RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 MRPL48Q96GC5 212 aaKnown RBP15.81■□□□□ 0.12
SDC1-203ENST00000403076 ABHD6Q9BV23 337 aa15.81■□□□□ 0.12
SDC1-203ENST00000403076 C1orf198Q9H425 327 aa15.81■□□□□ 0.12
SDC1-203ENST00000403076 ZNF696Q9H7X3 374 aa15.81■□□□□ 0.12
SDC1-203ENST00000403076 INPP5EQ9NRR6 644 aa15.81■□□□□ 0.12
SDC1-203ENST00000403076 CENPMQ9NSP4 180 aa15.81■□□□□ 0.12
SDC1-203ENST00000403076 ERVK13-1Q9NX77 482 aa15.81■□□□□ 0.12
SDC1-203ENST00000403076 KLHDC2Q9Y2U9 406 aa15.81■□□□□ 0.12
SDC1-203ENST00000403076 CHD6Q8TD26 2715 aa15.81■□□□□ 0.12
SDC1-203ENST00000403076 A0A1W2PR80 420 aa15.8■□□□□ 0.12
SDC1-203ENST00000403076 MAGEA13PA6NCF6 341 aa15.8■□□□□ 0.12
SDC1-203ENST00000403076 C16orf97H3BN30 126 aa15.8■□□□□ 0.12
SDC1-203ENST00000403076 RER1O15258 196 aa15.8■□□□□ 0.12
SDC1-203ENST00000403076 UBL3O95164 117 aa15.8■□□□□ 0.12
SDC1-203ENST00000403076 HOXB1P14653 301 aaPredicted RBP15.8■□□□□ 0.12
SDC1-203ENST00000403076 ETV1P50549 477 aa15.8■□□□□ 0.12
SDC1-203ENST00000403076 KCTD18Q6PI47 426 aaPredicted RBP15.8■□□□□ 0.12
SDC1-203ENST00000403076 ZNF322Q6U7Q0 402 aaPredicted RBP15.8■□□□□ 0.12
SDC1-203ENST00000403076 SPATC1Q76KD6 591 aa15.8■□□□□ 0.12
SDC1-203ENST00000403076 SYT9Q86SS6 491 aa15.8■□□□□ 0.12
SDC1-203ENST00000403076 C17orf78Q8N4C9 275 aa15.8■□□□□ 0.12
SDC1-203ENST00000403076 FGFBP3Q8TAT2 258 aa15.8■□□□□ 0.12
SDC1-203ENST00000403076 SNX33Q8WV41 574 aa15.8■□□□□ 0.12
SDC1-203ENST00000403076 MYCBPQ99417 103 aaPredicted RBP15.8■□□□□ 0.12
SDC1-203ENST00000403076 WACQ9BTA9 647 aa15.8■□□□□ 0.12
SDC1-203ENST00000403076 SLC17A5Q9NRA2 495 aa15.8■□□□□ 0.12
SDC1-203ENST00000403076 IKZF2Q9UKS7 526 aa15.8■□□□□ 0.12
SDC1-203ENST00000403076 ERGIC3Q9Y282 383 aa15.8■□□□□ 0.12
SDC1-203ENST00000403076 MRPS14O60783 128 aaKnown RBP15.79■□□□□ 0.12
SDC1-203ENST00000403076 ADRA2AP08913 450 aa15.79■□□□□ 0.12
SDC1-203ENST00000403076 ARR3P36575 388 aa15.79■□□□□ 0.12
SDC1-203ENST00000403076 RAB1AP62820 205 aa15.79■□□□□ 0.12
SDC1-203ENST00000403076 ZNF85Q03923 595 aa15.79■□□□□ 0.12
SDC1-203ENST00000403076 GALEQ14376 348 aa15.79■□□□□ 0.12
SDC1-203ENST00000403076 TAF13Q15543 124 aa15.79■□□□□ 0.12
SDC1-203ENST00000403076 ALDH16A1Q8IZ83 802 aa15.79■□□□□ 0.12
SDC1-203ENST00000403076 ZNF808Q8N4W9 903 aaPredicted RBP15.79■□□□□ 0.12
SDC1-203ENST00000403076 RFLNBQ8N5W9 214 aa15.79■□□□□ 0.12
SDC1-203ENST00000403076 OR52N5Q8NH56 324 aa15.79■□□□□ 0.12
SDC1-203ENST00000403076 S100PBPQ96BU1 408 aa15.79■□□□□ 0.12
SDC1-203ENST00000403076 MAP6Q96JE9 813 aa15.79■□□□□ 0.12
SDC1-203ENST00000403076 ALG8Q9BVK2 526 aa15.79■□□□□ 0.12
SDC1-203ENST00000403076 JAM3Q9BX67 310 aa15.79■□□□□ 0.12
SDC1-203ENST00000403076 ACTR6Q9GZN1 396 aa15.79■□□□□ 0.12
SDC1-203ENST00000403076 PLEK2Q9NYT0 353 aa15.79■□□□□ 0.12
SDC1-203ENST00000403076 CLEC2DQ9UHP7 191 aa15.79■□□□□ 0.12
SDC1-203ENST00000403076 NCOA6Q14686 2063 aaPredicted RBP15.79■□□□□ 0.12
SDC1-203ENST00000403076 A0A087WXM4 84 aa15.78■□□□□ 0.12
SDC1-203ENST00000403076 OR5H1A6NKK0 313 aa15.78■□□□□ 0.12
SDC1-203ENST00000403076 PSMD9O00233 223 aa15.78■□□□□ 0.12
SDC1-203ENST00000403076 MYL12BO14950 172 aa15.78■□□□□ 0.12
SDC1-203ENST00000403076 SGCEO43556 437 aa15.78■□□□□ 0.12
SDC1-203ENST00000403076 CLDN14O95500 239 aa15.78■□□□□ 0.12
SDC1-203ENST00000403076 WNT11O96014 354 aa15.78■□□□□ 0.12
SDC1-203ENST00000403076 HTR1AP08908 422 aa15.78■□□□□ 0.12
SDC1-203ENST00000403076 AGAP20933 346 aa15.78■□□□□ 0.12
SDC1-203ENST00000403076 UGT2B10P36537 528 aa15.78■□□□□ 0.12
SDC1-203ENST00000403076 PLP2Q04941 152 aa15.78■□□□□ 0.12
SDC1-203ENST00000403076 GSG1Q2KHT4 349 aa15.78■□□□□ 0.12
SDC1-203ENST00000403076 ALKBH2Q6NS38 261 aa15.78■□□□□ 0.12
SDC1-203ENST00000403076 ZNF773Q6PK81 442 aa15.78■□□□□ 0.12
SDC1-203ENST00000403076 TMPRSS11AQ6ZMR5 421 aa15.78■□□□□ 0.12
SDC1-203ENST00000403076 CFAP77Q6ZQR2 320 aa15.78■□□□□ 0.12
SDC1-203ENST00000403076 PLEKHG7Q6ZR37 379 aa15.78■□□□□ 0.12
SDC1-203ENST00000403076 SSX6Q7RTT6 188 aa15.78■□□□□ 0.12
SDC1-203ENST00000403076 KRT77Q7Z794 578 aa15.78■□□□□ 0.12
SDC1-203ENST00000403076 HIST2H2ABQ8IUE6 130 aaPredicted RBP15.78■□□□□ 0.12
SDC1-203ENST00000403076 KLHL36Q8N4N3 616 aa15.78■□□□□ 0.12
SDC1-203ENST00000403076 SVOPQ8N4V2 548 aa15.78■□□□□ 0.12
SDC1-203ENST00000403076 AKR7LQ8NHP1 331 aa15.78■□□□□ 0.12
SDC1-203ENST00000403076 ST7LQ8TDW4 575 aa15.78■□□□□ 0.12
SDC1-203ENST00000403076 ITLN2Q8WWU7 325 aaPredicted RBP15.78■□□□□ 0.12
SDC1-203ENST00000403076 RNASE6Q93091 150 aaKnown RBP15.78■□□□□ 0.12
SDC1-203ENST00000403076 MUCL1Q96DR8 90 aa15.78■□□□□ 0.12
SDC1-203ENST00000403076 SLAMF6Q96DU3 332 aa15.78■□□□□ 0.12
SDC1-203ENST00000403076 AMELYQ99218 206 aa15.78■□□□□ 0.12
SDC1-203ENST00000403076 CDCA4Q9BXL8 241 aa15.78■□□□□ 0.12
SDC1-203ENST00000403076 OR2H1Q9GZK4 316 aa15.78■□□□□ 0.12
SDC1-203ENST00000403076 ZNF224Q9NZL3 707 aa15.78■□□□□ 0.12
SDC1-203ENST00000403076 AMDHD2Q9Y303 409 aa15.78■□□□□ 0.12
SDC1-203ENST00000403076 CACNA1CQ13936 2221 aa15.78■□□□□ 0.12
SDC1-203ENST00000403076 H2BFMP0C1H6 154 aa15.78■□□□□ 0.12
SDC1-203ENST00000403076 LIMS3P0CW19 117 aa15.78■□□□□ 0.12
SDC1-203ENST00000403076 LIMS4P0CW20 117 aa15.78■□□□□ 0.12
SDC1-203ENST00000403076 MAP2K4P45985 399 aa15.78■□□□□ 0.12
SDC1-203ENST00000403076 ACTA2P62736 377 aa15.78■□□□□ 0.12
SDC1-203ENST00000403076 ACTG2P63267 376 aa15.78■□□□□ 0.12
SDC1-203ENST00000403076 PSG4Q00888 419 aa15.78■□□□□ 0.12
SDC1-203ENST00000403076 CDSNQ15517 529 aa15.78■□□□□ 0.12
SDC1-203ENST00000403076 FBXL19-AS1Q494R0 122 aa15.78■□□□□ 0.12
SDC1-203ENST00000403076 PABPC1L2AQ5JQF8 200 aa15.78■□□□□ 0.12
SDC1-203ENST00000403076 ZNF774Q6NX45 483 aa15.78■□□□□ 0.12
SDC1-203ENST00000403076 LRRN1Q6UXK5 716 aa15.78■□□□□ 0.12
SDC1-203ENST00000403076 MDP1Q86V88 176 aa15.78■□□□□ 0.12
SDC1-203ENST00000403076 P2RY8Q86VZ1 359 aa15.78■□□□□ 0.12
SDC1-203ENST00000403076 WDR31Q8NA23 367 aa15.78■□□□□ 0.12
SDC1-203ENST00000403076 BOD1Q96IK1 185 aa15.78■□□□□ 0.12
SDC1-203ENST00000403076 SIGLEC11Q96RL6 698 aa15.78■□□□□ 0.12
SDC1-203ENST00000403076 USB1Q9BQ65 265 aaKnown RBP15.78■□□□□ 0.12
SDC1-203ENST00000403076 OBP2BQ9NPH6 170 aa15.78■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 95.7 ms