RNA–Protein interactions for RNA: ENST00000339865.9

USP47-202, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 2 BASIC

Gene USP47, Length 7,775 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-202ENST00000339865 RPS19P39019 145 aaKnown RBP11.83□□□□□ -0.52
USP47-202ENST00000339865 C12orf76Q8N812 135 aaPredicted RBP11.83□□□□□ -0.52
USP47-202ENST00000339865 LRFN3Q9BTN0 628 aa11.83□□□□□ -0.52
USP47-202ENST00000339865 HES4Q9HCC6 221 aa11.83□□□□□ -0.52
USP47-202ENST00000339865 MYO16Q9Y6X6 1858 aa11.82□□□□□ -0.52
USP47-202ENST00000339865 M0R143 59 aa11.82□□□□□ -0.52
USP47-202ENST00000339865 FOXE1O00358 373 aaPredicted RBP11.82□□□□□ -0.52
USP47-202ENST00000339865 SRSF9Q13242 221 aaKnown RBP eCLIP11.82□□□□□ -0.52
USP47-202ENST00000339865 PIGTQ969N2 578 aa11.82□□□□□ -0.52
USP47-202ENST00000339865 SOX21Q9Y651 276 aaPredicted RBP11.82□□□□□ -0.52
USP47-202ENST00000339865 MYADML2A6NDP7 307 aa11.82□□□□□ -0.52
USP47-202ENST00000339865 GPR85P60893 370 aa11.82□□□□□ -0.52
USP47-202ENST00000339865 CSNK1G2P78368 415 aa11.82□□□□□ -0.52
USP47-202ENST00000339865 SPNS3Q6ZMD2 512 aa11.82□□□□□ -0.52
USP47-202ENST00000339865 OR2J1Q9GZK6 312 aa11.82□□□□□ -0.52
USP47-202ENST00000339865 SDR39U1Q9NRG7 319 aaPredicted RBP11.82□□□□□ -0.52
USP47-202ENST00000339865 MUTYHQ9UIF7 546 aa11.82□□□□□ -0.52
USP47-202ENST00000339865 ALPK2Q86TB3 2170 aa11.82□□□□□ -0.52
USP47-202ENST00000339865 RNASEK-C17orf49H0YIS7 233 aa11.82□□□□□ -0.52
USP47-202ENST00000339865 GPRIN2O60269 458 aa11.82□□□□□ -0.52
USP47-202ENST00000339865 BPIFB3P59826 476 aa11.82□□□□□ -0.52
USP47-202ENST00000339865 FAM110CQ1W6H9 321 aa11.82□□□□□ -0.52
USP47-202ENST00000339865 C11orf91Q3C1V1 193 aa11.82□□□□□ -0.52
USP47-202ENST00000339865 TMEM176BQ3YBM2 270 aaPredicted RBP11.82□□□□□ -0.52
USP47-202ENST00000339865 Q6ZPB1 254 aaPredicted RBP11.82□□□□□ -0.52
USP47-202ENST00000339865 PHYHIPLQ96FC7 376 aa11.82□□□□□ -0.52
USP47-202ENST00000339865 SPOCK3Q9BQ16 436 aa11.82□□□□□ -0.52
USP47-202ENST00000339865 NDRG3Q9UGV2 375 aa11.82□□□□□ -0.52
USP47-202ENST00000339865 TNS2Q63HR2 1409 aa11.82□□□□□ -0.52
USP47-202ENST00000339865 CHRM2P08172 466 aa11.82□□□□□ -0.52
USP47-202ENST00000339865 ZNF25P17030 456 aaPredicted RBP11.82□□□□□ -0.52
USP47-202ENST00000339865 ELAVL4P26378 380 aaKnown RBP11.82□□□□□ -0.52
USP47-202ENST00000339865 MAP2K6P52564 334 aa11.82□□□□□ -0.52
USP47-202ENST00000339865 BTLAQ7Z6A9 289 aa11.82□□□□□ -0.52
USP47-202ENST00000339865 ARRDC2Q8TBH0 407 aa11.82□□□□□ -0.52
USP47-202ENST00000339865 GPX7Q96SL4 187 aaPredicted RBP11.82□□□□□ -0.52
USP47-202ENST00000339865 STRAPQ9Y3F4 350 aaKnown RBP11.82□□□□□ -0.52
USP47-202ENST00000339865 INSL5Q9Y5Q6 135 aa11.82□□□□□ -0.52
USP47-202ENST00000339865 ONECUT2O95948 504 aa11.82□□□□□ -0.52
USP47-202ENST00000339865 PSMB6P28072 239 aa11.82□□□□□ -0.52
USP47-202ENST00000339865 ZNF789Q5FWF6 425 aa11.82□□□□□ -0.52
USP47-202ENST00000339865 TCEAL8Q8IYN2 117 aa11.82□□□□□ -0.52
USP47-202ENST00000339865 DEFB123Q8N688 67 aa11.82□□□□□ -0.52
USP47-202ENST00000339865 NEIL2Q969S2 332 aa11.82□□□□□ -0.52
USP47-202ENST00000339865 TMEM230Q96A57 120 aa11.82□□□□□ -0.52
USP47-202ENST00000339865 PTDSS2Q9BVG9 487 aa11.82□□□□□ -0.52
USP47-202ENST00000339865 LPAR5Q9H1C0 372 aa11.82□□□□□ -0.52
USP47-202ENST00000339865 PTPRMP28827 1452 aa11.82□□□□□ -0.52
USP47-202ENST00000339865 FGF18O76093 207 aa11.82□□□□□ -0.52
USP47-202ENST00000339865 BCL6P41182 706 aa11.82□□□□□ -0.52
USP47-202ENST00000339865 FOXA1P55317 472 aa11.82□□□□□ -0.52
USP47-202ENST00000339865 PCBP3P57721 371 aaKnown RBP11.82□□□□□ -0.52
USP47-202ENST00000339865 BCL2L2Q92843 193 aaPredicted RBP11.82□□□□□ -0.52
USP47-202ENST00000339865 CITED2Q99967 270 aaPredicted RBP11.82□□□□□ -0.52
USP47-202ENST00000339865 NTPCRQ9BSD7 190 aaKnown RBP11.82□□□□□ -0.52
USP47-202ENST00000339865 GMPR2Q9P2T1 348 aaKnown RBP11.82□□□□□ -0.52
USP47-202ENST00000339865 FAM87AP0C7U9 286 aa11.81□□□□□ -0.52
USP47-202ENST00000339865 CD46P15529 392 aa11.81□□□□□ -0.52
USP47-202ENST00000339865 SLC5A2P31639 672 aa11.81□□□□□ -0.52
USP47-202ENST00000339865 MFAP5Q13361 173 aa11.81□□□□□ -0.52
USP47-202ENST00000339865 WDR73Q6P4I2 378 aa11.81□□□□□ -0.52
USP47-202ENST00000339865 OR1L4Q8NGR5 311 aa11.81□□□□□ -0.52
USP47-202ENST00000339865 CGGBP1Q9UFW8 167 aaPredicted RBP11.81□□□□□ -0.52
USP47-202ENST00000339865 ZNF256Q9Y2P7 627 aaPredicted RBP11.81□□□□□ -0.52
USP47-202ENST00000339865 C11orf97A0A1B0GVM6 126 aaPredicted RBP11.81□□□□□ -0.52
USP47-202ENST00000339865 GLCEO94923 617 aa11.81□□□□□ -0.52
USP47-202ENST00000339865 GPR12P47775 334 aa11.81□□□□□ -0.52
USP47-202ENST00000339865 FKBP1BP68106 108 aa11.81□□□□□ -0.52
USP47-202ENST00000339865 DMAC2Q9NW81 257 aa11.81□□□□□ -0.52
USP47-202ENST00000339865 M0R1X1 148 aa11.81□□□□□ -0.52
USP47-202ENST00000339865 CD37P11049 281 aa11.81□□□□□ -0.52
USP47-202ENST00000339865 PMP22Q01453 160 aa11.81□□□□□ -0.52
USP47-202ENST00000339865 ABLIM2Q6H8Q1 611 aa11.81□□□□□ -0.52
USP47-202ENST00000339865 PET117Q6UWS5 81 aa11.81□□□□□ -0.52
USP47-202ENST00000339865 CADM3Q8N126 398 aa11.81□□□□□ -0.52
USP47-202ENST00000339865 IL17BQ9UHF5 180 aa11.81□□□□□ -0.52
USP47-202ENST00000339865 F5P12259 2224 aa11.81□□□□□ -0.52
USP47-202ENST00000339865 ZNF541Q9H0D2 1346 aa11.81□□□□□ -0.52
USP47-202ENST00000339865 ATXN7O15265 892 aaPredicted RBP11.81□□□□□ -0.52
USP47-202ENST00000339865 WDR1O75083 606 aa11.81□□□□□ -0.52
USP47-202ENST00000339865 SUCLG1P53597 346 aaKnown RBP11.81□□□□□ -0.52
USP47-202ENST00000339865 LINC00696Q6ZRV3 163 aa11.81□□□□□ -0.52
USP47-202ENST00000339865 SLC16A12Q6ZSM3 486 aa11.81□□□□□ -0.52
USP47-202ENST00000339865 ERGIC1Q969X5 290 aa11.81□□□□□ -0.52
USP47-202ENST00000339865 OR4C12Q96R67 309 aa11.81□□□□□ -0.52
USP47-202ENST00000339865 SLCO3A1Q9UIG8 710 aa11.81□□□□□ -0.52
USP47-202ENST00000339865 UBE2L5PA0A1B0GUS4 154 aa11.81□□□□□ -0.52
USP47-202ENST00000339865 ZNF785A8K8V0 405 aa11.81□□□□□ -0.52
USP47-202ENST00000339865 FAM72CH0Y354 149 aa11.81□□□□□ -0.52
USP47-202ENST00000339865 TCF21O43680 179 aa11.81□□□□□ -0.52
USP47-202ENST00000339865 GOSR1O95249 250 aa11.81□□□□□ -0.52
USP47-202ENST00000339865 HAPLN1P10915 354 aaPredicted RBP11.81□□□□□ -0.52
USP47-202ENST00000339865 RPL12P30050 165 aaKnown RBP11.81□□□□□ -0.52
USP47-202ENST00000339865 SDHAP31040 664 aa11.81□□□□□ -0.52
USP47-202ENST00000339865 ARSDP51689 593 aa11.81□□□□□ -0.52
USP47-202ENST00000339865 ALKBH1Q13686 389 aaKnown RBP11.81□□□□□ -0.52
USP47-202ENST00000339865 SSX1Q16384 188 aa11.81□□□□□ -0.52
USP47-202ENST00000339865 CDKN3Q16667 212 aa11.81□□□□□ -0.52
USP47-202ENST00000339865 FAM72AQ5TYM5 149 aa11.81□□□□□ -0.52
USP47-202ENST00000339865 FAM72DQ6L9T8 149 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms