87□□□□□ -0.51
LIMS1-204ENST00000409441 TMEM127O75204 238 aa11.87□□□□□ -0.51
LIMS1-204ENST00000409441 TOXO94900 526 aa11.87□□□□□ -0.51
LIMS1-204ENST00000409441 IGHMP01871 453 aa11.87□□□□□ -0.51
LIMS1-204ENST00000409441 F13BP05160 661 aa11.87□□□□□ -0.51
LIMS1-204ENST00000409441 UCHL1P09936 223 aa11.87□□□□□ -0.51
LIMS1-204ENST00000409441 EDNRAP25101 427 aa11.87□□□□□ -0.51
LIMS1-204ENST00000409441 TIMP3P35625 211 aa11.87□□□□□ -0.51
LIMS1-204ENST00000409441 PUDPQ08623 228 aa11.87□□□□□ -0.51
LIMS1-204ENST00000409441 ZP4Q12836 540 aa11.87□□□□□ -0.51
LIMS1-204ENST00000409441 SLC17A1Q14916 467 aa11.87□□□□□ -0.51
LIMS1-204ENST00000409441 RNPS1Q15287 305 aaKnown RBP11.87□□□□□ -0.51
LIMS1-204ENST00000409441 HSPB2Q16082 182 aa11.87□□□□□ -0.51
LIMS1-204ENST00000409441 MESTQ5EB52 335 aa11.87□□□□□ -0.51
LIMS1-204ENST00000409441 IDNKQ5T6J7 187 aa11.87□□□□□ -0.51
LIMS1-204ENST00000409441 EEF1A1P5Q5VTE0 462 aa11.87□□□□□ -0.51
LIMS1-204ENST00000409441 SFXN4Q6P4A7 337 aa11.87□□□□□ -0.51
LIMS1-204ENST00000409441 FAM220AQ7Z4H9 259 aa11.87□□□□□ -0.51
LIMS1-204ENST00000409441 MCEMP1Q8IX19 187 aa11.87□□□□□ -0.51
LIMS1-204ENST00000409441 ADPRHL1Q8NDY3 354 aa11.87□□□□□ -0.51
LIMS1-204ENST00000409441 MBD3L2Q8NHZ7 208 aaPredicted RBP11.87□□□□□ -0.51
LIMS1-204ENST00000409441 ZNF775Q96BV0 537 aaPredicted RBP11.87□□□□□ -0.51
LIMS1-204ENST00000409441 VKORC1Q9BQB6 163 aa11.87□□□□□ -0.51
LIMS1-204ENST00000409441 SF3B5Q9BWJ5 86 aaKnown RBP11.87□□□□□ -0.51
LIMS1-204ENST00000409441 PPIL3Q9H2H8 161 aaKnown RBP11.87□□□□□ -0.51
LIMS1-204ENST00000409441 KLHL9Q9P2J3 617 aa11.87□□□□□ -0.51
LIMS1-204ENST00000409441 B3GAT1Q9P2W7 334 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms