RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 DBPQ10586 325 aaPredicted RBP18.72■□□□□ 0.59
CLN3-207ENST00000395653 GINS1Q14691 196 aa18.72■□□□□ 0.59
CLN3-207ENST00000395653 MEP1BQ16820 701 aa18.72■□□□□ 0.59
CLN3-207ENST00000395653 OTPQ5XKR4 325 aa18.72■□□□□ 0.59
CLN3-207ENST00000395653 TGIF2LYQ8IUE0 185 aa18.72■□□□□ 0.59
CLN3-207ENST00000395653 WFDC11Q8NEX6 87 aa18.72■□□□□ 0.59
CLN3-207ENST00000395653 PROKR2Q8NFJ6 384 aa18.72■□□□□ 0.59
CLN3-207ENST00000395653 OR10H5Q8NGA6 315 aa18.72■□□□□ 0.59
CLN3-207ENST00000395653 BCL2L14Q9BZR8 327 aa18.72■□□□□ 0.59
CLN3-207ENST00000395653 PLK3Q9H4B4 646 aa18.72■□□□□ 0.59
CLN3-207ENST00000395653 VPS13CQ709C8 3753 aa18.71■□□□□ 0.59
CLN3-207ENST00000395653 C5orf49A4QMS7 147 aa18.71■□□□□ 0.59
CLN3-207ENST00000395653 DOK2O60496 412 aa18.71■□□□□ 0.59
CLN3-207ENST00000395653 CCNOP22674 350 aa18.71■□□□□ 0.59
CLN3-207ENST00000395653 RAD52P43351 418 aa18.71■□□□□ 0.59
CLN3-207ENST00000395653 CDK5Q00535 292 aa18.71■□□□□ 0.59
CLN3-207ENST00000395653 TEKQ02763 1124 aa18.71■□□□□ 0.59
CLN3-207ENST00000395653 ACSM5Q6NUN0 579 aa18.71■□□□□ 0.59
CLN3-207ENST00000395653 VASH1Q7L8A9 365 aaPredicted RBP18.71■□□□□ 0.59
CLN3-207ENST00000395653 OR9Q1Q8NGQ5 310 aa18.71■□□□□ 0.59
CLN3-207ENST00000395653 MRPL24Q96A35 216 aaKnown RBP18.71■□□□□ 0.59
CLN3-207ENST00000395653 BARX1Q9HBU1 254 aaPredicted RBP18.71■□□□□ 0.59
CLN3-207ENST00000395653 SLC25A19Q9HC21 320 aa18.71■□□□□ 0.59
CLN3-207ENST00000395653 PLEK2Q9NYT0 353 aa18.71■□□□□ 0.59
CLN3-207ENST00000395653 ATPIF1Q9UII2 106 aa18.71■□□□□ 0.59
CLN3-207ENST00000395653 KCNG2Q9UJ96 466 aa18.71■□□□□ 0.59
CLN3-207ENST00000395653 HIVEP1P15822 2718 aa18.7■□□□□ 0.58
CLN3-207ENST00000395653 FAM171A2A8MVW0 826 aa18.7■□□□□ 0.58
CLN3-207ENST00000395653 H3BNX3 289 aa18.7■□□□□ 0.58
CLN3-207ENST00000395653 ICMTO60725 284 aa18.7■□□□□ 0.58
CLN3-207ENST00000395653 HLA-DQA2P01906 255 aa18.7■□□□□ 0.58
CLN3-207ENST00000395653 HMGN1P05114 100 aa18.7■□□□□ 0.58
CLN3-207ENST00000395653 FAM157BP0CG42 384 aa18.7■□□□□ 0.58
CLN3-207ENST00000395653 PYCR1P32322 319 aa18.7■□□□□ 0.58
CLN3-207ENST00000395653 EVX1P49640 407 aa18.7■□□□□ 0.58
CLN3-207ENST00000395653 UCP2P55851 309 aa18.7■□□□□ 0.58
CLN3-207ENST00000395653 HIST1H3AP68431 136 aa18.7■□□□□ 0.58
CLN3-207ENST00000395653 MSMPQ1L6U9 139 aa18.7■□□□□ 0.58
CLN3-207ENST00000395653 HIST2H3PS2Q5TEC6 136 aa18.7■□□□□ 0.58
CLN3-207ENST00000395653 UNQ6126/PRO20091Q6UXV3 157 aa18.7■□□□□ 0.58
CLN3-207ENST00000395653 HIST2H3AQ71DI3 136 aa18.7■□□□□ 0.58
CLN3-207ENST00000395653 ZSCAN2Q7Z7L9 614 aaPredicted RBP18.7■□□□□ 0.58
CLN3-207ENST00000395653 GJC3Q8NFK1 279 aa18.7■□□□□ 0.58
CLN3-207ENST00000395653 SEMA6AQ9H2E6 1030 aa18.7■□□□□ 0.58
CLN3-207ENST00000395653 KRT84Q9NSB2 600 aa18.7■□□□□ 0.58
CLN3-207ENST00000395653 MRPL22Q9NWU5 206 aaKnown RBP18.7■□□□□ 0.58
CLN3-207ENST00000395653 EIF3KQ9UBQ5 218 aaKnown RBP18.7■□□□□ 0.58
CLN3-207ENST00000395653 LHFPL6Q9Y693 200 aa18.7■□□□□ 0.58
CLN3-207ENST00000395653 TMEM129A0AVI4 362 aa18.69■□□□□ 0.58
CLN3-207ENST00000395653 IGHV4-39P01824 125 aa18.69■□□□□ 0.58
CLN3-207ENST00000395653 SPI1P17947 270 aa18.69■□□□□ 0.58
CLN3-207ENST00000395653 HTR5AP47898 357 aa18.69■□□□□ 0.58
CLN3-207ENST00000395653 CRISP1P54107 249 aa18.69■□□□□ 0.58
CLN3-207ENST00000395653 ESRRGP62508 458 aa18.69■□□□□ 0.58
CLN3-207ENST00000395653 RAB35Q15286 201 aa18.69■□□□□ 0.58
CLN3-207ENST00000395653 CCDC92Q53HC0 331 aaPredicted RBP18.69■□□□□ 0.58
CLN3-207ENST00000395653 KDM4DQ6B0I6 523 aa18.69■□□□□ 0.58
CLN3-207ENST00000395653 RGS7BPQ6MZT1 257 aaPredicted RBP18.69■□□□□ 0.58
CLN3-207ENST00000395653 C1orf174Q8IYL3 243 aa18.69■□□□□ 0.58
CLN3-207ENST00000395653 ZNRF4Q8WWF5 429 aa18.69■□□□□ 0.58
CLN3-207ENST00000395653 DOK1Q99704 481 aa18.69■□□□□ 0.58
CLN3-207ENST00000395653 TEX12Q9BXU0 123 aa18.69■□□□□ 0.58
CLN3-207ENST00000395653 MRPL37Q9BZE1 423 aaKnown RBP18.69■□□□□ 0.58
CLN3-207ENST00000395653 CYB5R1Q9UHQ9 305 aa18.69■□□□□ 0.58
CLN3-207ENST00000395653 GDF2Q9UK05 429 aaPredicted RBP18.69■□□□□ 0.58
CLN3-207ENST00000395653 OAZ3Q9UMX2 235 aa18.69■□□□□ 0.58
CLN3-207ENST00000395653 OR6C6A6NF89 314 aa18.68■□□□□ 0.58
CLN3-207ENST00000395653 RER1O15258 196 aa18.68■□□□□ 0.58
CLN3-207ENST00000395653 SURF4O15260 269 aa18.68■□□□□ 0.58
CLN3-207ENST00000395653 SYNGR3O43761 229 aa18.68■□□□□ 0.58
CLN3-207ENST00000395653 NDUFS7O75251 213 aa18.68■□□□□ 0.58
CLN3-207ENST00000395653 GGT2P36268 569 aa18.68■□□□□ 0.58
CLN3-207ENST00000395653 WNT5AP41221 380 aa18.68■□□□□ 0.58
CLN3-207ENST00000395653 PPOXP50336 477 aa18.68■□□□□ 0.58
CLN3-207ENST00000395653 BLVRAP53004 296 aa18.68■□□□□ 0.58
CLN3-207ENST00000395653 SLC18B1Q6NT16 456 aa18.68■□□□□ 0.58
CLN3-207ENST00000395653 OR51L1Q8NGJ5 315 aa18.68■□□□□ 0.58
CLN3-207ENST00000395653 OSBPL10Q9BXB5 764 aa18.68■□□□□ 0.58
CLN3-207ENST00000395653 HDHD2Q9H0R4 259 aa18.68■□□□□ 0.58
CLN3-207ENST00000395653 ENOPH1Q9UHY7 261 aa18.68■□□□□ 0.58
CLN3-207ENST00000395653 GYPBP06028 91 aa18.67■□□□□ 0.58
CLN3-207ENST00000395653 LCKP06239 509 aa18.67■□□□□ 0.58
CLN3-207ENST00000395653 ZNF823P16415 610 aa18.67■□□□□ 0.58
CLN3-207ENST00000395653 PAICSP22234 425 aaKnown RBP18.67■□□□□ 0.58
CLN3-207ENST00000395653 FMO3P31513 532 aa18.67■□□□□ 0.58
CLN3-207ENST00000395653 ARL9Q6T311 187 aa18.67■□□□□ 0.58
CLN3-207ENST00000395653 ZNF101Q8IZC7 436 aa18.67■□□□□ 0.58
CLN3-207ENST00000395653 OR1F12Q8NHA8 337 aa18.67■□□□□ 0.58
CLN3-207ENST00000395653 PKP2Q99959 881 aa18.67■□□□□ 0.58
CLN3-207ENST00000395653 CDADC1Q9BWV3 514 aa18.67■□□□□ 0.58
CLN3-207ENST00000395653 OR51B6Q9H340 312 aa18.67■□□□□ 0.58
CLN3-207ENST00000395653 FAM183AA6NL82 134 aa18.66■□□□□ 0.58
CLN3-207ENST00000395653 MITFO75030 526 aaPredicted RBP18.66■□□□□ 0.58
CLN3-207ENST00000395653 CLUP10909 449 aa18.66■□□□□ 0.58
CLN3-207ENST00000395653 PPP2R2BQ00005 443 aa18.66■□□□□ 0.58
CLN3-207ENST00000395653 PTGES3Q15185 160 aaKnown RBP18.66■□□□□ 0.58
CLN3-207ENST00000395653 TMEM236Q5W0B7 351 aa18.66■□□□□ 0.58
CLN3-207ENST00000395653 CORO6Q6QEF8 472 aa18.66■□□□□ 0.58
CLN3-207ENST00000395653 LINC00346Q8IVM7 164 aa18.66■□□□□ 0.58
CLN3-207ENST00000395653 ICA1LQ8NDH6 482 aa18.66■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms