RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 CRNNQ9UBG3 495 aaPredicted RBP19.3■□□□□ 0.68
SDC3-202ENST00000339394 GDF2Q9UK05 429 aaPredicted RBP19.3■□□□□ 0.68
SDC3-202ENST00000339394 ANKHD1Q8IWZ3 2542 aaKnown RBP19.29■□□□□ 0.68
SDC3-202ENST00000339394 CASKO14936 926 aa19.29■□□□□ 0.68
SDC3-202ENST00000339394 APOL3O95236 402 aa19.29■□□□□ 0.68
SDC3-202ENST00000339394 SBK2P0C263 348 aa19.29■□□□□ 0.68
SDC3-202ENST00000339394 ZNF91Q05481 1191 aa19.29■□□□□ 0.68
SDC3-202ENST00000339394 SCRN3Q0VDG4 424 aa19.29■□□□□ 0.68
SDC3-202ENST00000339394 PABPC1L2AQ5JQF8 200 aa19.29■□□□□ 0.68
SDC3-202ENST00000339394 SLC16A9Q7RTY1 509 aa19.29■□□□□ 0.68
SDC3-202ENST00000339394 ZNF584Q8IVC4 421 aa19.29■□□□□ 0.68
SDC3-202ENST00000339394 OR2AJ1Q8NGZ0 328 aa19.29■□□□□ 0.68
SDC3-202ENST00000339394 AKR7LQ8NHP1 331 aa19.29■□□□□ 0.68
SDC3-202ENST00000339394 FAM222BQ8WU58 562 aa19.29■□□□□ 0.68
SDC3-202ENST00000339394 RNFT2Q96EX2 444 aa19.29■□□□□ 0.68
SDC3-202ENST00000339394 MS4A3Q96HJ5 214 aa19.29■□□□□ 0.68
SDC3-202ENST00000339394 WNT5BQ9H1J7 359 aa19.29■□□□□ 0.68
SDC3-202ENST00000339394 DENRO43583 198 aaKnown RBP19.28■□□□□ 0.68
SDC3-202ENST00000339394 IGLV1-44P01699 117 aa19.28■□□□□ 0.68
SDC3-202ENST00000339394 CELA3BP08861 270 aa19.28■□□□□ 0.68
SDC3-202ENST00000339394 DBTP11182 482 aaKnown RBP19.28■□□□□ 0.68
SDC3-202ENST00000339394 ZNF14P17017 642 aaPredicted RBP19.28■□□□□ 0.68
SDC3-202ENST00000339394 CRYGSP22914 178 aa19.28■□□□□ 0.68
SDC3-202ENST00000339394 ATP6V1E1P36543 226 aa19.28■□□□□ 0.68
SDC3-202ENST00000339394 IDH3GP51553 393 aaPredicted RBP19.28■□□□□ 0.68
SDC3-202ENST00000339394 HCCSP53701 268 aa19.28■□□□□ 0.68
SDC3-202ENST00000339394 HIST1H3AP68431 136 aa19.28■□□□□ 0.68
SDC3-202ENST00000339394 POU4F2Q12837 409 aa19.28■□□□□ 0.68
SDC3-202ENST00000339394 RAB39AQ14964 217 aa19.28■□□□□ 0.68
SDC3-202ENST00000339394 HIST2H3PS2Q5TEC6 136 aa19.28■□□□□ 0.68
SDC3-202ENST00000339394 ZNF774Q6NX45 483 aa19.28■□□□□ 0.68
SDC3-202ENST00000339394 CFAP77Q6ZQR2 320 aa19.28■□□□□ 0.68
SDC3-202ENST00000339394 HIST2H3AQ71DI3 136 aa19.28■□□□□ 0.68
SDC3-202ENST00000339394 SHFQ7M4L6 423 aa19.28■□□□□ 0.68
SDC3-202ENST00000339394 DCXRQ7Z4W1 244 aa19.28■□□□□ 0.68
SDC3-202ENST00000339394 MYPOPQ86VE0 399 aaPredicted RBP19.28■□□□□ 0.68
SDC3-202ENST00000339394 CPEB3Q8NE35 698 aaKnown RBP19.28■□□□□ 0.68
SDC3-202ENST00000339394 OTOSQ8NHW6 89 aa19.28■□□□□ 0.68
SDC3-202ENST00000339394 MAP6Q96JE9 813 aa19.28■□□□□ 0.68
SDC3-202ENST00000339394 Q9H521 79 aa19.28■□□□□ 0.68
SDC3-202ENST00000339394 SLC24A3Q9HC58 644 aa19.28■□□□□ 0.68
SDC3-202ENST00000339394 NGBQ9NPG2 151 aa19.28■□□□□ 0.68
SDC3-202ENST00000339394 PLEK2Q9NYT0 353 aa19.28■□□□□ 0.68
SDC3-202ENST00000339394 RPL36Q9Y3U8 105 aaKnown RBP19.28■□□□□ 0.68
SDC3-202ENST00000339394 IGHV1-18A0A0C4DH31 117 aa19.27■□□□□ 0.68
SDC3-202ENST00000339394 M0R1B8 84 aa19.27■□□□□ 0.68
SDC3-202ENST00000339394 SERPINA5P05154 406 aa19.27■□□□□ 0.68
SDC3-202ENST00000339394 PLP2Q04941 152 aa19.27■□□□□ 0.68
SDC3-202ENST00000339394 CCDC92Q53HC0 331 aaPredicted RBP19.27■□□□□ 0.68
SDC3-202ENST00000339394 TMEM154Q6P9G4 183 aa19.27■□□□□ 0.68
SDC3-202ENST00000339394 ALDH16A1Q8IZ83 802 aa19.27■□□□□ 0.68
SDC3-202ENST00000339394 OR4F15Q8NGB8 312 aa19.27■□□□□ 0.68
SDC3-202ENST00000339394 YIPF3Q9GZM5 350 aa19.27■□□□□ 0.68
SDC3-202ENST00000339394 C1orf198Q9H425 327 aa19.27■□□□□ 0.68
SDC3-202ENST00000339394 SGCEO43556 437 aa19.27■□□□□ 0.67
SDC3-202ENST00000339394 COL8A1P27658 744 aa19.27■□□□□ 0.67
SDC3-202ENST00000339394 VASH1Q7L8A9 365 aaPredicted RBP19.27■□□□□ 0.67
SDC3-202ENST00000339394 CDC20BQ86Y33 519 aa19.27■□□□□ 0.67
SDC3-202ENST00000339394 ST7LQ8TDW4 575 aa19.27■□□□□ 0.67
SDC3-202ENST00000339394 LGALS12Q96DT0 336 aa19.27■□□□□ 0.67
SDC3-202ENST00000339394 PLEKHB1Q9UF11 243 aaPredicted RBP19.27■□□□□ 0.67
SDC3-202ENST00000339394 PCDHGB5Q9Y5G0 923 aa19.27■□□□□ 0.67
SDC3-202ENST00000339394 DOK2O60496 412 aa19.26■□□□□ 0.67
SDC3-202ENST00000339394 CECR9P0C854 216 aa19.26■□□□□ 0.67
SDC3-202ENST00000339394 ALOX5APP20292 161 aa19.26■□□□□ 0.67
SDC3-202ENST00000339394 EIF2B1Q14232 305 aaKnown RBP19.26■□□□□ 0.67
SDC3-202ENST00000339394 C3orf36Q3SXR2 165 aa19.26■□□□□ 0.67
SDC3-202ENST00000339394 C6orf141Q5SZD1 244 aa19.26■□□□□ 0.67
SDC3-202ENST00000339394 ZNF454Q8N9F8 522 aa19.26■□□□□ 0.67
SDC3-202ENST00000339394 ABHD6Q9BV23 337 aa19.26■□□□□ 0.67
SDC3-202ENST00000339394 PNRC2Q9NPJ4 139 aaKnown RBP19.26■□□□□ 0.67
SDC3-202ENST00000339394 MRPS18AQ9NVS2 196 aaKnown RBP19.26■□□□□ 0.67
SDC3-202ENST00000339394 LAMP5Q9UJQ1 280 aa19.26■□□□□ 0.67
SDC3-202ENST00000339394 FBXL3Q9UKT7 428 aa19.26■□□□□ 0.67
SDC3-202ENST00000339394 PRR14LQ5THK1 2151 aa19.25■□□□□ 0.67
SDC3-202ENST00000339394 IQCMA0A1B0GVH7 501 aa19.25■□□□□ 0.67
SDC3-202ENST00000339394 DPRXA6NFQ7 191 aa19.25■□□□□ 0.67
SDC3-202ENST00000339394 SIAH2O43255 324 aa19.25■□□□□ 0.67
SDC3-202ENST00000339394 SYNGR3O43761 229 aa19.25■□□□□ 0.67
SDC3-202ENST00000339394 LYNP07948 512 aa19.25■□□□□ 0.67
SDC3-202ENST00000339394 CD40P25942 277 aa19.25■□□□□ 0.67
SDC3-202ENST00000339394 APEX1P27695 318 aaKnown RBP19.25■□□□□ 0.67
SDC3-202ENST00000339394 ELFN2Q5R3F8 820 aa19.25■□□□□ 0.67
SDC3-202ENST00000339394 KRT80Q6KB66 452 aa19.25■□□□□ 0.67
SDC3-202ENST00000339394 TMEM108Q6UXF1 575 aa19.25■□□□□ 0.67
SDC3-202ENST00000339394 SLC35F2Q8IXU6 374 aa19.25■□□□□ 0.67
SDC3-202ENST00000339394 BPIFB6Q8NFQ5 453 aa19.25■□□□□ 0.67
SDC3-202ENST00000339394 OR10S1Q8NGN2 331 aa19.25■□□□□ 0.67
SDC3-202ENST00000339394 THEM6Q8WUY1 208 aa19.25■□□□□ 0.67
SDC3-202ENST00000339394 AMELYQ99218 206 aa19.25■□□□□ 0.67
SDC3-202ENST00000339394 KCNN3Q9UGI6 736 aa19.25■□□□□ 0.67
SDC3-202ENST00000339394 COPS3Q9UNS2 423 aa19.25■□□□□ 0.67
SDC3-202ENST00000339394 EXOGQ9Y2C4 368 aaKnown RBP19.25■□□□□ 0.67
SDC3-202ENST00000339394 KLHDC2Q9Y2U9 406 aa19.25■□□□□ 0.67
SDC3-202ENST00000339394 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP19.24■□□□□ 0.67
SDC3-202ENST00000339394 DEFB108AA8MXU0 73 aa19.24■□□□□ 0.67
SDC3-202ENST00000339394 J3QRE1 110 aa19.24■□□□□ 0.67
SDC3-202ENST00000339394 XPNPEP2O43895 674 aa19.24■□□□□ 0.67
SDC3-202ENST00000339394 STOMP27105 288 aa19.24■□□□□ 0.67
SDC3-202ENST00000339394 SLC15A1P46059 708 aa19.24■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms